Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014853

Physical Location & Seq

Genomic Coordinates Forward (+)

46349286 .. 46349573

Gene Structure 288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00365050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 288 bp

ATGGCGAGTCGACTCATTCTCGTGTTCACACTCGGCGCCCGCTCCTCCTCCTCCTCCCGCGGCTCTCTCCAAGGACGCCGCCGTCGACGACGACGAGGAGGATCTCGGCTTCCTCGAAGAGTCAATCGAGCAGCAGGGACACGGCCACGATGCGCGCCGCACTATCCGCATCCGGACAAATTCGACGCCGATAACTACAACGACGCCGACGACTTCTCCGATTTCGACGAGGGCGATTGGGAGTCGTACAAGGAGCCGAGGTCGACGAGAAGGACGTCGTCGTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

95

Amino Acids

10.95

Weight (kDa)

11.15

Isoelectric Point (pI)

98.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014853)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0384841
rosa_multiflora	Rmu_sc0000957.1_g000003 Rmu_sc0002699.1_g000005 Rmu_sc0003021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026460 Rroxscaffold_3G00271730 Rroxscaffold_5G00365050
rosa_rugosa	Rorug04G0051900 Rorug05G0286200
rosa_samantha	Rh3DG281200 Rh4DG116600 Rh5BG368300 Rh5BG497000 Rh5CG521000 Rh7AG418800 Rh7CG438400 Rh7CG438500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	81
AatII	GACGTC	1 cut(s)	278
AccB1I	GGYRCC	1 cut(s)	35
AccBSI	CCGCTC	1 cut(s)	42
AccI	GTMKAC	3 cut(s)	10, 85, 263
AccII	CGCG	2 cut(s)	60, 155
AccIII	TCCGGA	1 cut(s)	172
AciI	CCGC	6 cut(s)	40, 58, 60, 79, 158, 167
AclWI	GGATC	1 cut(s)	109
AcoI	YGGCCR	1 cut(s)	143
AcsI	RAATTY	1 cut(s)	179
AcyI	GRCGYC	5 cut(s)	36, 76, 186, 204, 275
AfaI	GTAC	1 cut(s)	248
AlwI	GGATC	1 cut(s)	109
Aor13HI	TCCGGA	1 cut(s)	172
AoxI	GGCC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	179
AspLEI	GCGC	3 cut(s)	38, 155, 157
BanI	GGYRCC	1 cut(s)	35
BauI	CACGAG	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	143
BceAI	ACGGC	2 cut(s)	66, 158
BfoI	RGCGCY	1 cut(s)	39
BisI	GCNGC	4 cut(s)	61, 79, 132, 158
BlsI	GCNGC	4 cut(s)	62, 80, 133, 159
BmiI	GGNNCC	2 cut(s)	37, 255
BmsI	GCATC	2 cut(s)	140, 178
BsaHI	GRCGYC	5 cut(s)	36, 76, 186, 204, 275
BsaJI	CCNNGG	3 cut(s)	58, 70, 257
BsaWI	WCCGGW	1 cut(s)	172
BsaXI	ACNNNNNCTCC	4 cut(s)	200, 230, 245, 275
BseAI	TCCGGA	1 cut(s)	172
BseDI	CCNNGG	3 cut(s)	58, 70, 257
BseGI	GGATG	1 cut(s)	169
BsePI	GCGCGC	1 cut(s)	153
BseRI	GAGGAG	5 cut(s)	34, 37, 40, 43, 111
BseXI	GCAGC	1 cut(s)	143
Bsh1236I	CGCG	2 cut(s)	60, 155
BshFI	GGCC	1 cut(s)	145
