Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000980.1

Orthogroup ID

OG0012427

Physical Location & Seq

Genomic Coordinates Reverse (-)

11369 .. 11926

Gene Structure 558 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000980.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggcctcaacgacccggcccttcgtcttcgccctcgcattcctcactatttacaccgccctgccactctccctctctcagaccaccgaagccccggcgccggccgccgatttgtgcaacggcgtcttcatatcctactcctacaccgacggcaagcagatcggccccaccgttccggcgccgcagccctaccggttcgagtccgtgctgactgtgctcaacaacggcgaggaggacctcaagtcgtggaaggtgttcgtcgggtttcagcacggcgagtacttggtctctgctgccaatgctgtgctcgccgacgggagtgcgtatcccggaagtgtggagaacggcaccgttttcgccgggttcccgcagaccgatctgaagacggcgatcaagacggcgggcgacttgacgcagatgcgggtgcaggtgaagttgatcgggactcagttcggcgtggcgccgccgaatgttccgatgccggccaatatctctttggctaatgatggctttcgttgccccaaggcctcattgcaaggtcagctcctctctatttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0031224 GO:0031225 GO:0031226 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048364 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0055044 GO:0060560 GO:0071695 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

185

Amino Acids

19.61

Weight (kDa)

5.28

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16120
fragaria_vesca	FvH4_4g19240
malus_domestica	MD13G1159600.v1.1 MD16G1159300.v1.1
prunus_persica	Prupe.1G126300_v2.0.a1
pyrus_communis	pycom13g13600 pycom16g13430
rosa_chinensis	RchiOBHm_Chr4g0424221
rosa_laevigata	RLG00000007495
rosa_multiflora	Rmu_sc0000980.1_g000001 Rmu_sc0002260.1_g000034 Rmu_sc0019001.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366170
rosa_rugosa	Rorug04G0194400
rosa_samantha	Rh4AG251800 Rh4BG257100 Rh4CG267700 Rh4DG251500
rosa_wichuraiana	Rw4G021710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	418
Acc36I	ACCTGC	1 cut(s)	418
AccB1I	GGYRCC	4 cut(s)	97, 178, 347, 460
AciI	CCGC	7 cut(s)	57, 105, 182, 368, 401, 421, 464
AcoI	YGGCCR	2 cut(s)	102, 483
AcuI	CTGAAG	1 cut(s)	401
AcyI	GRCGYC	4 cut(s)	98, 123, 179, 461
AfaI	GTAC	1 cut(s)	281
AfiI	CCNNNNNNNGG	1 cut(s)	100
AgeI	ACCGGT	1 cut(s)	192
AhdI	GACNNNNNGTC	1 cut(s)	241
AluBI	AGCT	1 cut(s)	544
AluI	AGCT	1 cut(s)	544
Alw21I	GWGCWC	2 cut(s)	219, 309
Alw26I	GTCTC	1 cut(s)	292
AoxI	GGCC	6 cut(s)	3, 17, 102, 163, 483, 525
ApeKI	GCWGC	2 cut(s)	184, 293
AsiGI	ACCGGT	1 cut(s)	192
Asp700I	GAANNNNTTC	1 cut(s)	254
AspLEI	GCGC	3 cut(s)	100, 181, 463
AspS9I	GGNCC	3 cut(s)	18, 164, 235
AsuC2I	CCSGG	4 cut(s)	16, 95, 330, 361
AsuHPI	GGTGA	1 cut(s)	442
AvaII	GGWCC	1 cut(s)	235
