Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0014853

Physical Location & Seq

Genomic Coordinates Reverse (-)

18461676 .. 18461954

Gene Structure 279 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG116600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGCGAGTCGACTCGTTCTCGTGTTCACACTGGGCGCTTTGCTCCTCCTCTCCTCCCGCCCAGCTCTCTACAAGGACGCCTCCGTCGACGACGATGAGGATCTCAGCTTCCTCGAAGAGCGACCGAGCAGGGCCACGACGCGGCGCCTCATTATCCAGATCCAAACAAATTCGATGGCAAGACCTACGACCACGCCGACAACTTCTCGGATTTCGATGAGGGCGATAATGAGGCGTACAAGGAGCCGAAAGTCGACGAGAAGGACGTCGTCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

92

Amino Acids

10.48

Weight (kDa)

11.71

Isoelectric Point (pI)

60.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014853)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0384841
rosa_multiflora	Rmu_sc0000957.1_g000003 Rmu_sc0002699.1_g000005 Rmu_sc0003021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026460 Rroxscaffold_3G00271730 Rroxscaffold_5G00365050
rosa_rugosa	Rorug04G0051900 Rorug05G0286200
rosa_samantha	Rh3DG281200 Rh4DG116600 Rh5BG368300 Rh5BG497000 Rh5CG521000 Rh7AG418800 Rh7CG438400 Rh7CG438500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	83
AatII	GACGTC	1 cut(s)	269
AccB1I	GGYRCC	1 cut(s)	144
AccI	GTMKAC	3 cut(s)	10, 87, 254
AccII	CGCG	1 cut(s)	142
AciI	CCGC	2 cut(s)	58, 142
AclWI	GGATC	2 cut(s)	108, 154
AcsI	RAATTY	1 cut(s)	169
AcyI	GRCGYC	3 cut(s)	78, 145, 266
AfaI	GTAC	1 cut(s)	238
AfiI	CCNNNNNNNGG	1 cut(s)	141
AluBI	AGCT	2 cut(s)	65, 108
AluI	AGCT	2 cut(s)	65, 108
AlwI	GGATC	2 cut(s)	108, 154
AoxI	GGCC	1 cut(s)	132
ApoI	RAATTY	1 cut(s)	169
AspLEI	GCGC	2 cut(s)	38, 147
AspS9I	GGNCC	1 cut(s)	132
BanI	GGYRCC	1 cut(s)	144
BauI	CACGAG	1 cut(s)	20
BccI	CCATC	1 cut(s)	169
BfoI	RGCGCY	2 cut(s)	39, 148
BisI	GCNGC	1 cut(s)	143
BlsI	GCNGC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	132
BmiI	GGNNCC	2 cut(s)	146, 245
BmrI	ACTGGG	1 cut(s)	41
BmuI	ACTGGG	1 cut(s)	41
BsaBI	GATNNNNATC	1 cut(s)	99
BsaHI	GRCGYC	3 cut(s)	78, 145, 266
Bsc4I	CCNNNNNNNGG	1 cut(s)	141
Bse1I	ACTGG	1 cut(s)	36
Bse8I	GATNNNNATC	1 cut(s)	99
BseJI	GATNNNNATC	1 cut(s)	99
BseLI	CCNNNNNNNGG	1 cut(s)	141
BseMII	CTCAG	1 cut(s)	118
BseNI	ACTGG	1 cut(s)	36
BseRI	GAGGAG	3 cut(s)	35, 38, 43
BseYI	CCCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	142
Bsh1285I	CGRYCG	1 cut(s)	125
BshFI	GGCC	1 cut(s)	134
BshNI	GGYRCC	1 cut(s)	144
BsiEI	CGRYCG	1 cut(s)	125
BslI	CCNNNNNNNGG	1 cut(s)	141
BsnI	GGCC	1 cut(s)	134
Bsp143I	GATC	2 cut(s)	100, 159
BspACI	CCGC	2 cut(s)	58, 142
BspANI	GGCC	1 cut(s)	134
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	142
BspLI	GGNNCC	2 cut(s)	146, 245
BspPI	GGATC	2 cut(s)	108, 154
BspQI	GCTCTTC	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	144
BsrI	ACTGG	1 cut(s)	36
BssMI	GATC	2 cut(s)	100, 159
BssNI	GRCGYC	3 cut(s)	78, 145, 266
BssSI	CACGAG	1 cut(s)	20
Bst2BI	CACGAG	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	111
BstACI	GRCGYC	3 cut(s)	78, 145, 266
BstDEI	CTNAG	1 cut(s)	104
BstFNI	CGCG	1 cut(s)	142
BstH2I	RGCGCY	2 cut(s)	39, 148
BstHHI	GCGC	2 cut(s)	38, 147
BstKTI	GATC	2 cut(s)	103, 162
BstMBI	GATC	2 cut(s)	100, 159
BstMCI	CGRYCG	1 cut(s)	125
