Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002699.1

Orthogroup ID

OG0014853

Physical Location & Seq

Genomic Coordinates Reverse (-)

13914 .. 15755

Gene Structure 1842 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002699.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

atggactcctcgtcctccatttctattaaaccgccactaaaaccatatctcaatcttccagtctctctgatcattcctcttctcactcactccaaaatggcgagtcgactcgttctcgtgttcacactgggcgctttgctcctcctctcctcccgcccagctctctgcaaggacgccgccgtcgacgacgacgaggatctcagcttcctggaagagccgaccgagcagggccatgacgcggcgcctcactatccagatccagacaaattcgacggcgagacctacgacgatgacgatgacaaattctccgatttccatgagggcgatcatgaggcgtacaaggagacggaagtcgacgagaaggacgtcgtcgttttgaaggggtcgtactttagcgagacggagccggaggttgagcttgaaggaggtgagatcgatggagataagatcaatgctaggtgggttccttgggcttcaaggagagatgagccattgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003756 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005774 GO:0005783 GO:0006457 GO:0006950 GO:0006979 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0012505 GO:0016020 GO:0016853 GO:0016860 GO:0016864 GO:0031090 GO:0033554 GO:0034976 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0051716 GO:0098588 GO:0098805 GO:0140096

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

Thioredoxin Thioredoxin_6

Protein Analysis

165

Amino Acids

18.45

Weight (kDa)

4.25

Isoelectric Point (pI)