BanI	GGYRCC	4 cut(s)	97, 178, 347, 460
BbsI	GAAGAC	3 cut(s)	19, 118, 389
Bbv12I	GWGCWC	2 cut(s)	219, 309
BbvI	GCAGC	2 cut(s)	196, 280
BccI	CCATC	1 cut(s)	500
BceAI	ACGGC	7 cut(s)	136, 166, 241, 289, 361, 402, 414
BcgI	CGANNNNNNTGC	6 cut(s)	142, 176, 302, 336, 337, 371
BciVI	GTATCC	1 cut(s)	336
BcnI	CCSGG	4 cut(s)	16, 95, 330, 361
BcoDI	GTCTC	1 cut(s)	292
BfoI	RGCGCY	3 cut(s)	101, 182, 464
BfuAI	ACCTGC	1 cut(s)	418
BfuI	GTATCC	1 cut(s)	336
BisI	GCNGC	5 cut(s)	105, 182, 185, 294, 464
BlsI	GCNGC	5 cut(s)	106, 183, 186, 295, 465
BmcAI	AGTACT	1 cut(s)	281
Bme1390I	CCNGG	4 cut(s)	16, 95, 330, 361
Bme18I	GGWCC	1 cut(s)	235
BmeRI	GACNNNNNGTC	1 cut(s)	241
BmgT120I	GGNCC	3 cut(s)	18, 164, 235
BmiI	GGNNCC	6 cut(s)	99, 166, 180, 349, 365, 462
BmrFI	CCNGG	4 cut(s)	16, 95, 330, 361
BmsI	GCATC	2 cut(s)	408, 468
BpiI	GAAGAC	3 cut(s)	19, 118, 389
BpuEI	CTTGAG	1 cut(s)	224
BpuMI	CCSGG	4 cut(s)	16, 95, 330, 361
BsaHI	GRCGYC	4 cut(s)	98, 123, 179, 461
BsaI	GGTCTC	1 cut(s)	292
BsaJI	CCNNGG	2 cut(s)	93, 522
BsaWI	WCCGGW	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	100
Bse118I	RCCGGY	3 cut(s)	100, 192, 481
Bse3DI	GCAATG	1 cut(s)	530
BseDI	CCNNGG	2 cut(s)	93, 522
BseLI	CCNNNNNNNGG	1 cut(s)	100
BseMI	GCAATG	1 cut(s)	530
BseMII	CTCAG	2 cut(s)	92, 461
BseRI	GAGGAG	2 cut(s)	245, 536
BseX3I	CGGCCG	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	196, 280
BsgI	GTGCAG	1 cut(s)	446
Bsh1285I	CGRYCG	1 cut(s)	105
BshFI	GGCC	6 cut(s)	5, 19, 104, 165, 485, 527
BshNI	GGYRCC	4 cut(s)	97, 178, 347, 460
BshTI	ACCGGT	1 cut(s)	192
BsiEI	CGRYCG	1 cut(s)	105
BsiHKAI	GWGCWC	2 cut(s)	219, 309
BsiSI	CCGG	8 cut(s)	16, 95, 101, 176, 193, 330, 360, 482
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	100
BsmAI	GTCTC	1 cut(s)	292
BsmFI	GGGAC	1 cut(s)	457
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	6 cut(s)	5, 19, 104, 165, 485, 527
Bso31I	GGTCTC	1 cut(s)	292
Bsp1286I	GDGCHC	2 cut(s)	219, 309
Bsp143I	GATC	4 cut(s)	159, 376, 390, 438
BspACI	CCGC	7 cut(s)	57, 105, 182, 368, 401, 421, 464
BspANI	GGCC	6 cut(s)	5, 19, 104, 165, 485, 527
BspCNI	CTCAG	2 cut(s)	91, 460
BspLI	GGNNCC	6 cut(s)	99, 166, 180, 349, 365, 462
BspMI	ACCTGC	1 cut(s)	418
BspT107I	GGYRCC	4 cut(s)	97, 178, 347, 460
BspTNI	GGTCTC	1 cut(s)	292
BsrDI	GCAATG	1 cut(s)	530
BsrFI	RCCGGY	3 cut(s)	100, 192, 481
BssAI	RCCGGY	3 cut(s)	100, 192, 481
BssECI	CCNNGG	2 cut(s)	93, 522
BssMI	GATC	4 cut(s)	159, 376, 390, 438
BssNI	GRCGYC	4 cut(s)	98, 123, 179, 461
BssT1I	CCWWGG	1 cut(s)	522
Bst4CI	ACNGT	3 cut(s)	172, 214, 352
BstACI	GRCGYC	4 cut(s)	98, 123, 179, 461