BshNI	GGYRCC	1 cut(s)	35
BsiSI	CCGG	1 cut(s)	173
BslFI	GGGAC	1 cut(s)	151
BsmFI	GGGAC	1 cut(s)	151
BsnI	GGCC	1 cut(s)	145
Bsp13I	TCCGGA	1 cut(s)	172
Bsp143I	GATC	1 cut(s)	101
BspACI	CCGC	6 cut(s)	40, 58, 60, 79, 158, 167
BspANI	GGCC	1 cut(s)	145
BspEI	TCCGGA	1 cut(s)	172
BspFNI	CGCG	2 cut(s)	60, 155
BspLI	GGNNCC	2 cut(s)	37, 255
BspPI	GGATC	1 cut(s)	109
BspT107I	GGYRCC	1 cut(s)	35
BsrBI	CCGCTC	1 cut(s)	42
BssECI	CCNNGG	3 cut(s)	58, 70, 257
BssHII	GCGCGC	1 cut(s)	153
BssMI	GATC	1 cut(s)	101
BssNI	GRCGYC	5 cut(s)	36, 76, 186, 204, 275
BssSI	CACGAG	1 cut(s)	20
BssT1I	CCWWGG	1 cut(s)	70
Bst2BI	CACGAG	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	112
BstACI	GRCGYC	5 cut(s)	36, 76, 186, 204, 275
BstC8I	GCNNGC	2 cut(s)	40, 155
BstDSI	CCRYGG	1 cut(s)	58
BstF5I	GGATG	1 cut(s)	169
BstFNI	CGCG	2 cut(s)	60, 155
BstH2I	RGCGCY	1 cut(s)	39
BstHHI	GCGC	3 cut(s)	38, 155, 157
BstKTI	GATC	1 cut(s)	104
BstMBI	GATC	1 cut(s)	101
BstMWI	GCNNNNNNNGC	1 cut(s)	166
BstUI	CGCG	2 cut(s)	60, 155
BstV1I	GCAGC	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	101
BstYI	RGATCY	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	145
BtgI	CCRYGG	1 cut(s)	58
BtsCI	GGATG	1 cut(s)	169
Cac8I	GCNNGC	2 cut(s)	40, 155
CfoI	GCGC	3 cut(s)	38, 155, 157
Cfr42I	CCGCGG	1 cut(s)	61
CseI	GACGC	3 cut(s)	84, 194, 212
Csp6I	GTAC	1 cut(s)	247
CviJI	RGCY	4 cut(s)	63, 109, 145, 256
CviKI_1	RGCY	4 cut(s)	63, 109, 145, 256
CviQI	GTAC	1 cut(s)	247
DinI	GGCGCC	1 cut(s)	37
DpnI	GATC	1 cut(s)	103
DpnII	GATC	1 cut(s)	101
DrdI	GACNNNNNNGTC	1 cut(s)	81
DseDI	GACNNNNNNGTC	1 cut(s)	81
EaeI	YGGCCR	1 cut(s)	143
Eam1104I	CTCTTC	1 cut(s)	112
EarI	CTCTTC	1 cut(s)	112
Eco130I	CCWWGG	1 cut(s)	70
EcoT14I	CCWWGG	1 cut(s)	70
EgeI	GGCGCC	1 cut(s)	37
EheI	GGCGCC	1 cut(s)	37
ErhI	CCWWGG	1 cut(s)	70
FaqI	GGGAC	1 cut(s)	151
FauI	CCCGC	2 cut(s)	47, 65
FblI	GTMKAC	3 cut(s)	10, 85, 263
Fnu4HI	GCNGC	4 cut(s)	61, 79, 132, 158
FokI	GGATG	1 cut(s)	156
Fsp4HI	GCNGC	4 cut(s)	61, 79, 132, 158
GlaI	GCGC	3 cut(s)	37, 154, 156
GluI	GCNGC	4 cut(s)	61, 79, 132, 158
HaeII	RGCGCY	1 cut(s)	39
HaeIII	GGCC	1 cut(s)	145
HapII	CCGG	1 cut(s)	173
HgaI	GACGC	3 cut(s)	84, 194, 212
HhaI	GCGC	3 cut(s)	38, 155, 157
Hin1I	GRCGYC	5 cut(s)	36, 76, 186, 204, 275
Hin6I	GCGC	3 cut(s)	36, 153, 155
HinP1I	GCGC	3 cut(s)	36, 153, 155
HincII	GTYRAC	3 cut(s)	11, 86, 264
HindII	GTYRAC	3 cut(s)	11, 86, 264
HinfI	GANTC	4 cut(s)	7, 12, 120, 242
