Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0014853

Physical Location & Seq

Genomic Coordinates Reverse (-)

64061603 .. 64062930

Gene Structure 1328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00271730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGCGAGTCGACTCGTTCTCGTGTTCACACTCGGCACCCTGCTGCTCCTCTCCTCCCGCCCGGCTCTCTTCAAGGACGCCGCCGTCGATGACGAGGATCTCGGCTTCCTCGAAGAGCCGACCGTGCAGCGGGGCCACGGCCACGACACCGCGCCGCACTATCCGCATCCGGACGAATTCGACGGCGAGAGCTACGACGATGCCGACGACTTCTCCGATTTCGACGAGGGCGATCGGGAGGCGTACAAGGAGCTCGAGGTTGACGAGAAGGACCAGGCAAAGGTCCCGGTGCCAATGCGCTCAATTGCGGTACACCAAAAAATTTTGCATCTAGATGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

113

Amino Acids

12.71

Weight (kDa)

4.37

Isoelectric Point (pI)

34.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014853)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0384841
rosa_multiflora	Rmu_sc0000957.1_g000003 Rmu_sc0002699.1_g000005 Rmu_sc0003021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026460 Rroxscaffold_3G00271730 Rroxscaffold_5G00365050
rosa_rugosa	Rorug04G0051900 Rorug05G0286200
rosa_samantha	Rh3DG281200 Rh4DG116600 Rh5BG368300 Rh5BG497000 Rh5CG521000 Rh7AG418800 Rh7CG438400 Rh7CG438500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AccB1I	GGYRCC	2 cut(s)	35, 289
AccI	GTMKAC	1 cut(s)	10
AccII	CGCG	1 cut(s)	152
AccIII	TCCGGA	1 cut(s)	169
AciI	CCGC	7 cut(s)	58, 81, 130, 150, 155, 164, 308
AclWI	GGATC	1 cut(s)	105
AcoI	YGGCCR	1 cut(s)	139
AcsI	RAATTY	2 cut(s)	176, 321
AcyI	GRCGYC	1 cut(s)	78
AfaI	GTAC	2 cut(s)	245, 312
AfiI	CCNNNNNNNGG	2 cut(s)	129, 280
AgsI	TTSAA	1 cut(s)	73
AjnI	CCWGG	1 cut(s)	273
AluBI	AGCT	2 cut(s)	192, 253
AluI	AGCT	2 cut(s)	192, 253
Alw21I	GWGCWC	1 cut(s)	255
AlwI	GGATC	1 cut(s)	105
Ama87I	CYCGRG	1 cut(s)	254
Aor13HI	TCCGGA	1 cut(s)	169
AoxI	GGCC	2 cut(s)	133, 139
ApeKI	GCWGC	2 cut(s)	43, 127
ApoI	RAATTY	2 cut(s)	176, 321
AspLEI	GCGC	2 cut(s)	154, 300
AspS9I	GGNCC	3 cut(s)	133, 271, 283
AsuC2I	CCSGG	2 cut(s)	62, 287
AvaI	CYCGRG	1 cut(s)	254
AvaII	GGWCC	2 cut(s)	271, 283
BanI	GGYRCC	2 cut(s)	35, 289
BanII	GRGCYC	1 cut(s)	255
BauI	CACGAG	1 cut(s)	20
Bbv12I	GWGCWC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	30, 139
BceAI	ACGGC	3 cut(s)	68, 154, 199
BciT130I	CCWGG	1 cut(s)	275
