Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000957.1

Orthogroup ID

OG0014853

Physical Location & Seq

Genomic Coordinates Reverse (-)

11716 .. 12802

Gene Structure 1087 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000957.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 525 bp

atggactcctcgtcctccatttctattaaaccgccactaaaactagatctcagtcttccagtctctttgatcattcttcttctcactcactccaaaatggcgagtcgactcgttctcgtgttcacacccggcgctttgctcctcctctcctcccgcccagctctctgcaaggacgtcaccatcgacgacgacgagcatctcagcttcctcgaagagccgaccgagcaggtccatgacgtagcgcctcactatccagatccagacaaattcgacggcgagacctacgacgacaccgacgacttctgcgatttcgatgagggcgatcatgaggagtacaaggagccggaggtcgacgagaaggacgtcgtcgttttgaaggggccgtactttagccaaacggttctgcacatgaataggcctgattcgttgcaggaatatcccaagtcaaccattcgttttcctcaccaaaagatgatcgtcttgggagcactgaattcggaaaagactgctggtgctgaaacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

174

Amino Acids

19.51

Weight (kDa)

4.48

Isoelectric Point (pI)

44.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014853)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0384841
rosa_multiflora	Rmu_sc0000957.1_g000003 Rmu_sc0002699.1_g000005 Rmu_sc0003021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026460 Rroxscaffold_3G00271730 Rroxscaffold_5G00365050
rosa_rugosa	Rorug04G0051900 Rorug05G0286200
rosa_samantha	Rh3DG281200 Rh4DG116600 Rh5BG368300 Rh5BG497000 Rh5CG521000 Rh7AG418800 Rh7CG438400 Rh7CG438500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	177, 366
Acc36I	ACCTGC	1 cut(s)	217
AccI	GTMKAC	2 cut(s)	106, 351
AciI	CCGC	2 cut(s)	32, 154
AclWI	GGATC	1 cut(s)	251
AcsI	RAATTY	2 cut(s)	266, 493
AcyI	GRCGYC	2 cut(s)	174, 363
AfaI	GTAC	2 cut(s)	335, 386
AgsI	TTSAA	1 cut(s)	376
AhdI	GACNNNNNGTC	1 cut(s)	10
AluBI	AGCT	2 cut(s)	161, 204
AluI	AGCT	2 cut(s)	161, 204
Alw21I	GWGCWC	1 cut(s)	490
Alw26I	GTCTC	2 cut(s)	67, 272
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	2 cut(s)	380, 416
ApoI	RAATTY	2 cut(s)	266, 493
AspLEI	GCGC	2 cut(s)	134, 244
AspS9I	GGNCC	2 cut(s)	229, 380
AsuC2I	CCSGG	1 cut(s)	129
AsuHPI	GGTGA	2 cut(s)	169, 455
AvaII	GGWCC	1 cut(s)	229
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
BauI	CACGAG	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	47
Bbv12I	GWGCWC	1 cut(s)	490
BccI	CCATC	1 cut(s)	188
BceAI	ACGGC	2 cut(s)	289, 367
BcgI	CGANNNNNNTGC	2 cut(s)	477, 511
BclI	TGATCA	1 cut(s)	69
BcnI	CCSGG	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	67, 272
BfaI	CTAG	1 cut(s)	44
BfoI	RGCGCY	2 cut(s)	135, 245
BfuAI	ACCTGC	1 cut(s)	217
BglII	AGATCT	1 cut(s)	46
Bme1390I	CCNGG	1 cut(s)	129
Bme18I	GGWCC	1 cut(s)	229
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	229, 380
BmiI	GGNNCC	2 cut(s)	342, 381
BmrFI	CCNGG	1 cut(s)	129
BmsI	GCATC	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	47
BpuMI	CCSGG	1 cut(s)	129
BsaHI	GRCGYC	2 cut(s)	174, 363
BsaI	GGTCTC	1 cut(s)	272
Bse1I	ACTGG	1 cut(s)	59
