Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0014853

Physical Location & Seq

Genomic Coordinates Forward (+)

57349166 .. 57352181

Gene Structure 3016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG438400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

ATGGACTCCTCGTCCTCCATTTCTATTAAACCGCCACTAAAACCAGATCTCAGTCTTCCAGTCTCTTTGATCATTCTTCTTCTCACTCACCTCAAAATGGCGAGTCGACTCGTTCTCGTGTTCACACTCGGCGCTTTGCTCCTCCTCTCCTCCCGCCCAGCTCTCTGCAAGGACGTCACCGTTGACGACGACGAGCATCTCAGCTTCCTCGAAGAGCCGACCGAGCAGGTCCATGACGCGGCGCCTCACTATCCAGATCCAGAAAAATTCGACGGCGAGACCTACGACGACACCGACGACTTCTCCGATTTCGATGAGGGCGATCATGAGGCGTACAAGGAGCCGGAGGTCGACGAGAAGGAAGTCGTCGTTTTGAAGGGGCCGTACTTTAGCCAAACGGTTGTGGGAATGACCACATGCAGTGGGTATAATTGCAGGTTGTGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

149

Amino Acids

16.66

Weight (kDa)

4.32

Isoelectric Point (pI)

37.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014853)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0384841
rosa_multiflora	Rmu_sc0000957.1_g000003 Rmu_sc0002699.1_g000005 Rmu_sc0003021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026460 Rroxscaffold_3G00271730 Rroxscaffold_5G00365050
rosa_rugosa	Rorug04G0051900 Rorug05G0286200
rosa_samantha	Rh3DG281200 Rh4DG116600 Rh5BG368300 Rh5BG497000 Rh5CG521000 Rh7AG418800 Rh7CG438400 Rh7CG438500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	177
Acc36I	ACCTGC	2 cut(s)	217, 426
AccB1I	GGYRCC	1 cut(s)	241
AccI	GTMKAC	2 cut(s)	106, 351
AccII	CGCG	1 cut(s)	239
AciI	CCGC	3 cut(s)	32, 154, 239
AclWI	GGATC	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	266
AcyI	GRCGYC	2 cut(s)	174, 242
AfaI	GTAC	2 cut(s)	335, 386
AfiI	CCNNNNNNNGG	2 cut(s)	97, 238
AgsI	TTSAA	1 cut(s)	376
AhdI	GACNNNNNGTC	1 cut(s)	10
AluBI	AGCT	2 cut(s)	161, 204
AluI	AGCT	2 cut(s)	161, 204
Alw26I	GTCTC	2 cut(s)	67, 272
AlwI	GGATC	1 cut(s)	251
AoxI	GGCC	1 cut(s)	380
ApoI	RAATTY	1 cut(s)	266
AspLEI	GCGC	2 cut(s)	134, 244
AspS9I	GGNCC	2 cut(s)	229, 380
AsuHPI	GGTGA	2 cut(s)	80, 169
AvaII	GGWCC	1 cut(s)	229
BanI	GGYRCC	1 cut(s)	241
BarI	GAAGNNNNNNTAC	2 cut(s)	368, 400
BauI	CACGAG	1 cut(s)	116
BbsI	GAAGAC	1 cut(s)	47
BceAI	ACGGC	2 cut(s)	289, 367
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	2 cut(s)	67, 272
BfoI	RGCGCY	2 cut(s)	135, 245
BfuAI	ACCTGC	2 cut(s)	217, 426
BglII	AGATCT	1 cut(s)	46
BisI	GCNGC	1 cut(s)	240
BlsI	GCNGC	1 cut(s)	241
Bme18I	GGWCC	1 cut(s)	229
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmgT120I	GGNCC	2 cut(s)	229, 380
BmiI	GGNNCC	3 cut(s)	243, 342, 381
BmsI	GCATC	1 cut(s)	205
BpiI	GAAGAC	1 cut(s)	47
BsaHI	GRCGYC	2 cut(s)	174, 242
BsaI	GGTCTC	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	287, 317
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 238
Bse1I	ACTGG	1 cut(s)	59
BseLI	CCNNNNNNNGG	2 cut(s)	97, 238
BseMII	CTCAG	2 cut(s)	64, 214