BcnI	CCSGG	2 cut(s)	62, 287
BfaI	CTAG	1 cut(s)	332
BisI	GCNGC	4 cut(s)	44, 81, 128, 155
BlsI	GCNGC	4 cut(s)	45, 82, 129, 156
Bme1390I	CCNGG	3 cut(s)	62, 275, 287
Bme18I	GGWCC	2 cut(s)	271, 283
BmeT110I	CYCGRG	1 cut(s)	254
BmgT120I	GGNCC	3 cut(s)	133, 271, 283
BmiI	GGNNCC	4 cut(s)	37, 134, 285, 291
BmrFI	CCNGG	3 cut(s)	62, 275, 287
BmsI	GCATC	3 cut(s)	175, 190, 337
BpuMI	CCSGG	2 cut(s)	62, 287
BsaHI	GRCGYC	1 cut(s)	78
BsaJI	CCNNGG	1 cut(s)	136
BsaWI	WCCGGW	1 cut(s)	169
BsaXI	ACNNNNNCTCC	2 cut(s)	197, 227
Bsc4I	CCNNNNNNNGG	2 cut(s)	129, 280
BseAI	TCCGGA	1 cut(s)	169
BseBI	CCWGG	1 cut(s)	275
BseDI	CCNNGG	1 cut(s)	136
BseGI	GGATG	1 cut(s)	166
BseLI	CCNNNNNNNGG	2 cut(s)	129, 280
BseRI	GAGGAG	2 cut(s)	38, 43
BseXI	GCAGC	2 cut(s)	30, 139
BsgI	GTGCAG	1 cut(s)	146
Bsh1236I	CGCG	1 cut(s)	152
Bsh1285I	CGRYCG	2 cut(s)	123, 235
BshFI	GGCC	2 cut(s)	135, 141
BshNI	GGYRCC	2 cut(s)	35, 289
BsiEI	CGRYCG	2 cut(s)	123, 235
BsiHKAI	GWGCWC	1 cut(s)	255
BsiHKCI	CYCGRG	1 cut(s)	254
BsiSI	CCGG	3 cut(s)	62, 170, 287
BslFI	GGGAC	1 cut(s)	269
BslI	CCNNNNNNNGG	2 cut(s)	129, 280
BsmFI	GGGAC	1 cut(s)	269
BsnI	GGCC	2 cut(s)	135, 141
BsoBI	CYCGRG	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	255
Bsp13I	TCCGGA	1 cut(s)	169
Bsp143I	GATC	2 cut(s)	97, 232
BspACI	CCGC	7 cut(s)	58, 81, 130, 150, 155, 164, 308
BspANI	GGCC	2 cut(s)	135, 141
BspEI	TCCGGA	1 cut(s)	169
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	4 cut(s)	37, 134, 285, 291
BspPI	GGATC	1 cut(s)	105
BspQI	GCTCTTC	1 cut(s)	108
BspT107I	GGYRCC	2 cut(s)	35, 289
BssECI	CCNNGG	1 cut(s)	136
BssMI	GATC	2 cut(s)	97, 232
BssNI	GRCGYC	1 cut(s)	78
BssSI	CACGAG	1 cut(s)	20
Bst2BI	CACGAG	1 cut(s)	20
Bst2UI	CCWGG	1 cut(s)	275
Bst4CI	ACNGT	1 cut(s)	124
Bst6I	CTCTTC	2 cut(s)	74, 108
BstACI	GRCGYC	1 cut(s)	78
BstDSI	CCRYGG	1 cut(s)	136
BstF5I	GGATG	1 cut(s)	166
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	2 cut(s)	154, 300
BstKTI	GATC	2 cut(s)	100, 235
BstMBI	GATC	2 cut(s)	97, 232
BstMCI	CGRYCG	2 cut(s)	123, 235
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 163
BstNI	CCWGG	1 cut(s)	275
BstSCI	CCNGG	3 cut(s)	60, 273, 285
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	30, 139
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BsuRI	GGCC	2 cut(s)	135, 141
