Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0014853

Physical Location & Seq

Genomic Coordinates Reverse (-)

28560818 .. 28561725

Gene Structure 908 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG281200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGCGAGTCGACTCGTTCTCGTGTTCACACTCGGCGCTTTGATCCTCCTCTCCTCCCGCCCAGCTCTCTGCAAGGACATCACCTTCGACGACGACGAGCATCTCAGCTTCCTCGAAGAGCAGACCGAGCAGGTCCATGACGCGGCGCCTCACTATCCAGATCCAGACAAATTCGACGGCGAGACCTACGACGACACCGACGACTTCTCCGATTTCGATGAGGGCGATCATGAGGCGTACAAGGAGCCGGAGGTCGACGAGAAGGACGTCGTCGTTTTGAAGGGGCCGTACTTTAGCCAAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

101

Amino Acids

11.49

Weight (kDa)

4.05

Isoelectric Point (pI)

40.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014853)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0384841
rosa_multiflora	Rmu_sc0000957.1_g000003 Rmu_sc0002699.1_g000005 Rmu_sc0003021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026460 Rroxscaffold_3G00271730 Rroxscaffold_5G00365050
rosa_rugosa	Rorug04G0051900 Rorug05G0286200
rosa_samantha	Rh3DG281200 Rh4DG116600 Rh5BG368300 Rh5BG497000 Rh5CG521000 Rh7AG418800 Rh7CG438400 Rh7CG438500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	270
Acc36I	ACCTGC	1 cut(s)	121
AccB1I	GGYRCC	1 cut(s)	145
AccI	GTMKAC	2 cut(s)	10, 255
AccII	CGCG	1 cut(s)	143
AciI	CCGC	2 cut(s)	58, 143
AclWI	GGATC	2 cut(s)	37, 155
AcsI	RAATTY	1 cut(s)	170
AcyI	GRCGYC	2 cut(s)	146, 267
AfaI	GTAC	2 cut(s)	239, 290
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgsI	TTSAA	1 cut(s)	280
AluBI	AGCT	2 cut(s)	65, 108
AluI	AGCT	2 cut(s)	65, 108
Alw26I	GTCTC	1 cut(s)	176
AlwI	GGATC	2 cut(s)	37, 155
AoxI	GGCC	1 cut(s)	284
ApoI	RAATTY	1 cut(s)	170
ArsI	GACNNNNNNTTYG	2 cut(s)	68, 100
AspLEI	GCGC	2 cut(s)	38, 148
AspS9I	GGNCC	2 cut(s)	133, 284
AsuHPI	GGTGA	1 cut(s)	73
AvaII	GGWCC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	145
BarI	GAAGNNNNNNTAC	2 cut(s)	272, 304
BauI	CACGAG	1 cut(s)	20
BceAI	ACGGC	2 cut(s)	193, 271
BcoDI	GTCTC	1 cut(s)	176
BfoI	RGCGCY	2 cut(s)	39, 149
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme18I	GGWCC	1 cut(s)	133
BmgT120I	GGNCC	2 cut(s)	133, 284
BmiI	GGNNCC	3 cut(s)	147, 246, 285
BmsI	GCATC	1 cut(s)	109
BsaHI	GRCGYC	2 cut(s)	146, 267
BsaI	GGTCTC	1 cut(s)	176
BsaXI	ACNNNNNCTCC	2 cut(s)	191, 221
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	118
