Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0014853

Physical Location & Seq

Genomic Coordinates Reverse (-)

57753540 .. 57753860

Gene Structure 321 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG368300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGCCCCTCTCCTCCTGCCCATCTCTTTGCAAGGAGACCATCGACGCGGAGGAGGATCTAAACTTCCTTAAAGAGCCAACCGAGCAGAGCCACGACGTGTCGCACTATCTAAATCCAGACCAATTCGATGGCGAGAACTACGATGATGCTGATGACTTCTTTGATTTCGAAGAGGGCGACCAGGAGGGGCACAACGAGCCGGAGGATGGCAAGAAGCACGTCATCGTTTTGAAGGGGGCGAACTTCAACGAGACCATGAAGAAGAACATGTGTTTGGGGGCGAAAGCCAGGGTTTTGGGCCCGAAAGTGTTCGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

106

Amino Acids

11.97

Weight (kDa)

4.41

Isoelectric Point (pI)

46.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014853)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0384841
rosa_multiflora	Rmu_sc0000957.1_g000003 Rmu_sc0002699.1_g000005 Rmu_sc0003021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026460 Rroxscaffold_3G00271730 Rroxscaffold_5G00365050
rosa_rugosa	Rorug04G0051900 Rorug05G0286200
rosa_samantha	Rh3DG281200 Rh4DG116600 Rh5BG368300 Rh5BG497000 Rh5CG521000 Rh7AG418800 Rh7CG438400 Rh7CG438500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	47
AciI	CCGC	1 cut(s)	47
AclWI	GGATC	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	97
AfiI	CCNNNNNNNGG	1 cut(s)	206
AflIII	ACRYGT	2 cut(s)	96, 267
AgsI	TTSAA	2 cut(s)	232, 247
AjiI	CACGTC	2 cut(s)	97, 220
AjnI	CCWGG	2 cut(s)	180, 287
AjuI	GAANNNNNNNTTGG	2 cut(s)	257, 289
Alw26I	GTCTC	2 cut(s)	29, 245
AlwI	GGATC	1 cut(s)	63
AoxI	GGCC	1 cut(s)	298
ApaI	GGGCCC	1 cut(s)	302
Asp700I	GAANNNNTTC	1 cut(s)	308
AspS9I	GGNCC	2 cut(s)	298, 299
AsuII	TTCGAA	1 cut(s)	168
BaeGI	GKGCMC	2 cut(s)	192, 302
BanII	GRGCYC	1 cut(s)	302
BccI	CCATC	4 cut(s)	28, 47, 122, 200
BciT130I	CCWGG	2 cut(s)	182, 289
BcoDI	GTCTC	2 cut(s)	29, 245
Bme1390I	CCNGG	2 cut(s)	182, 289
BmgBI	CACGTC	2 cut(s)	97, 220
BmgT120I	GGNCC	2 cut(s)	298, 299
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	2 cut(s)	182, 289
BmsI	GCATC	1 cut(s)	136
Bpu14I	TTCGAA	1 cut(s)	168
BsaI	GGTCTC	2 cut(s)	29, 245
BsaJI	CCNNGG	1 cut(s)	288
Bsc4I	CCNNNNNNNGG	1 cut(s)	206
BseBI	CCWGG	2 cut(s)	182, 289
BseDI	CCNNGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	211
BseLI	CCNNNNNNNGG	1 cut(s)	206
BseRI	GAGGAG	1 cut(s)	65
BseSI	GKGCMC	2 cut(s)	192, 302
Bsh1236I	CGCG	1 cut(s)	47
BshFI	GGCC	1 cut(s)	300
BsiSI	CCGG	1 cut(s)	200
BslI	CCNNNNNNNGG	1 cut(s)	206
BsmAI	GTCTC	2 cut(s)	29, 245
BsnI	GGCC	1 cut(s)	300
Bso31I	GGTCTC	2 cut(s)	29, 245
Bsp119I	TTCGAA	1 cut(s)	168
Bsp120I	GGGCCC	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	192, 302
Bsp143I	GATC	1 cut(s)	55
BspACI	CCGC	1 cut(s)	47
BspANI	GGCC	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	47
BspLI	GGNNCC	1 cut(s)	300
BspPI	GGATC	1 cut(s)	63
BspT104I	TTCGAA	1 cut(s)	168
BspTNI	GGTCTC	2 cut(s)	29, 245
BssECI	CCNNGG	1 cut(s)	288
BssMI	GATC	1 cut(s)	55
Bst2UI	CCWGG	2 cut(s)	182, 289
Bst6I	CTCTTC	1 cut(s)	165
