Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012427

Physical Location & Seq

Genomic Coordinates Forward (+)

33847864 .. 33857197

Gene Structure 9334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0194400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2847 bp

ATGCTAAAGGGAAGAGAAAGCTTGAGCCGATTGGTGGGCAAACGCAGGCGCTTCCTTCCCAATCGTCATTCACTCCTCTCCGCCCCTACCACCACCCAGAGCTTATTGAATCTGGATATCGATCCAAATGGAAAACTCGTGTCCCTGGAAGGCTCTTCAAATCAAGACGAGCAAGAAAACACTGTGGTGGGCTCTGTTACTTGCCCTGTTTGCAGCGTCAAACTCAGTGCCCAAAACAACACCATCAATTCTCATCTGGATGAGTGTCTATCTAGAGGAACCAAACGAAAGCTAACCCAGCGCACACTTCTAGAGCTGAACTTCTGCCCAGTGTCGAAAATTCAAAATTTTTCCTGTGACTCTAAAGAGTTTGGAAATGATTTATTTCCTGCAGCTCATGATGAGAGTCATGTACAAGCTGCGTCGTGGGGGTTGTCTAACTTAAGGGCTGTTGACGAAAGTCAAAATCAGGTTGACAGTCCATCCAGAAACCCAATCAATAAGGACAAGATCAGTGAGGTGCCAGATTTTGATGTGACCATCACTCAGGACGACATATATGGGGTGATTCTTGAAACTATTATTGTTGGCCGCAGGTTTGGTGATGAAACTGATTTATATCTTGGTGCAAGCATTTATCTCTCAAGAGATCCTGATAATGTTAAGGATCCTAATGCTATCAAGGTTGTTTATTCAGATTCAGGATGCCTTAAAATGCTTGGTTTTCTCCCTCGCAAGCTAGCTGAGTATTTGTCTCCTCTGATAGACCAGTATCGTTTAAATTTTGAGGGATGCGTTACCTCTGTTCCCAAGCGTTCTATTGATGTTGTCCCAATACAGATAGTGTGTCACAAGACCAGTGATAATAAGGACTTTAATGATGACAAGGTTTTCAAATGTTTATGGAGAAATGCTCAGCAAGTAATTGAATCTACAAAGTCCTGTCCGCCCAGTGCAATAAAATATCAGGATAACTTTTGTGTTTTCATACGTGAGGTTTTGAGAAACAGTTCTCACCTCTTGACAGATGATGAAAAGAATTTCATCGAGTCGTTTACTTCAATGTCAGATGATAGTCAGAGGCTATTTGTTCGGCTTTATACACGGAAAGGCCCATGGTTTCGGCTGTCTGCTATTTCATACCCAGAAGTACTGGATCCCCAACAAGCAGTGAAAGAGCTATCTGAGACAGGGTATGGATCTTGCTTTGAAATTACAAATAAACTATCTGATGATGATATTAAGGAGATTTTGGATTTGCTCACTGTATCTGATCTACGTGAAATCTTGTGCATCCTTAAGCAGAGTTGCAATCGTGGCCTAAAAAAGATGGATCTCATTGCATCTCTTATATCTTCTTACAATGAAGATTTGTGCCCATTACTACCTAGTATGGTTTTGCATAGAACAGGATCCTGTGTTAGGATATCTTCAAATGCGGAGTCCCTTATCTGGCGTGCTGAGAGGCTTTTCTTCCTGAATGGTGAACAGGATCTCTCAACATTTCTACTGGTGGATTTGGGAATAATCAAGTATCCAACTTACAAGTGCATAGTCTCACAACAAATTTTCTCAGCTCGAGATGACTTGCTTGGCTATGAAGAGGCTATTGAAGTGGCACAAATAGTTGATGAAGCTCTTGATGGAAGCAACACTGGATTGGTCTTAAAGTGCATAAAAATAGCTGATTCCCATTTATCAAATCCAGTTCAATCCTTGACCTCTGAATCAATGGCTCCATTCCTTTCCCACTTTTCAGCAACATTTGTCTACTCAAAAGTGGTTTTACTAGGAATTTCTTTTCTTGAGCGTGAGCATAGGTACAATGAAGCTATCTATTTACTGAAAAGGCTGCTGAATTGTTTTGCTCGTGACGGTAGAAGAGGATACTGGACACTAAGGTTATCAATTGATTTGGAGCACATGTGCTATCTGAATGAGAGCCTTTTGGTTGCTGAAAATGGGTTACTAGATGAATGGGTGCGTGCTGGTTCAAGAGTGGCACTTCAAAGGAGAGTCCTTCGCTTGGGAAAACCACCGAGGCGATGGAAAACTCCTAGTTTTGCAGAGTCTGTCAAGAGGAAGATCATGGAGGTCAATGTTCAAGGGAGACCTCTAAATTGTGCAATAGGCACGAAGAGCAGGTTTTATGGAGAAGATGGGGAGCAATGTGGTGTAGAGCAGCTAGCTCTGCAGTATTATGCCGAGGAAGGTGGATGGCAGGGTGTTCATACAGAGAGTGGCATTTGGTTGACTATTTTTGGACTTCTTATGTGGGATATTATATTTTCCAATGTACCAAATGTCTTCCGCACCAGATTTCAGACTGCTCCCTTGGATTTAGAGACTGAGAGCTTTTATTTAGTGAGAAAGAACCAAATCGAGTCTCACCTACAGAAAATTCATGATGGTATGGCTGAGGAGATTCTCATCACTTCATGGGAGTTACATGAGGGAACGGCGTGTAGAGGAGTTAACTGGGGGCGACATTCCCTCTCTGAGCTTCGGGCAGCTGTTACATGCATTGGTGGCCCTTGTGTGGCTGCATTTTGTCGACATCTTGCACAAGATTATCGTAGTTGGTCAAGTGGAATGCCAGATTTACTTCTGTGGCGCTTTCATGGGAAATACAGAGGTGAAGCAAAGCTTGTTGAAGTTAAAGGCCCCAGGGATAGACTCTCTGAACAGCAGCGAGCATGGCTATTGCTTTTAATGGATTGTGGATTCAATGCCGAGGTCTGTAAGCAACTGGATCTGCTCTTAAATGAGTTTACCCTTCAAACTCCAGAATTATTATCGGATAATTCTAGGATTGGCAAGTACTTGACTGCCAAGCTTTCACCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0031224 GO:0031225 GO:0031226 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048364 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0055044 GO:0060560 GO:0071695 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