46.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014853)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0384841
rosa_multiflora	Rmu_sc0000957.1_g000003 Rmu_sc0002699.1_g000005 Rmu_sc0003021.1_g000001
rosa_roxburghii	Rroxscaffold_1G00026460 Rroxscaffold_3G00271730 Rroxscaffold_5G00365050
rosa_rugosa	Rorug04G0051900 Rorug05G0286200
rosa_samantha	Rh3DG281200 Rh4DG116600 Rh5BG368300 Rh5BG497000 Rh5CG521000 Rh7AG418800 Rh7CG438400 Rh7CG438500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	179
AatII	GACGTC	1 cut(s)	369
AccB1I	GGYRCC	1 cut(s)	241
AccI	GTMKAC	3 cut(s)	106, 183, 354
AccII	CGCG	1 cut(s)	239
AciI	CCGC	4 cut(s)	32, 154, 177, 239
AclWI	GGATC	2 cut(s)	204, 251
AcsI	RAATTY	2 cut(s)	266, 302
AcyI	GRCGYC	3 cut(s)	174, 242, 366
AfaI	GTAC	2 cut(s)	338, 389
AfiI	CCNNNNNNNGG	1 cut(s)	238
AgsI	TTSAA	3 cut(s)	379, 422, 477
AhdI	GACNNNNNGTC	1 cut(s)	10
AjnI	CCWGG	1 cut(s)	207
AluBI	AGCT	3 cut(s)	161, 204, 418
AluI	AGCT	3 cut(s)	161, 204, 418
Alw26I	GTCTC	4 cut(s)	67, 272, 338, 392
AlwI	GGATC	2 cut(s)	204, 251
AoxI	GGCC	1 cut(s)	229
ApoI	RAATTY	2 cut(s)	266, 302
AspLEI	GCGC	2 cut(s)	134, 244
AspS9I	GGNCC	1 cut(s)	229
AsuHPI	GGTGA	1 cut(s)	440
BanI	GGYRCC	1 cut(s)	241
BarI	GAAGNNNNNNTAC	2 cut(s)	371, 403
BauI	CACGAG	1 cut(s)	116
BccI	CCATC	1 cut(s)	431
BceAI	ACGGC	2 cut(s)	164, 289
BciT130I	CCWGG	1 cut(s)	209
BclI	TGATCA	1 cut(s)	69
BcoDI	GTCTC	4 cut(s)	67, 272, 338, 392
BfaI	CTAG	1 cut(s)	456
BfoI	RGCGCY	2 cut(s)	135, 245
BisI	GCNGC	2 cut(s)	177, 240
BlsI	GCNGC	2 cut(s)	178, 241
Bme1390I	CCNGG	1 cut(s)	209
BmeRI	GACNNNNNGTC	1 cut(s)	10
BmgT120I	GGNCC	1 cut(s)	229
BmiI	GGNNCC	3 cut(s)	243, 405, 465
BmrFI	CCNGG	1 cut(s)	209
BmrI	ACTGGG	1 cut(s)	137
BmuI	ACTGGG	1 cut(s)	137
BoxI	GACNNNNGTC	1 cut(s)	350
Bsa29I	ATCGAT	1 cut(s)	435
BsaHI	GRCGYC	3 cut(s)	174, 242, 366
BsaI	GGTCTC	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	467
BsaXI	ACNNNNNCTCC	2 cut(s)	290, 320
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	2 cut(s)	59, 132
BseBI	CCWGG	1 cut(s)	209
BseCI	ATCGAT	1 cut(s)	435
BseDI	CCNNGG	1 cut(s)	467
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	1 cut(s)	214
BseNI	ACTGG	2 cut(s)	59, 132
BseRI	GAGGAG	3 cut(s)	131, 134, 139
BseYI	CCCAGC	1 cut(s)	157
Bsh1236I	CGCG	1 cut(s)	239
Bsh1285I	CGRYCG	1 cut(s)	222
BshFI	GGCC	1 cut(s)	231
BshNI	GGYRCC	1 cut(s)	241
BshVI	ATCGAT	1 cut(s)	435
BsiEI	CGRYCG	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	407
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	4 cut(s)	67, 272, 338, 392
BsmBI	CGTCTC	2 cut(s)	338, 392
BsnI	GGCC	1 cut(s)	231
Bso31I	GGTCTC	1 cut(s)	272
Bsp143I	GATC	6 cut(s)	69, 196, 256, 325, 432, 447
BspACI	CCGC	4 cut(s)	32, 154, 177, 239
BspANI	GGCC	1 cut(s)	231
BspCNI	CTCAG	1 cut(s)	213
BspDI	ATCGAT	1 cut(s)	435
BspFNI	CGCG	1 cut(s)	239
BspHI	TCATGA	1 cut(s)	328