BseMII	CTCAG	2 cut(s)	64, 214
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	4 cut(s)	131, 134, 139, 344
BseYI	CCCAGC	1 cut(s)	157
BsgI	GTGCAG	1 cut(s)	389
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	2 cut(s)	382, 418
BsiEI	CGRYCG	1 cut(s)	222
BsiHKAI	GWGCWC	1 cut(s)	490
BsiSI	CCGG	2 cut(s)	129, 344
BsmAI	GTCTC	2 cut(s)	67, 272
BsnI	GGCC	2 cut(s)	382, 418
Bso31I	GGTCTC	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	490
Bsp143I	GATC	5 cut(s)	46, 69, 256, 322, 474
BspACI	CCGC	2 cut(s)	32, 154
BspANI	GGCC	2 cut(s)	382, 418
BspCNI	CTCAG	2 cut(s)	63, 213
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	2 cut(s)	342, 381
BspMI	ACCTGC	1 cut(s)	217
BspPI	GGATC	1 cut(s)	251
BspQI	GCTCTTC	1 cut(s)	207
BspTNI	GGTCTC	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	59
BssMI	GATC	5 cut(s)	46, 69, 256, 322, 474
BssNI	GRCGYC	2 cut(s)	174, 363
BssSI	CACGAG	1 cut(s)	116
Bst2BI	CACGAG	1 cut(s)	116
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	207
BstACI	GRCGYC	2 cut(s)	174, 363
BstDEI	CTNAG	3 cut(s)	50, 200, 522
BstH2I	RGCGCY	2 cut(s)	135, 245
BstHHI	GCGC	2 cut(s)	134, 244
BstKTI	GATC	5 cut(s)	49, 72, 259, 325, 477
BstMAI	GTCTC	2 cut(s)	67, 272
BstMBI	GATC	5 cut(s)	46, 69, 256, 322, 474
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	127
BstV2I	GAAGAC	1 cut(s)	47
BstX2I	RGATCY	2 cut(s)	46, 256
BstYI	RGATCY	2 cut(s)	46, 256
BsuRI	GGCC	2 cut(s)	382, 418
BtsIMutI	CAGTG	1 cut(s)	488
BveI	ACCTGC	1 cut(s)	217
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	2 cut(s)	134, 244
Cfr13I	GGNCC	2 cut(s)	229, 380
Csp6I	GTAC	2 cut(s)	334, 385
CviAII	CATG	3 cut(s)	233, 326, 409
CviJI	RGCY	7 cut(s)	161, 204, 217, 343, 382, 393, 418
CviKI_1	RGCY	7 cut(s)	161, 204, 217, 343, 382, 393, 418
CviQI	GTAC	2 cut(s)	334, 385
DdeI	CTNAG	3 cut(s)	50, 200, 522
DpnI	GATC	5 cut(s)	48, 71, 258, 324, 476
DpnII	GATC	5 cut(s)	46, 69, 256, 322, 474
DriI	GACNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	207
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	207
Eco147I	AGGCCT	1 cut(s)	418
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	229
EcoRI	GAATTC	1 cut(s)	493
FaeI	CATG	3 cut(s)	236, 329, 412
FaiI	YATR	3 cut(s)	234, 327, 410
FatI	CATG	3 cut(s)	232, 325, 408
FauI	CCCGC	1 cut(s)	161
FbaI	TGATCA	1 cut(s)	69
FblI	GTMKAC	2 cut(s)	106, 351
FspBI	CTAG	1 cut(s)	44
GlaI	GCGC	2 cut(s)	133, 243
GsaI	CCCAGC	1 cut(s)	161
HaeII	RGCGCY	2 cut(s)	135, 245
HaeIII	GGCC	2 cut(s)	382, 418
HapII	CCGG	2 cut(s)	129, 344
HhaI	GCGC	2 cut(s)	134, 244
Hin1I	GRCGYC	2 cut(s)	174, 363
Hin1II	CATG	3 cut(s)	236, 329, 412
Hin6I	GCGC	2 cut(s)	132, 242
HinP1I	GCGC	2 cut(s)	132, 242
HincII	GTYRAC	3 cut(s)	107, 352, 447
HindII	GTYRAC	3 cut(s)	107, 352, 447
HinfI	GANTC	4 cut(s)	5, 103, 108, 422
HpaII	CCGG	2 cut(s)	129, 344
HphI	GGTGA	2 cut(s)	169, 455
Hpy166II	GTNNAC	4 cut(s)	107, 123, 352, 447
Hpy188I	TCNGA	1 cut(s)	499
Hpy188III	TCNNGA	3 cut(s)	254, 260, 326