948

Amino Acids

107.36

Weight (kDa)

6.0

Isoelectric Point (pI)

41.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HIRAN	PF08797	195 - 272	9.7e-13	HIRAN domain
FAN1_HTH	PF21315	322 - 399	1.9e-17	FAN1, HTH domain
FAN1_TPR	PF21170	529 - 676	9.5e-14	Fanconi-associated nuclease 1, TPR domain
VRR_NUC	PF08774	803 - 915	3.6e-35	VRR-NUC domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16120
fragaria_vesca	FvH4_4g19240
malus_domestica	MD13G1159600.v1.1 MD16G1159300.v1.1
prunus_persica	Prupe.1G126300_v2.0.a1
pyrus_communis	pycom13g13600 pycom16g13430
rosa_chinensis	RchiOBHm_Chr4g0424221
rosa_laevigata	RLG00000007495
rosa_multiflora	Rmu_sc0000980.1_g000001 Rmu_sc0002260.1_g000034 Rmu_sc0019001.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366170
rosa_rugosa	Rorug04G0194400
rosa_samantha	Rh4AG251800 Rh4BG257100 Rh4CG267700 Rh4DG251500
rosa_wichuraiana	Rw4G021710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	585, 2133
AccB1I	GGYRCC	1 cut(s)	520
AccI	GTMKAC	2 cut(s)	1770, 2554
AciI	CCGC	5 cut(s)	81, 592, 947, 1439, 2311
AcoI	YGGCCR	1 cut(s)	589
AcsI	RAATTY	7 cut(s)	339, 346, 781, 1039, 1566, 1794, 2400
AfaI	GTAC	5 cut(s)	414, 1152, 1823, 2298, 2822
AfiI	CCNNNNNNNGG	5 cut(s)	34, 1422, 1452, 2026, 2539
AflII	CTTAAG	2 cut(s)	442, 1298
AflIII	ACRYGT	1 cut(s)	1923
AjnI	CCWGG	2 cut(s)	144, 2666
AleI	CACNNNNGTG	1 cut(s)	185
Alw21I	GWGCWC	1 cut(s)	1923
Alw26I	GTCTC	6 cut(s)	759, 1181, 1561, 2104, 2339, 2391
AlwNI	CAGNNNCTG	1 cut(s)	2072
Ama87I	CYCGRG	1 cut(s)	1578
AoxI	GGCC	5 cut(s)	589, 1111, 1318, 2530, 2662
ApeKI	GCWGC	8 cut(s)	213, 392, 419, 1852, 2182, 2510, 2543, 2689
ApoI	RAATTY	7 cut(s)	339, 346, 781, 1039, 1566, 1794, 2400
ArsI	GACNNNNNNTTYG	2 cut(s)	1427, 1459
Asp700I	GAANNNNTTC	1 cut(s)	1009
AspLEI	GCGC	3 cut(s)	51, 303, 2616
AspS9I	GGNCC	3 cut(s)	1112, 2531, 2663
AsuHPI	GGTGA	7 cut(s)	577, 614, 1007, 1496, 2381, 2648, 2832
AsuNHI	GCTAGC	2 cut(s)	739, 2185
AvaI	CYCGRG	1 cut(s)	1578
BaeGI	GKGCMC	2 cut(s)	232, 1379
BamHI	GGATCC	3 cut(s)	667, 1156, 1412
BanI	GGYRCC	1 cut(s)	520
BanII	GRGCYC	1 cut(s)	194
BauI	CACGAG	2 cut(s)	137, 1869
BbsI	GAAGAC	1 cut(s)	2299
Bbv12I	GWGCWC	1 cut(s)	1923
BbvCI	CCTCAGC	1 cut(s)	2418
BbvI	GCAGC	8 cut(s)	225, 404, 406, 1839, 2194, 2522, 2530, 2701
BccI	CCATC	9 cut(s)	251, 490, 548, 1324, 1637, 2040, 2153, 2211, 2402
BceAI	ACGGC	1 cut(s)	2475
BciT130I	CCWGG	2 cut(s)	146, 2668