BseRI	GAGGAG	2 cut(s)	38, 43
BseYI	CCCAGC	1 cut(s)	61
Bsh1236I	CGCG	1 cut(s)	143
BshFI	GGCC	1 cut(s)	286
BshNI	GGYRCC	1 cut(s)	145
BsiSI	CCGG	1 cut(s)	248
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	286
Bso31I	GGTCTC	1 cut(s)	176
Bsp143I	GATC	3 cut(s)	42, 160, 226
BspACI	CCGC	2 cut(s)	58, 143
BspANI	GGCC	1 cut(s)	286
BspCNI	CTCAG	1 cut(s)	117
BspFNI	CGCG	1 cut(s)	143
BspHI	TCATGA	1 cut(s)	229
BspLI	GGNNCC	3 cut(s)	147, 246, 285
BspMI	ACCTGC	1 cut(s)	121
BspPI	GGATC	2 cut(s)	37, 155
BspQI	GCTCTTC	1 cut(s)	111
BspT107I	GGYRCC	1 cut(s)	145
BspTNI	GGTCTC	1 cut(s)	176
BssMI	GATC	3 cut(s)	42, 160, 226
BssNI	GRCGYC	2 cut(s)	146, 267
BssSI	CACGAG	1 cut(s)	20
Bst2BI	CACGAG	1 cut(s)	20
Bst6I	CTCTTC	1 cut(s)	111
BstACI	GRCGYC	2 cut(s)	146, 267
BstDEI	CTNAG	1 cut(s)	104
BstFNI	CGCG	1 cut(s)	143
BstH2I	RGCGCY	2 cut(s)	39, 149
BstHHI	GCGC	2 cut(s)	38, 148
BstKTI	GATC	3 cut(s)	45, 163, 229
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	3 cut(s)	42, 160, 226
BstMWI	GCNNNNNNNGC	1 cut(s)	127
BstUI	CGCG	1 cut(s)	143
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BsuRI	GGCC	1 cut(s)	286
BveI	ACCTGC	1 cut(s)	121
CciI	TCATGA	1 cut(s)	229
CfoI	GCGC	2 cut(s)	38, 148
Cfr13I	GGNCC	2 cut(s)	133, 284
CseI	GACGC	1 cut(s)	149
Csp6I	GTAC	2 cut(s)	238, 289
CviAII	CATG	2 cut(s)	137, 230
CviJI	RGCY	5 cut(s)	65, 108, 247, 286, 297
CviKI_1	RGCY	5 cut(s)	65, 108, 247, 286, 297
CviQI	GTAC	2 cut(s)	238, 289
DdeI	CTNAG	1 cut(s)	104
DinI	GGCGCC	1 cut(s)	147
DpnI	GATC	3 cut(s)	44, 162, 228
DpnII	GATC	3 cut(s)	42, 160, 226
Eam1104I	CTCTTC	1 cut(s)	111
EarI	CTCTTC	1 cut(s)	111
Eco31I	GGTCTC	1 cut(s)	176
Eco47I	GGWCC	1 cut(s)	133
EgeI	GGCGCC	1 cut(s)	147
EheI	GGCGCC	1 cut(s)	147
FaeI	CATG	2 cut(s)	140, 233
FaiI	YATR	2 cut(s)	138, 231
FatI	CATG	2 cut(s)	136, 229
FauI	CCCGC	1 cut(s)	65
FblI	GTMKAC	2 cut(s)	10, 255
Fnu4HI	GCNGC	1 cut(s)	144
Fsp4HI	GCNGC	1 cut(s)	144
GlaI	GCGC	2 cut(s)	37, 147
GluI	GCNGC	1 cut(s)	144
GsaI	CCCAGC	1 cut(s)	65
HaeII	RGCGCY	2 cut(s)	39, 149
HaeIII	GGCC	1 cut(s)	286
HapII	CCGG	1 cut(s)	248
HgaI	GACGC	1 cut(s)	149
HhaI	GCGC	2 cut(s)	38, 148
Hin1I	GRCGYC	2 cut(s)	146, 267
Hin1II	CATG	2 cut(s)	140, 233
Hin6I	GCGC	2 cut(s)	36, 146
HinP1I	GCGC	2 cut(s)	36, 146
HincII	GTYRAC	2 cut(s)	11, 256
HindII	GTYRAC	2 cut(s)	11, 256
HinfI	GANTC	2 cut(s)	7, 12
HpaII	CCGG	1 cut(s)	248
HphI	GGTGA	1 cut(s)	73