BtgI	CCRYGG	1 cut(s)	136
BtsCI	GGATG	1 cut(s)	166
CfoI	GCGC	2 cut(s)	154, 300
Cfr13I	GGNCC	3 cut(s)	133, 271, 283
CseI	GACGC	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	244, 311
CviJI	RGCY	7 cut(s)	65, 105, 118, 135, 141, 192, 253
CviKI_1	RGCY	7 cut(s)	65, 105, 118, 135, 141, 192, 253
CviQI	GTAC	2 cut(s)	244, 311
DpnI	GATC	2 cut(s)	99, 234
DpnII	GATC	2 cut(s)	97, 232
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
EaeI	YGGCCR	1 cut(s)	139
Eam1104I	CTCTTC	2 cut(s)	74, 108
EarI	CTCTTC	2 cut(s)	74, 108
Ecl136II	GAGCTC	1 cut(s)	253
Eco24I	GRGCYC	1 cut(s)	255
Eco47I	GGWCC	2 cut(s)	271, 283
Eco53kI	GAGCTC	1 cut(s)	253
Eco88I	CYCGRG	1 cut(s)	254
EcoICRI	GAGCTC	1 cut(s)	253
EcoO109I	RGGNCCY	1 cut(s)	283
EcoRI	GAATTC	1 cut(s)	176
EcoRII	CCWGG	1 cut(s)	273
EcoT38I	GRGCYC	1 cut(s)	255
FaqI	GGGAC	1 cut(s)	269
FauI	CCCGC	2 cut(s)	65, 123
FblI	GTMKAC	1 cut(s)	10
Fnu4HI	GCNGC	4 cut(s)	44, 81, 128, 155
FokI	GGATG	1 cut(s)	153
FriOI	GRGCYC	1 cut(s)	255
Fsp4HI	GCNGC	4 cut(s)	44, 81, 128, 155
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	2 cut(s)	153, 299
GluI	GCNGC	4 cut(s)	44, 81, 128, 155
HaeIII	GGCC	2 cut(s)	135, 141
HapII	CCGG	3 cut(s)	62, 170, 287
HgaI	GACGC	1 cut(s)	86
HhaI	GCGC	2 cut(s)	154, 300
Hin1I	GRCGYC	1 cut(s)	78
Hin6I	GCGC	2 cut(s)	152, 298
HinP1I	GCGC	2 cut(s)	152, 298
HincII	GTYRAC	2 cut(s)	11, 262
HindII	GTYRAC	2 cut(s)	11, 262
HinfI	GANTC	2 cut(s)	7, 12
HpaII	CCGG	3 cut(s)	62, 170, 287
Hpy166II	GTNNAC	4 cut(s)	11, 27, 262, 313
Hpy188I	TCNGA	1 cut(s)	217
Hpy188III	TCNNGA	3 cut(s)	170, 236, 332
Hpy8I	GTNNAC	4 cut(s)	11, 27, 262, 313
Hpy99I	CGWCG	5 cut(s)	89, 185, 200, 209, 227
HpyAV	CCTTC	1 cut(s)	262
HpyCH4III	ACNGT	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	127, 328
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 163
Hsp92I	GRCGYC	1 cut(s)	78
HspAI	GCGC	2 cut(s)	152, 298
Kpn2I	TCCGGA	1 cut(s)	169
Kzo9I	GATC	2 cut(s)	97, 232
LguI	GCTCTTC	1 cut(s)	108
LmnI	GCTCC	2 cut(s)	51, 250
LpnPI	CCDG	6 cut(s)	53, 75, 183, 260, 287, 300
Lsp1109I	GCAGC	2 cut(s)	30, 139
LweI	GCATC	3 cut(s)	175, 190, 337
MaeI	CTAG	1 cut(s)	332
MalI	GATC	2 cut(s)	99, 234
MboI	GATC	2 cut(s)	97, 232
MboII	GAAGA	2 cut(s)	61, 125
MfeI	CAATTG	1 cut(s)	303