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	3 cut(s)	131, 134, 139
BseYI	CCCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	239
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	382
BshNI	GGYRCC	1 cut(s)	241
BsiEI	CGRYCG	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	344
BslI	CCNNNNNNNGG	2 cut(s)	97, 238
BsmAI	GTCTC	2 cut(s)	67, 272
BsnI	GGCC	1 cut(s)	382
Bso31I	GGTCTC	1 cut(s)	272
Bsp143I	GATC	4 cut(s)	46, 69, 256, 322
BspACI	CCGC	3 cut(s)	32, 154, 239
BspANI	GGCC	1 cut(s)	382
BspCNI	CTCAG	2 cut(s)	63, 213
BspFNI	CGCG	1 cut(s)	239
BspHI	TCATGA	1 cut(s)	325
BspLI	GGNNCC	3 cut(s)	243, 342, 381
BspMI	ACCTGC	2 cut(s)	217, 426
BspPI	GGATC	1 cut(s)	251
BspQI	GCTCTTC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	272
BsrI	ACTGG	1 cut(s)	59
BssMI	GATC	4 cut(s)	46, 69, 256, 322
BssNI	GRCGYC	2 cut(s)	174, 242
BssSI	CACGAG	1 cut(s)	116
Bst2BI	CACGAG	1 cut(s)	116
Bst4CI	ACNGT	2 cut(s)	181, 400
Bst6I	CTCTTC	1 cut(s)	207
BstACI	GRCGYC	2 cut(s)	174, 242
BstDEI	CTNAG	2 cut(s)	50, 200
BstFNI	CGCG	1 cut(s)	239
BstH2I	RGCGCY	2 cut(s)	135, 245
BstHHI	GCGC	2 cut(s)	134, 244
BstKTI	GATC	4 cut(s)	49, 72, 259, 325
BstMAI	GTCTC	2 cut(s)	67, 272
BstMBI	GATC	4 cut(s)	46, 69, 256, 322
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNSI	RCATGY	1 cut(s)	420
BstUI	CGCG	1 cut(s)	239
BstV2I	GAAGAC	1 cut(s)	47
BstX2I	RGATCY	2 cut(s)	46, 256
BstYI	RGATCY	2 cut(s)	46, 256
BsuRI	GGCC	1 cut(s)	382
BtsI	GCAGTG	1 cut(s)	427
BtsIMutI	CAGTG	1 cut(s)	427
BveI	ACCTGC	2 cut(s)	217, 426
CciI	TCATGA	1 cut(s)	325
CfoI	GCGC	2 cut(s)	134, 244
Cfr13I	GGNCC	2 cut(s)	229, 380
CseI	GACGC	1 cut(s)	245
Csp6I	GTAC	2 cut(s)	334, 385
CviAII	CATG	3 cut(s)	233, 326, 417
CviJI	RGCY	6 cut(s)	161, 204, 217, 343, 382, 393
CviKI_1	RGCY	6 cut(s)	161, 204, 217, 343, 382, 393
CviQI	GTAC	2 cut(s)	334, 385
DdeI	CTNAG	2 cut(s)	50, 200
DinI	GGCGCC	1 cut(s)	243
DpnI	GATC	4 cut(s)	48, 71, 258, 324
DpnII	GATC	4 cut(s)	46, 69, 256, 322
DriI	GACNNNNNGTC	1 cut(s)	10
Eam1104I	CTCTTC	1 cut(s)	207
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EarI	CTCTTC	1 cut(s)	207
Eco31I	GGTCTC	1 cut(s)	272
Eco47I	GGWCC	1 cut(s)	229
EgeI	GGCGCC	1 cut(s)	243
EheI	GGCGCC	1 cut(s)	243
FaeI	CATG	3 cut(s)	236, 329, 420
FaiI	YATR	4 cut(s)	234, 327, 418, 429
FatI	CATG	3 cut(s)	232, 325, 416
FauI	CCCGC	1 cut(s)	161
FbaI	TGATCA	1 cut(s)	69
FblI	GTMKAC	2 cut(s)	106, 351
Fnu4HI	GCNGC	1 cut(s)	240
Fsp4HI	GCNGC	1 cut(s)	240
GlaI	GCGC	2 cut(s)	133, 243
GluI	GCNGC	1 cut(s)	240
GsaI	CCCAGC	1 cut(s)	161
HaeII	RGCGCY	2 cut(s)	135, 245
HaeIII	GGCC	1 cut(s)	382
HapII	CCGG	1 cut(s)	344
HgaI	GACGC	1 cut(s)	245
HhaI	GCGC	2 cut(s)	134, 244
Hin1I	GRCGYC	2 cut(s)	174, 242
Hin1II	CATG	3 cut(s)	236, 329, 420
Hin6I	GCGC	2 cut(s)	132, 242
HinP1I	GCGC	2 cut(s)	132, 242
HincII	GTYRAC	3 cut(s)	107, 184, 352
HindII	GTYRAC	3 cut(s)	107, 184, 352