BstC8I	GCNNGC	5 cut(s)	102, 155, 309, 403, 483
BstDEI	CTNAG	2 cut(s)	78, 447
BstH2I	RGCGCY	3 cut(s)	101, 182, 464
BstHHI	GCGC	3 cut(s)	100, 181, 463
BstKTI	GATC	4 cut(s)	162, 379, 393, 441
BstMAI	GTCTC	1 cut(s)	292
BstMBI	GATC	4 cut(s)	159, 376, 390, 438
BstMCI	CGRYCG	1 cut(s)	105
BstMWI	GCNNNNNNNGC	6 cut(s)	104, 214, 299, 308, 516, 541
BstSCI	CCNGG	4 cut(s)	14, 93, 328, 359
BstV1I	GCAGC	2 cut(s)	196, 280
BstV2I	GAAGAC	3 cut(s)	19, 118, 389
BstZI	CGGCCG	1 cut(s)	102
BsuI	GTATCC	1 cut(s)	336
BsuRI	GGCC	6 cut(s)	5, 19, 104, 165, 485, 527
BveI	ACCTGC	1 cut(s)	418
Cac8I	GCNNGC	5 cut(s)	102, 155, 309, 403, 483
CfoI	GCGC	3 cut(s)	100, 181, 463
Cfr10I	RCCGGY	3 cut(s)	100, 192, 481
Cfr13I	GGNCC	3 cut(s)	18, 164, 235
CseI	GACGC	2 cut(s)	112, 421
Csp6I	GTAC	1 cut(s)	280
CspAI	ACCGGT	1 cut(s)	192
CviQI	GTAC	1 cut(s)	280
DdeI	CTNAG	2 cut(s)	78, 447
DinI	GGCGCC	3 cut(s)	99, 180, 462
DpnI	GATC	4 cut(s)	161, 378, 392, 440
DpnII	GATC	4 cut(s)	159, 376, 390, 438
DriI	GACNNNNNGTC	1 cut(s)	241
EaeI	YGGCCR	2 cut(s)	102, 483
EagI	CGGCCG	1 cut(s)	102
Eam1105I	GACNNNNNGTC	1 cut(s)	241
EclXI	CGGCCG	1 cut(s)	102
Eco130I	CCWWGG	1 cut(s)	522
Eco147I	AGGCCT	1 cut(s)	527
Eco31I	GGTCTC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	235
Eco52I	CGGCCG	1 cut(s)	102
Eco57I	CTGAAG	1 cut(s)	401
EcoO109I	RGGNCCY	1 cut(s)	235
EcoT14I	CCWWGG	1 cut(s)	522
EgeI	GGCGCC	3 cut(s)	99, 180, 462
EheI	GGCGCC	3 cut(s)	99, 180, 462
ErhI	CCWWGG	1 cut(s)	522
FaiI	YATR	1 cut(s)	131
FaqI	GGGAC	1 cut(s)	457
FauI	CCCGC	3 cut(s)	375, 394, 414
Fnu4HI	GCNGC	5 cut(s)	105, 182, 185, 294, 464
Fsp4HI	GCNGC	5 cut(s)	105, 182, 185, 294, 464
GlaI	GCGC	3 cut(s)	99, 180, 462
GluI	GCNGC	5 cut(s)	105, 182, 185, 294, 464
HaeII	RGCGCY	3 cut(s)	101, 182, 464
HaeIII	GGCC	6 cut(s)	5, 19, 104, 165, 485, 527
HapII	CCGG	8 cut(s)	16, 95, 101, 176, 193, 330, 360, 482
HgaI	GACGC	2 cut(s)	112, 421
HhaI	GCGC	3 cut(s)	100, 181, 463
Hin1I	GRCGYC	4 cut(s)	98, 123, 179, 461
Hin6I	GCGC	3 cut(s)	98, 179, 461
HinP1I	GCGC	3 cut(s)	98, 179, 461
HinfI	GANTC	2 cut(s)	200, 445
HpaII	CCGG	8 cut(s)	16, 95, 101, 176, 193, 330, 360, 482
HphI	GGTGA	1 cut(s)	442
Hpy188I	TCNGA	3 cut(s)	81, 381, 477
Hpy188III	TCNNGA	2 cut(s)	394, 442
Hpy99I	CGWCG	3 cut(s)	152, 263, 317
HpyAV	CCTTC	2 cut(s)	31, 244
HpyCH4III	ACNGT	3 cut(s)	172, 214, 352
HpyCH4V	TGCA	3 cut(s)	117, 427, 535
HpyF10VI	GCNNNNNNNGC	6 cut(s)	104, 214, 299, 308, 516, 541
HpyF3I	CTNAG	2 cut(s)	78, 447
Hsp92I	GRCGYC	4 cut(s)	98, 123, 179, 461
HspAI	GCGC	3 cut(s)	98, 179, 461
KasI	GGCGCC	3 cut(s)	97, 178, 460