BstUI	CGCG	1 cut(s)	142
BstX2I	RGATCY	2 cut(s)	100, 159
BstYI	RGATCY	2 cut(s)	100, 159
BsuRI	GGCC	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	29
CfoI	GCGC	2 cut(s)	38, 147
Cfr13I	GGNCC	1 cut(s)	132
CseI	GACGC	2 cut(s)	86, 148
Csp6I	GTAC	1 cut(s)	237
CviJI	RGCY	4 cut(s)	65, 108, 134, 246
CviKI_1	RGCY	4 cut(s)	65, 108, 134, 246
CviQI	GTAC	1 cut(s)	237
DdeI	CTNAG	1 cut(s)	104
DinI	GGCGCC	1 cut(s)	146
DpnI	GATC	2 cut(s)	102, 161
DpnII	GATC	2 cut(s)	100, 159
DrdI	GACNNNNNNGTC	1 cut(s)	83
DseDI	GACNNNNNNGTC	1 cut(s)	83
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
EgeI	GGCGCC	1 cut(s)	146
EheI	GGCGCC	1 cut(s)	146
FauI	CCCGC	1 cut(s)	65
FblI	GTMKAC	3 cut(s)	10, 87, 254
Fnu4HI	GCNGC	1 cut(s)	143
Fsp4HI	GCNGC	1 cut(s)	143
GlaI	GCGC	2 cut(s)	37, 146
GluI	GCNGC	1 cut(s)	143
GsaI	CCCAGC	1 cut(s)	65
HaeII	RGCGCY	2 cut(s)	39, 148
HaeIII	GGCC	1 cut(s)	134
HgaI	GACGC	2 cut(s)	86, 148
HhaI	GCGC	2 cut(s)	38, 147
Hin1I	GRCGYC	3 cut(s)	78, 145, 266
Hin6I	GCGC	2 cut(s)	36, 145
HinP1I	GCGC	2 cut(s)	36, 145
HincII	GTYRAC	3 cut(s)	11, 88, 255
HindII	GTYRAC	3 cut(s)	11, 88, 255
HinfI	GANTC	2 cut(s)	7, 12
Hpy166II	GTNNAC	4 cut(s)	11, 27, 88, 255
Hpy188I	TCNGA	1 cut(s)	210
Hpy188III	TCNNGA	1 cut(s)	157
Hpy8I	GTNNAC	4 cut(s)	11, 27, 88, 255
Hpy99I	CGWCG	6 cut(s)	89, 92, 95, 142, 259, 271
HpyAV	CCTTC	1 cut(s)	255
HpyCH4IV	ACGT	1 cut(s)	266
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	1 cut(s)	266
Hsp92I	GRCGYC	3 cut(s)	78, 145, 266
HspAI	GCGC	2 cut(s)	36, 145
KasI	GGCGCC	1 cut(s)	144
Kzo9I	GATC	2 cut(s)	100, 159
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	2 cut(s)	48, 243
LpnPI	CCDG	4 cut(s)	17, 75, 115, 170
MaeII	ACGT	1 cut(s)	266
MalI	GATC	2 cut(s)	102, 161
MboI	GATC	2 cut(s)	100, 159
MboII	GAAGA	1 cut(s)	128
MflI	RGATCY	2 cut(s)	100, 159
MluCI	AATT	1 cut(s)	169
Mly113I	GGCGCC	1 cut(s)	145
MlyI	GAGTC	2 cut(s)	6, 16
MnlI	CCTC	9 cut(s)	56, 59, 64, 91, 91, 122, 158, 213, 225
MvnI	CGCG	1 cut(s)	142
NarI	GGCGCC	1 cut(s)	145
NdeII	GATC	2 cut(s)	100, 159
NlaIV	GGNNCC	2 cut(s)	146, 245
PciSI	GCTCTTC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	4 cut(s)	84, 194, 221, 263
PflFI	GACNNNGTC	1 cut(s)	268
PkrI	GCNGC	1 cut(s)	144
PleI	GAGTC	2 cut(s)	6, 15
PluTI	GGCGCC	1 cut(s)	148
PpsI	GAGTC	2 cut(s)	6, 15
PspFI	CCCAGC	1 cut(s)	61
PspN4I	GGNNCC	2 cut(s)	146, 245
PspPI	GGNCC	1 cut(s)	132
PsuI	RGATCY	2 cut(s)	100, 159
PsyI	GACNNNGTC	1 cut(s)	268
RsaI	GTAC	1 cut(s)	238
RsaNI	GTAC	1 cut(s)	237
SalI	GTCGAC	3 cut(s)	9, 86, 253
SapI	GCTCTTC	1 cut(s)	111
SatI	GCNGC	1 cut(s)	143
Sau3AI	GATC	2 cut(s)	100, 159
Sau96I	GGNCC	1 cut(s)	132
SchI	GAGTC	2 cut(s)	6, 16
SetI	ASST	4 cut(s)	67, 110, 187, 269
SfoI	GGCGCC	1 cut(s)	146
SgrDI	CGTCGACG	1 cut(s)	86
Sse9I	AATT	1 cut(s)	169
SsiI	CCGC	2 cut(s)	58, 142
SspDI	GGCGCC	1 cut(s)	144
TaiI	ACGT	1 cut(s)	269
TaqI	TCGA	6 cut(s)	10, 87, 114, 173, 215, 254
TaqII	GACCGA	1 cut(s)	139
TasI	AATT	1 cut(s)	169
TauI	GCSGC	1 cut(s)	145
TscAI	CASTG	1 cut(s)	36
TspGWI	ACGGA	1 cut(s)	73
TspRI	CASTG	1 cut(s)	36
Tth111I	GACNNNGTC	1 cut(s)	268
XapI	RAATTY	1 cut(s)	169
XmiI	GTMKAC	3 cut(s)	10, 87, 254
ZraI	GACGTC	1 cut(s)	267

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.