BspLI	GGNNCC	3 cut(s)	243, 405, 465
BspPI	GGATC	2 cut(s)	204, 251
BspQI	GCTCTTC	1 cut(s)	207
BspT107I	GGYRCC	1 cut(s)	241
BspTNI	GGTCTC	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	59, 132
BssECI	CCNNGG	1 cut(s)	467
BssMI	GATC	6 cut(s)	69, 196, 256, 325, 432, 447
BssNI	GRCGYC	3 cut(s)	174, 242, 366
BssSI	CACGAG	1 cut(s)	116
BssT1I	CCWWGG	1 cut(s)	467
Bst2BI	CACGAG	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	209
Bst6I	CTCTTC	2 cut(s)	84, 207
BstACI	GRCGYC	3 cut(s)	174, 242, 366
BstDEI	CTNAG	1 cut(s)	200
BstFNI	CGCG	1 cut(s)	239
BstH2I	RGCGCY	2 cut(s)	135, 245
BstHHI	GCGC	2 cut(s)	134, 244
BstKTI	GATC	6 cut(s)	72, 199, 259, 328, 435, 450
BstMAI	GTCTC	4 cut(s)	67, 272, 338, 392
BstMBI	GATC	6 cut(s)	69, 196, 256, 325, 432, 447
BstMCI	CGRYCG	1 cut(s)	222
BstMWI	GCNNNNNNNGC	1 cut(s)	223
BstNI	CCWGG	1 cut(s)	209
BstPAI	GACNNNNGTC	1 cut(s)	350
BstSCI	CCNGG	1 cut(s)	207
BstUI	CGCG	1 cut(s)	239
BstX2I	RGATCY	2 cut(s)	196, 256
BstYI	RGATCY	2 cut(s)	196, 256
Bsu15I	ATCGAT	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	231
BsuTUI	ATCGAT	1 cut(s)	435
BtsIMutI	CAGTG	1 cut(s)	125
CciI	TCATGA	1 cut(s)	328
CfoI	GCGC	2 cut(s)	134, 244
Cfr13I	GGNCC	1 cut(s)	229
ClaI	ATCGAT	1 cut(s)	435
CseI	GACGC	2 cut(s)	182, 245
Csp6I	GTAC	2 cut(s)	337, 388
CviAII	CATG	3 cut(s)	233, 317, 329
CviJI	RGCY	8 cut(s)	161, 204, 217, 231, 406, 418, 473, 490
CviKI_1	RGCY	8 cut(s)	161, 204, 217, 231, 406, 418, 473, 490
CviQI	GTAC	2 cut(s)	337, 388
DdeI	CTNAG	1 cut(s)	200
DinI	GGCGCC	1 cut(s)	243
DpnI	GATC	6 cut(s)	71, 198, 258, 327, 434, 449
DpnII	GATC	6 cut(s)	69, 196, 256, 325, 432, 447
DrdI	GACNNNNNNGTC	1 cut(s)	179
DriI	GACNNNNNGTC	1 cut(s)	10
DseDI	GACNNNNNNGTC	1 cut(s)	179
Eam1104I	CTCTTC	2 cut(s)	84, 207
Eam1105I	GACNNNNNGTC	1 cut(s)	10
EarI	CTCTTC	2 cut(s)	84, 207
Eco130I	CCWWGG	1 cut(s)	467
Eco31I	GGTCTC	1 cut(s)	272
EcoRII	CCWGG	1 cut(s)	207
EcoT14I	CCWWGG	1 cut(s)	467
EgeI	GGCGCC	1 cut(s)	243
EheI	GGCGCC	1 cut(s)	243
ErhI	CCWWGG	1 cut(s)	467
Esp3I	CGTCTC	2 cut(s)	338, 392
FaeI	CATG	3 cut(s)	236, 320, 332
FaiI	YATR	4 cut(s)	46, 234, 318, 330
FatI	CATG	3 cut(s)	232, 316, 328
FauI	CCCGC	1 cut(s)	161
FbaI	TGATCA	1 cut(s)	69
FblI	GTMKAC	3 cut(s)	106, 183, 354
Fnu4HI	GCNGC	2 cut(s)	177, 240
Fsp4HI	GCNGC	2 cut(s)	177, 240
FspBI	CTAG	1 cut(s)	456
GlaI	GCGC	2 cut(s)	133, 243
GluI	GCNGC	2 cut(s)	177, 240
GsaI	CCCAGC	1 cut(s)	161
HaeII	RGCGCY	2 cut(s)	135, 245
HaeIII	GGCC	1 cut(s)	231
HapII	CCGG	1 cut(s)	407
HgaI	GACGC	2 cut(s)	182, 245
HhaI	GCGC	2 cut(s)	134, 244
Hin1I	GRCGYC	3 cut(s)	174, 242, 366
Hin1II	CATG	3 cut(s)	236, 320, 332
Hin6I	GCGC	2 cut(s)	132, 242
HinP1I	GCGC	2 cut(s)	132, 242
HincII	GTYRAC	3 cut(s)	107, 184, 355
HindII	GTYRAC	3 cut(s)	107, 184, 355
HinfI	GANTC	3 cut(s)	5, 103, 108
HpaII	CCGG	1 cut(s)	407
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	4 cut(s)	107, 123, 184, 355