KroI	GCCGGC	2 cut(s)	100, 481
KroNI	GCCGGC	2 cut(s)	102, 483
Kzo9I	GATC	4 cut(s)	159, 376, 390, 438
LmnI	GCTCC	1 cut(s)	549
Lsp1109I	GCAGC	2 cut(s)	196, 280
LweI	GCATC	2 cut(s)	408, 468
MalI	GATC	4 cut(s)	161, 378, 392, 440
MboI	GATC	4 cut(s)	159, 376, 390, 438
MboII	GAAGA	3 cut(s)	19, 118, 394
MhlI	GDGCHC	2 cut(s)	219, 309
Mly113I	GGCGCC	3 cut(s)	98, 179, 461
MlyI	GAGTC	2 cut(s)	209, 439
MnlI	CCTC	9 cut(s)	16, 44, 53, 83, 223, 226, 248, 538, 557
MroNI	GCCGGC	2 cut(s)	100, 481
MroXI	GAANNNNTTC	1 cut(s)	254
MspI	CCGG	8 cut(s)	16, 95, 101, 176, 193, 330, 360, 482
MspR9I	CCNGG	4 cut(s)	16, 95, 330, 361
Mva1269I	GAATGC	1 cut(s)	38
MwoI	GCNNNNNNNGC	6 cut(s)	104, 214, 299, 308, 516, 541
NaeI	GCCGGC	2 cut(s)	102, 483
NarI	GGCGCC	3 cut(s)	98, 179, 461
NciI	CCSGG	4 cut(s)	16, 95, 330, 361
NdeII	GATC	4 cut(s)	159, 376, 390, 438
NgoMIV	GCCGGC	2 cut(s)	100, 481
NlaIV	GGNNCC	6 cut(s)	99, 166, 180, 349, 365, 462
PaqCI	CACCTGC	1 cut(s)	418
PceI	AGGCCT	1 cut(s)	527
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	1 cut(s)	38
PdiI	GCCGGC	2 cut(s)	102, 483
PdmI	GAANNNNTTC	1 cut(s)	254
PfoI	TCCNGGA	1 cut(s)	328
PinAI	ACCGGT	1 cut(s)	192
PkrI	GCNGC	5 cut(s)	106, 183, 186, 295, 465
PleI	GAGTC	2 cut(s)	208, 439
PluTI	GGCGCC	3 cut(s)	101, 182, 464
PpsI	GAGTC	2 cut(s)	208, 439
PpuMI	RGGWCCY	1 cut(s)	235
Psp5II	RGGWCCY	1 cut(s)	235
PspN4I	GGNNCC	6 cut(s)	99, 166, 180, 349, 365, 462
PspPI	GGNCC	3 cut(s)	18, 164, 235
PspPPI	RGGWCCY	1 cut(s)	235
RsaI	GTAC	1 cut(s)	281
RsaNI	GTAC	1 cut(s)	280
SatI	GCNGC	5 cut(s)	105, 182, 185, 294, 464
Sau3AI	GATC	4 cut(s)	159, 376, 390, 438
Sau96I	GGNCC	3 cut(s)	18, 164, 235
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	2 cut(s)	209, 439
ScrFI	CCNGG	4 cut(s)	16, 95, 330, 361
SduI	GDGCHC	2 cut(s)	219, 309
SetI	ASST	5 cut(s)	240, 255, 432, 541, 546
SfaNI	GCATC	2 cut(s)	408, 468
SfoI	GGCGCC	3 cut(s)	99, 180, 462
SinI	GGWCC	1 cut(s)	235
SmlI	CTYRAG	1 cut(s)	239
SmoI	CTYRAG	1 cut(s)	239
SseBI	AGGCCT	1 cut(s)	527
SsiI	CCGC	7 cut(s)	57, 105, 182, 368, 401, 421, 464
SspDI	GGCGCC	3 cut(s)	97, 178, 460
StuI	AGGCCT	1 cut(s)	527
StyD4I	CCNGG	4 cut(s)	14, 93, 328, 359
StyI	CCWWGG	1 cut(s)	522
TaaI	ACNGT	3 cut(s)	172, 214, 352
TaqI	TCGA	1 cut(s)	198
TaqII	GACCGA	1 cut(s)	389
TatI	WGTACW	1 cut(s)	279
TauI	GCSGC	3 cut(s)	107, 184, 466
TseI	GCWGC	2 cut(s)	184, 293
TspDTI	ATGAA	1 cut(s)	118
TspGWI	ACGGA	1 cut(s)	193
VpaK11BI	GGWCC	1 cut(s)	235
XcmI	CCANNNNNNNNNTGG	1 cut(s)	493
XmnI	GAANNNNTTC	1 cut(s)	254
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.