Hpy166II	GTNNAC	3 cut(s)	11, 27, 256
Hpy188I	TCNGA	1 cut(s)	211
Hpy188III	TCNNGA	3 cut(s)	158, 164, 230
Hpy8I	GTNNAC	3 cut(s)	11, 27, 256
Hpy99I	CGWCG	9 cut(s)	92, 95, 98, 179, 194, 203, 260, 272, 275
HpyAV	CCTTC	3 cut(s)	94, 256, 274
HpyCH4IV	ACGT	2 cut(s)	267, 302
HpyCH4V	TGCA	1 cut(s)	72
HpyF10VI	GCNNNNNNNGC	1 cut(s)	127
HpyF3I	CTNAG	1 cut(s)	104
HpySE526I	ACGT	2 cut(s)	267, 302
Hsp92I	GRCGYC	2 cut(s)	146, 267
Hsp92II	CATG	2 cut(s)	140, 233
HspAI	GCGC	2 cut(s)	36, 146
KasI	GGCGCC	1 cut(s)	145
Kzo9I	GATC	3 cut(s)	42, 160, 226
LguI	GCTCTTC	1 cut(s)	111
LmnI	GCTCC	1 cut(s)	244
LpnPI	CCDG	5 cut(s)	75, 116, 171, 177, 261
LweI	GCATC	1 cut(s)	109
MaeII	ACGT	2 cut(s)	267, 302
MalI	GATC	3 cut(s)	44, 162, 228
MboI	GATC	3 cut(s)	42, 160, 226
MboII	GAAGA	1 cut(s)	128
MflI	RGATCY	1 cut(s)	160
MluCI	AATT	1 cut(s)	170
Mly113I	GGCGCC	1 cut(s)	146
MlyI	GAGTC	2 cut(s)	6, 16
MnlI	CCTC	8 cut(s)	56, 59, 64, 122, 159, 214, 226, 244
MspI	CCGG	1 cut(s)	248
MvnI	CGCG	1 cut(s)	143
MwoI	GCNNNNNNNGC	1 cut(s)	127
NarI	GGCGCC	1 cut(s)	146
NdeII	GATC	3 cut(s)	42, 160, 226
NlaIII	CATG	2 cut(s)	140, 233
NlaIV	GGNNCC	3 cut(s)	147, 246, 285
NmeAIII	GCCGAG	1 cut(s)	12
PagI	TCATGA	1 cut(s)	229
PciSI	GCTCTTC	1 cut(s)	111
PcsI	WCGNNNNNNNCGW	6 cut(s)	93, 195, 198, 207, 222, 264
PflFI	GACNNNGTC	1 cut(s)	269
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	2 cut(s)	6, 15
PluTI	GGCGCC	1 cut(s)	149
PpsI	GAGTC	2 cut(s)	6, 15
PspFI	CCCAGC	1 cut(s)	61
PspN4I	GGNNCC	3 cut(s)	147, 246, 285
PspPI	GGNCC	2 cut(s)	133, 284
PsuI	RGATCY	1 cut(s)	160
PsyI	GACNNNGTC	1 cut(s)	269
RsaI	GTAC	2 cut(s)	239, 290
RsaNI	GTAC	2 cut(s)	238, 289
SalI	GTCGAC	2 cut(s)	9, 254
SapI	GCTCTTC	1 cut(s)	111
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	3 cut(s)	42, 160, 226
Sau96I	GGNCC	2 cut(s)	133, 284
SchI	GAGTC	2 cut(s)	6, 16
SetI	ASST	8 cut(s)	67, 86, 110, 135, 188, 255, 270, 305
SfaNI	GCATC	1 cut(s)	109
SfoI	GGCGCC	1 cut(s)	147
SinI	GGWCC	1 cut(s)	133
Sse9I	AATT	1 cut(s)	170
SsiI	CCGC	2 cut(s)	58, 143
SspDI	GGCGCC	1 cut(s)	145
TaiI	ACGT	2 cut(s)	270, 305
TaqI	TCGA	6 cut(s)	10, 87, 114, 174, 216, 255
TaqII	GACCGA	1 cut(s)	140
TasI	AATT	1 cut(s)	170
TauI	GCSGC	1 cut(s)	146
Tth111I	GACNNNGTC	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	133
XapI	RAATTY	1 cut(s)	170
XmiI	GTMKAC	2 cut(s)	10, 255
ZraI	GACGTC	1 cut(s)	268

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.