HpaII	CCGG	1 cut(s)	173
Hpy166II	GTNNAC	4 cut(s)	11, 27, 86, 264
Hpy188I	TCNGA	1 cut(s)	220
Hpy188III	TCNNGA	1 cut(s)	173
Hpy8I	GTNNAC	4 cut(s)	11, 27, 86, 264
HpyAV	CCTTC	1 cut(s)	264
HpyCH4IV	ACGT	1 cut(s)	275
HpyF10VI	GCNNNNNNNGC	1 cut(s)	166
HpySE526I	ACGT	1 cut(s)	275
Hsp92I	GRCGYC	5 cut(s)	36, 76, 186, 204, 275
HspAI	GCGC	3 cut(s)	36, 153, 155
KasI	GGCGCC	1 cut(s)	35
Kpn2I	TCCGGA	1 cut(s)	172
KspI	CCGCGG	1 cut(s)	61
Kzo9I	GATC	1 cut(s)	101
LmnI	GCTCC	2 cut(s)	47, 253
LpnPI	CCDG	2 cut(s)	120, 186
Lsp1109I	GCAGC	1 cut(s)	143
LweI	GCATC	2 cut(s)	140, 178
MaeII	ACGT	1 cut(s)	275
MalI	GATC	1 cut(s)	103
MbiI	CCGCTC	1 cut(s)	42
MboI	GATC	1 cut(s)	101
MboII	GAAGA	1 cut(s)	129
MflI	RGATCY	1 cut(s)	101
MluCI	AATT	1 cut(s)	179
Mly113I	GGCGCC	1 cut(s)	36
MlyI	GAGTC	4 cut(s)	6, 16, 129, 251
MnlI	CCTC	9 cut(s)	55, 58, 61, 64, 89, 92, 123, 223, 252
MroI	TCCGGA	1 cut(s)	172
MslI	CAYNNNNRTG	1 cut(s)	20
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	1 cut(s)	173
MvnI	CGCG	2 cut(s)	60, 155
MwoI	GCNNNNNNNGC	1 cut(s)	166
NarI	GGCGCC	1 cut(s)	36
NdeII	GATC	1 cut(s)	101
NlaIV	GGNNCC	2 cut(s)	37, 255
NmeAIII	GCCGAG	3 cut(s)	12, 85, 282
PauI	GCGCGC	1 cut(s)	153
PcsI	WCGNNNNNNNCGW	7 cut(s)	82, 91, 112, 207, 216, 231, 272
PflFI	GACNNNGTC	1 cut(s)	277
PkrI	GCNGC	4 cut(s)	62, 80, 133, 159
PleI	GAGTC	4 cut(s)	6, 15, 128, 250
PluTI	GGCGCC	1 cut(s)	39
PpsI	GAGTC	4 cut(s)	6, 15, 128, 250
PspN4I	GGNNCC	2 cut(s)	37, 255
PsuI	RGATCY	1 cut(s)	101
PsyI	GACNNNGTC	1 cut(s)	277
PteI	GCGCGC	1 cut(s)	153
RsaI	GTAC	1 cut(s)	248
RsaNI	GTAC	1 cut(s)	247
RseI	CAYNNNNRTG	1 cut(s)	20
SacII	CCGCGG	1 cut(s)	61
SalI	GTCGAC	3 cut(s)	9, 84, 262
SatI	GCNGC	4 cut(s)	61, 79, 132, 158
Sau3AI	GATC	1 cut(s)	101
SchI	GAGTC	4 cut(s)	6, 16, 129, 251
SetI	ASST	2 cut(s)	263, 278
SfaNI	GCATC	2 cut(s)	140, 178
SfoI	GGCGCC	1 cut(s)	37
Sfr303I	CCGCGG	1 cut(s)	61
SgrBI	CCGCGG	1 cut(s)	61
SgrDI	CGTCGACG	1 cut(s)	84
SmiMI	CAYNNNNRTG	1 cut(s)	20
Sse9I	AATT	1 cut(s)	179
SsiI	CCGC	6 cut(s)	40, 58, 60, 79, 158, 167
SspDI	GGCGCC	1 cut(s)	35
StyI	CCWWGG	1 cut(s)	70
TaiI	ACGT	1 cut(s)	278
TaqI	TCGA	7 cut(s)	10, 85, 115, 127, 183, 225, 263
TasI	AATT	1 cut(s)	179
TauI	GCSGC	3 cut(s)	63, 81, 160
TseI	GCWGC	1 cut(s)	131
Tth111I	GACNNNGTC	1 cut(s)	277
XapI	RAATTY	1 cut(s)	179
XmiI	GTMKAC	3 cut(s)	10, 85, 263
ZraI	GACGTC	1 cut(s)	276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.