Hpy188I	TCNGA	2 cut(s)	69, 310
Hpy188III	TCNNGA	3 cut(s)	254, 260, 329
Hpy8I	GTNNAC	4 cut(s)	107, 123, 184, 355
Hpy99I	CGWCG	9 cut(s)	185, 188, 191, 194, 275, 290, 359, 371, 374
HpyAV	CCTTC	3 cut(s)	355, 373, 416
HpyCH4IV	ACGT	1 cut(s)	366
HpyCH4V	TGCA	1 cut(s)	168
HpyF10VI	GCNNNNNNNGC	1 cut(s)	223
HpyF3I	CTNAG	1 cut(s)	200
HpySE526I	ACGT	1 cut(s)	366
Hsp92I	GRCGYC	3 cut(s)	174, 242, 366
Hsp92II	CATG	3 cut(s)	236, 320, 332
HspAI	GCGC	2 cut(s)	132, 242
KasI	GGCGCC	1 cut(s)	241
Ksp22I	TGATCA	1 cut(s)	69
Kzo9I	GATC	6 cut(s)	69, 196, 256, 325, 432, 447
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	2 cut(s)	144, 403
LpnPI	CCDG	9 cut(s)	72, 113, 171, 194, 212, 221, 267, 273, 420
MaeI	CTAG	1 cut(s)	456
MaeII	ACGT	1 cut(s)	366
MalI	GATC	6 cut(s)	71, 198, 258, 327, 434, 449
MboI	GATC	6 cut(s)	69, 196, 256, 325, 432, 447
MboII	GAAGA	3 cut(s)	47, 71, 224
MflI	RGATCY	2 cut(s)	196, 256
MluCI	AATT	2 cut(s)	266, 302
Mly113I	GGCGCC	1 cut(s)	242
MlyI	GAGTC	2 cut(s)	102, 112
MseI	TTAA	1 cut(s)	27
MspI	CCGG	1 cut(s)	407
MspR9I	CCNGG	1 cut(s)	209
MvaI	CCWGG	1 cut(s)	209
MvnI	CGCG	1 cut(s)	239
MwoI	GCNNNNNNNGC	1 cut(s)	223
NarI	GGCGCC	1 cut(s)	242
NdeII	GATC	6 cut(s)	69, 196, 256, 325, 432, 447
NlaIII	CATG	3 cut(s)	236, 320, 332
NlaIV	GGNNCC	3 cut(s)	243, 405, 465
PagI	TCATGA	1 cut(s)	328
PciSI	GCTCTTC	1 cut(s)	207
PcsI	WCGNNNNNNNCGW	4 cut(s)	180, 189, 291, 363
PflFI	GACNNNGTC	1 cut(s)	368
PfoI	TCCNGGA	1 cut(s)	207
PkrI	GCNGC	2 cut(s)	178, 241
PleI	GAGTC	2 cut(s)	102, 111
PluTI	GGCGCC	1 cut(s)	245
PpsI	GAGTC	2 cut(s)	102, 111
PshAI	GACNNNNGTC	1 cut(s)	350
Psp6I	CCWGG	1 cut(s)	207
PspFI	CCCAGC	1 cut(s)	157
PspGI	CCWGG	1 cut(s)	207
PspN4I	GGNNCC	3 cut(s)	243, 405, 465
PspPI	GGNCC	1 cut(s)	229
PsuI	RGATCY	2 cut(s)	196, 256
PsyI	GACNNNGTC	1 cut(s)	368
RsaI	GTAC	2 cut(s)	338, 389
RsaNI	GTAC	2 cut(s)	337, 388
SalI	GTCGAC	3 cut(s)	105, 182, 353
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	27
SatI	GCNGC	2 cut(s)	177, 240
Sau3AI	GATC	6 cut(s)	69, 196, 256, 325, 432, 447
Sau96I	GGNCC	1 cut(s)	229
SchI	GAGTC	2 cut(s)	102, 112
ScrFI	CCNGG	1 cut(s)	209
SetI	ASST	8 cut(s)	163, 206, 284, 369, 414, 420, 430, 461
SfoI	GGCGCC	1 cut(s)	243
SgrDI	CGTCGACG	1 cut(s)	182
Sse9I	AATT	2 cut(s)	266, 302
SsiI	CCGC	4 cut(s)	32, 154, 177, 239
SspDI	GGCGCC	1 cut(s)	241
SspMI	CTAG	1 cut(s)	456
StyD4I	CCNGG	1 cut(s)	207
StyI	CCWWGG	1 cut(s)	467
TaiI	ACGT	1 cut(s)	369
TaqI	TCGA	5 cut(s)	106, 183, 270, 354, 435
TaqII	GACCGA	1 cut(s)	236
TasI	AATT	2 cut(s)	266, 302
TauI	GCSGC	2 cut(s)	179, 242
Tru1I	TTAA	1 cut(s)	27
Tru9I	TTAA	1 cut(s)	27
TscAI	CASTG	1 cut(s)	132
TspGWI	ACGGA	2 cut(s)	362, 416
TspRI	CASTG	1 cut(s)	132
Tth111I	GACNNNGTC	1 cut(s)	368
XapI	RAATTY	2 cut(s)	266, 302
XmiI	GTMKAC	3 cut(s)	106, 183, 354
XspI	CTAG	1 cut(s)	456
ZraI	GACGTC	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.