HinfI	GANTC	3 cut(s)	5, 103, 108
HpaII	CCGG	1 cut(s)	344
HphI	GGTGA	2 cut(s)	80, 169
Hpy166II	GTNNAC	4 cut(s)	107, 123, 184, 352
Hpy188I	TCNGA	1 cut(s)	307
Hpy188III	TCNNGA	3 cut(s)	254, 260, 326
Hpy8I	GTNNAC	4 cut(s)	107, 123, 184, 352
Hpy99I	CGWCG	7 cut(s)	191, 194, 275, 290, 299, 356, 371
HpyAV	CCTTC	2 cut(s)	352, 370
HpyCH4III	ACNGT	2 cut(s)	181, 400
HpyCH4IV	ACGT	1 cut(s)	174
HpyCH4V	TGCA	3 cut(s)	168, 420, 435
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	2 cut(s)	50, 200
HpySE526I	ACGT	1 cut(s)	174
Hsp92I	GRCGYC	2 cut(s)	174, 242
Hsp92II	CATG	3 cut(s)	236, 329, 420
HspAI	GCGC	2 cut(s)	132, 242
KasI	GGCGCC	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	4 cut(s)	46, 69, 256, 322
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	2 cut(s)	144, 340
LpnPI	CCDG	8 cut(s)	57, 72, 171, 212, 267, 273, 357, 421
LweI	GCATC	1 cut(s)	205
MaeII	ACGT	1 cut(s)	174
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	4 cut(s)	48, 71, 258, 324
MboI	GATC	4 cut(s)	46, 69, 256, 322
MboII	GAAGA	4 cut(s)	47, 68, 71, 224
MflI	RGATCY	2 cut(s)	46, 256
MluCI	AATT	2 cut(s)	266, 430
Mly113I	GGCGCC	1 cut(s)	242
MlyI	GAGTC	2 cut(s)	102, 112
MseI	TTAA	1 cut(s)	27
MspI	CCGG	1 cut(s)	344
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	223
NarI	GGCGCC	1 cut(s)	242
NdeII	GATC	4 cut(s)	46, 69, 256, 322
NlaIII	CATG	3 cut(s)	236, 329, 420
NlaIV	GGNNCC	3 cut(s)	243, 342, 381
NmeAIII	GCCGAG	1 cut(s)	108
NmuCI	GTSAC	1 cut(s)	175
NspI	RCATGY	1 cut(s)	420
PagI	TCATGA	1 cut(s)	325
PciSI	GCTCTTC	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	4 cut(s)	291, 294, 303, 318
PkrI	GCNGC	1 cut(s)	241
PleI	GAGTC	2 cut(s)	102, 111
PluTI	GGCGCC	1 cut(s)	245
PpsI	GAGTC	2 cut(s)	102, 111
PspFI	CCCAGC	1 cut(s)	157
PspN4I	GGNNCC	3 cut(s)	243, 342, 381
PspPI	GGNCC	2 cut(s)	229, 380
PsuI	RGATCY	2 cut(s)	46, 256
RsaI	GTAC	2 cut(s)	335, 386
RsaNI	GTAC	2 cut(s)	334, 385
SalI	GTCGAC	2 cut(s)	105, 350
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	1 cut(s)	240
Sau3AI	GATC	4 cut(s)	46, 69, 256, 322
Sau96I	GGNCC	2 cut(s)	229, 380
SchI	GAGTC	2 cut(s)	102, 112
SetI	ASST	8 cut(s)	93, 163, 177, 206, 231, 284, 351, 440
SfaNI	GCATC	1 cut(s)	205
SfoI	GGCGCC	1 cut(s)	243
SinI	GGWCC	1 cut(s)	229
Sse9I	AATT	2 cut(s)	266, 430
SsiI	CCGC	3 cut(s)	32, 154, 239
SspDI	GGCGCC	1 cut(s)	241
TaaI	ACNGT	2 cut(s)	181, 400
TaiI	ACGT	1 cut(s)	177
TaqI	TCGA	5 cut(s)	106, 210, 270, 312, 351
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	2 cut(s)	266, 430
TauI	GCSGC	1 cut(s)	242
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	1 cut(s)	427
TseFI	GTSAC	1 cut(s)	175
Tsp45I	GTSAC	1 cut(s)	175
TspRI	CASTG	1 cut(s)	427
VpaK11BI	GGWCC	1 cut(s)	229
XapI	RAATTY	1 cut(s)	266
XceI	RCATGY	1 cut(s)	420
XmiI	GTMKAC	2 cut(s)	106, 351
ZraI	GACGTC	1 cut(s)	175

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.