BstBI	TTCGAA	1 cut(s)	168
BstF5I	GGATG	1 cut(s)	211
BstFNI	CGCG	1 cut(s)	47
BstKTI	GATC	1 cut(s)	58
BstMAI	GTCTC	2 cut(s)	29, 245
BstMBI	GATC	1 cut(s)	55
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 196
BstNI	CCWGG	2 cut(s)	182, 289
BstNSI	RCATGY	1 cut(s)	271
BstSCI	CCNGG	2 cut(s)	180, 287
BstSLI	GKGCMC	2 cut(s)	192, 302
BstUI	CGCG	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	55
BstXI	CCANNNNNNTGG	2 cut(s)	128, 295
BstYI	RGATCY	1 cut(s)	55
BsuRI	GGCC	1 cut(s)	300
BtrI	CACGTC	2 cut(s)	97, 220
BtsCI	GGATG	1 cut(s)	211
Cfr13I	GGNCC	2 cut(s)	298, 299
CseI	GACGC	1 cut(s)	53
CviAII	CATG	2 cut(s)	256, 268
CviJI	RGCY	5 cut(s)	76, 90, 199, 287, 300
CviKI_1	RGCY	5 cut(s)	76, 90, 199, 287, 300
DpnI	GATC	1 cut(s)	57
DpnII	GATC	1 cut(s)	55
DraIII	CACNNNGTG	1 cut(s)	97
Eam1104I	CTCTTC	1 cut(s)	165
EarI	CTCTTC	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	302
Eco31I	GGTCTC	2 cut(s)	29, 245
EcoRII	CCWGG	2 cut(s)	180, 287
EcoT38I	GRGCYC	1 cut(s)	302
FaeI	CATG	2 cut(s)	259, 271
FaiI	YATR	2 cut(s)	257, 269
FatI	CATG	2 cut(s)	255, 267
FokI	GGATG	1 cut(s)	218
FriOI	GRGCYC	1 cut(s)	302
HaeIII	GGCC	1 cut(s)	300
HapII	CCGG	1 cut(s)	200
HgaI	GACGC	1 cut(s)	53
Hin1II	CATG	2 cut(s)	259, 271
HpaII	CCGG	1 cut(s)	200
Hpy188III	TCNNGA	1 cut(s)	116
Hpy99I	CGWCG	2 cut(s)	47, 98
HpyAV	CCTTC	1 cut(s)	226
HpyCH4IV	ACGT	2 cut(s)	96, 219
HpyCH4V	TGCA	1 cut(s)	30
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 196
HpySE526I	ACGT	2 cut(s)	96, 219
Hsp92II	CATG	2 cut(s)	259, 271
Kzo9I	GATC	1 cut(s)	55
LpnPI	CCDG	7 cut(s)	28, 129, 167, 194, 213, 274, 301
LweI	GCATC	1 cut(s)	136
MaeII	ACGT	2 cut(s)	96, 219
MalI	GATC	1 cut(s)	57
MboI	GATC	1 cut(s)	55
MboII	GAAGA	3 cut(s)	182, 271, 274
MflI	RGATCY	1 cut(s)	55
MhlI	GDGCHC	2 cut(s)	192, 302
MluCI	AATT	1 cut(s)	122
MnlI	CCTC	7 cut(s)	17, 22, 43, 46, 166, 178, 196
MroXI	GAANNNNTTC	1 cut(s)	308
MseI	TTAA	1 cut(s)	69
MspI	CCGG	1 cut(s)	200
MspR9I	CCNGG	2 cut(s)	182, 289
MvaI	CCWGG	2 cut(s)	182, 289
MvnI	CGCG	1 cut(s)	47
MwoI	GCNNNNNNNGC	2 cut(s)	82, 196
NdeII	GATC	1 cut(s)	55
NlaIII	CATG	2 cut(s)	259, 271
NlaIV	GGNNCC	1 cut(s)	300
NspI	RCATGY	1 cut(s)	271
NspV	TTCGAA	1 cut(s)	168
PciI	ACATGT	1 cut(s)	267
PcsI	WCGNNNNNNNCGW	1 cut(s)	174
PdmI	GAANNNNTTC	1 cut(s)	308
PscI	ACATGT	1 cut(s)	267
Psp6I	CCWGG	2 cut(s)	180, 287
PspGI	CCWGG	2 cut(s)	180, 287
PspN4I	GGNNCC	1 cut(s)	300
PspOMI	GGGCCC	1 cut(s)	298
PspPI	GGNCC	2 cut(s)	298, 299
PsuI	RGATCY	1 cut(s)	55
SaqAI	TTAA	1 cut(s)	69
Sau3AI	GATC	1 cut(s)	55
Sau96I	GGNCC	2 cut(s)	298, 299
ScrFI	CCNGG	2 cut(s)	182, 289
SduI	GDGCHC	2 cut(s)	192, 302
SetI	ASST	2 cut(s)	99, 222
SfaNI	GCATC	1 cut(s)	136
SfuI	TTCGAA	1 cut(s)	168
Sse9I	AATT	1 cut(s)	122
SsiI	CCGC	1 cut(s)	47
StyD4I	CCNGG	2 cut(s)	180, 287
TaiI	ACGT	2 cut(s)	99, 222
TaqI	TCGA	3 cut(s)	42, 126, 168
TasI	AATT	1 cut(s)	122
Tru1I	TTAA	1 cut(s)	69
Tru9I	TTAA	1 cut(s)	69
TspDTI	ATGAA	1 cut(s)	272
XceI	RCATGY	1 cut(s)	271
XmnI	GAANNNNTTC	1 cut(s)	308

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.