Hpy8I	GTNNAC	4 cut(s)	107, 123, 352, 447
Hpy99I	CGWCG	9 cut(s)	188, 191, 194, 275, 290, 299, 356, 368, 371
HpyAV	CCTTC	2 cut(s)	352, 370
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	3 cut(s)	174, 237, 363
HpyCH4V	TGCA	3 cut(s)	168, 406, 430
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	3 cut(s)	50, 200, 522
HpySE526I	ACGT	3 cut(s)	174, 237, 363
Hsp92I	GRCGYC	2 cut(s)	174, 363
Hsp92II	CATG	3 cut(s)	236, 329, 412
HspAI	GCGC	2 cut(s)	132, 242
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	5 cut(s)	46, 69, 256, 322, 474
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	3 cut(s)	144, 340, 485
LweI	GCATC	1 cut(s)	205
MaeI	CTAG	1 cut(s)	44
MaeII	ACGT	3 cut(s)	174, 237, 363
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	5 cut(s)	48, 71, 258, 324, 476
MboI	GATC	5 cut(s)	46, 69, 256, 322, 474
MboII	GAAGA	4 cut(s)	47, 68, 71, 224
MflI	RGATCY	2 cut(s)	46, 256
MhlI	GDGCHC	1 cut(s)	490
MluCI	AATT	2 cut(s)	266, 493
MlyI	GAGTC	2 cut(s)	102, 112
MseI	TTAA	1 cut(s)	27
MspI	CCGG	2 cut(s)	129, 344
MspR9I	CCNGG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	223
NciI	CCSGG	1 cut(s)	129
NdeII	GATC	5 cut(s)	46, 69, 256, 322, 474
NlaIII	CATG	3 cut(s)	236, 329, 412
NlaIV	GGNNCC	2 cut(s)	342, 381
NmuCI	GTSAC	1 cut(s)	175
PagI	TCATGA	1 cut(s)	325
PceI	AGGCCT	1 cut(s)	418
PciSI	GCTCTTC	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	7 cut(s)	180, 189, 291, 294, 303, 318, 360
PfeI	GAWTC	1 cut(s)	422
PflFI	GACNNNGTC	1 cut(s)	365
PleI	GAGTC	2 cut(s)	102, 111
PpsI	GAGTC	2 cut(s)	102, 111
PspFI	CCCAGC	1 cut(s)	157
PspN4I	GGNNCC	2 cut(s)	342, 381
PspPI	GGNCC	2 cut(s)	229, 380
PsuI	RGATCY	2 cut(s)	46, 256
PsyI	GACNNNGTC	1 cut(s)	365
RsaI	GTAC	2 cut(s)	335, 386
RsaNI	GTAC	2 cut(s)	334, 385
SalI	GTCGAC	2 cut(s)	105, 350
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	27
Sau3AI	GATC	5 cut(s)	46, 69, 256, 322, 474
Sau96I	GGNCC	2 cut(s)	229, 380
SchI	GAGTC	2 cut(s)	102, 112
ScrFI	CCNGG	1 cut(s)	129
SduI	GDGCHC	1 cut(s)	490
SetI	ASST	8 cut(s)	163, 177, 206, 231, 240, 284, 351, 366
SfaNI	GCATC	1 cut(s)	205
SinI	GGWCC	1 cut(s)	229
Sse9I	AATT	2 cut(s)	266, 493
SseBI	AGGCCT	1 cut(s)	418
SsiI	CCGC	2 cut(s)	32, 154
SspMI	CTAG	1 cut(s)	44
StuI	AGGCCT	1 cut(s)	418
StyD4I	CCNGG	1 cut(s)	127
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	3 cut(s)	177, 240, 366
TaqI	TCGA	6 cut(s)	106, 183, 210, 270, 312, 351
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	2 cut(s)	266, 493
TatI	WGTACW	1 cut(s)	333
TfiI	GAWTC	1 cut(s)	422
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	1 cut(s)	495
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspDTI	ATGAA	1 cut(s)	425
TspRI	CASTG	1 cut(s)	495
Tth111I	GACNNNGTC	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	2 cut(s)	266, 493
XmiI	GTMKAC	2 cut(s)	106, 351
XspI	CTAG	1 cut(s)	44
ZraI	GACGTC	2 cut(s)	175, 364

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.