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	1 cut(s)	255
MluCI	AATT	3 cut(s)	176, 303, 321
MlyI	GAGTC	2 cut(s)	6, 16
MnlI	CCTC	7 cut(s)	59, 64, 88, 119, 220, 232, 250
MroI	TCCGGA	1 cut(s)	169
MslI	CAYNNNNRTG	1 cut(s)	333
MspA1I	CMGCKG	1 cut(s)	130
MspI	CCGG	3 cut(s)	62, 170, 287
MspR9I	CCNGG	3 cut(s)	62, 275, 287
MunI	CAATTG	1 cut(s)	303
MvaI	CCWGG	1 cut(s)	275
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	2 cut(s)	124, 163
NciI	CCSGG	2 cut(s)	62, 287
NdeII	GATC	2 cut(s)	97, 232
NlaIV	GGNNCC	4 cut(s)	37, 134, 285, 291
NmeAIII	GCCGAG	2 cut(s)	12, 81
PaeR7I	CTCGAG	1 cut(s)	254
PciSI	GCTCTTC	1 cut(s)	108
PcsI	WCGNNNNNNNCGW	7 cut(s)	84, 108, 201, 204, 213, 228, 261
PkrI	GCNGC	4 cut(s)	45, 82, 129, 156
Ple19I	CGATCG	1 cut(s)	235
PleI	GAGTC	2 cut(s)	6, 15
PpsI	GAGTC	2 cut(s)	6, 15
PpuMI	RGGWCCY	1 cut(s)	283
Psp124BI	GAGCTC	1 cut(s)	255
Psp5II	RGGWCCY	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	273
PspGI	CCWGG	1 cut(s)	273
PspN4I	GGNNCC	4 cut(s)	37, 134, 285, 291
PspPI	GGNCC	3 cut(s)	133, 271, 283
PspPPI	RGGWCCY	1 cut(s)	283
PspXI	VCTCGAGB	1 cut(s)	254
PsuI	RGATCY	1 cut(s)	97
PvuI	CGATCG	1 cut(s)	235
RsaI	GTAC	2 cut(s)	245, 312
RsaNI	GTAC	2 cut(s)	244, 311
RseI	CAYNNNNRTG	1 cut(s)	333
SacI	GAGCTC	1 cut(s)	255
SalI	GTCGAC	1 cut(s)	9
SapI	GCTCTTC	1 cut(s)	108
SatI	GCNGC	4 cut(s)	44, 81, 128, 155
Sau3AI	GATC	2 cut(s)	97, 232
Sau96I	GGNCC	3 cut(s)	133, 271, 283
SchI	GAGTC	2 cut(s)	6, 16
ScrFI	CCNGG	3 cut(s)	62, 275, 287
SduI	GDGCHC	1 cut(s)	255
SetI	ASST	4 cut(s)	194, 255, 261, 285
SfaNI	GCATC	3 cut(s)	175, 190, 337
Sfr274I	CTCGAG	1 cut(s)	254
SinI	GGWCC	2 cut(s)	271, 283
SlaI	CTCGAG	1 cut(s)	254
SmiMI	CAYNNNNRTG	1 cut(s)	333
SmlI	CTYRAG	1 cut(s)	254
SmoI	CTYRAG	1 cut(s)	254
Sse9I	AATT	3 cut(s)	176, 303, 321
SsiI	CCGC	7 cut(s)	58, 81, 130, 150, 155, 164, 308
SspMI	CTAG	1 cut(s)	332
SstI	GAGCTC	1 cut(s)	255
StyD4I	CCNGG	3 cut(s)	60, 273, 285
TaaI	ACNGT	1 cut(s)	124
TaqI	TCGA	6 cut(s)	10, 87, 111, 180, 222, 255
TasI	AATT	3 cut(s)	176, 303, 321
TauI	GCSGC	2 cut(s)	83, 157
TseI	GCWGC	2 cut(s)	43, 127
VpaK11BI	GGWCC	2 cut(s)	271, 283
XapI	RAATTY	2 cut(s)	176, 321
XbaI	TCTAGA	1 cut(s)	331
XhoI	CTCGAG	1 cut(s)	254
XmiI	GTMKAC	1 cut(s)	10
XspI	CTAG	1 cut(s)	332

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.