BciVI	GTATCC	2 cut(s)	1545, 1880
BcoDI	GTCTC	6 cut(s)	759, 1181, 1561, 2104, 2339, 2391
BfaI	CTAG	9 cut(s)	273, 311, 740, 1389, 1790, 1970, 2058, 2186, 2808
BfmI	CTRYAG	3 cut(s)	390, 2192, 2393
BfoI	RGCGCY	2 cut(s)	52, 2617
BfrI	CTTAAG	2 cut(s)	442, 1298
BfuAI	ACCTGC	2 cut(s)	585, 2133
BfuI	GTATCC	2 cut(s)	1545, 1880
BisI	GCNGC	9 cut(s)	214, 393, 420, 592, 1853, 2183, 2511, 2544, 2690
BlpI	GCTNAGC	1 cut(s)	915
BlsI	GCNGC	9 cut(s)	215, 394, 421, 593, 1854, 2184, 2512, 2545, 2691
BmcAI	AGTACT	2 cut(s)	1152, 2822
Bme1390I	CCNGG	2 cut(s)	146, 2668
BmeT110I	CYCGRG	1 cut(s)	1578
BmgT120I	GGNCC	3 cut(s)	1112, 2531, 2663
BmiI	GGNNCC	7 cut(s)	280, 522, 669, 1158, 1414, 1737, 2665
BmrFI	CCNGG	2 cut(s)	146, 2668
BmrI	ACTGGG	3 cut(s)	323, 945, 2488
BmsI	GCATC	4 cut(s)	695, 782, 1302, 1352
BmtI	GCTAGC	2 cut(s)	743, 2189
BmuI	ACTGGG	3 cut(s)	323, 945, 2488
BoxI	GACNNNNGTC	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	2299
BplI	GAGNNNNNCTC	2 cut(s)	898, 930
BpmI	CTGGAG	1 cut(s)	2769
Bpu10I	CCTNAGC	1 cut(s)	2418
Bpu1102I	GCTNAGC	1 cut(s)	915
BpuEI	CTTGAG	3 cut(s)	43, 628, 1826
Bsa29I	ATCGAT	1 cut(s)	120
BsaAI	YACGTR	2 cut(s)	992, 1280
BsaBI	GATNNNNATC	3 cut(s)	120, 618, 2429
BsaI	GGTCTC	1 cut(s)	2104
BsaJI	CCNNGG	8 cut(s)	144, 1115, 2039, 2205, 2334, 2666, 2667, 2733
BsaXI	ACNNNNNCTCC	2 cut(s)	1910, 1940
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 1422, 1452, 2026, 2539
Bse3DI	GCAATG	2 cut(s)	1338, 2174
Bse8I	GATNNNNATC	3 cut(s)	120, 618, 2429
BseBI	CCWGG	2 cut(s)	146, 2668
BseCI	ATCGAT	1 cut(s)	120
BseDI	CCNNGG	8 cut(s)	144, 1115, 2039, 2205, 2334, 2666, 2667, 2733
BseGI	GGATG	6 cut(s)	265, 482, 710, 797, 1293, 2222
BseJI	GATNNNNATC	3 cut(s)	120, 618, 2429
BseLI	CCNNNNNNNGG	5 cut(s)	34, 1422, 1452, 2026, 2539
BseMI	GCAATG	2 cut(s)	1338, 2174
BseRI	GAGGAG	4 cut(s)	65, 747, 2435, 2484
BseSI	GKGCMC	2 cut(s)	232, 1379
BseXI	GCAGC	8 cut(s)	225, 404, 406, 1839, 2194, 2522, 2530, 2701
BseYI	CCCAGC	1 cut(s)	297
BshFI	GGCC	5 cut(s)	591, 1113, 1320, 2532, 2664
BshNI	GGYRCC	1 cut(s)	520
BshVI	ATCGAT	1 cut(s)	120
BsiHKAI	GWGCWC	1 cut(s)	1923
BsiHKCI	CYCGRG	1 cut(s)	1578
BslFI	GGGAC	3 cut(s)	127, 815, 1429
BslI	CCNNNNNNNGG	5 cut(s)	34, 1422, 1452, 2026, 2539
BsmAI	GTCTC	6 cut(s)	759, 1181, 1561, 2104, 2339, 2391
BsmFI	GGGAC	3 cut(s)	127, 815, 1429
BsmI	GAATGC	1 cut(s)	2598
BsnI	GGCC	5 cut(s)	591, 1113, 1320, 2532, 2664
Bso31I	GGTCTC	1 cut(s)	2104
BsoBI	CYCGRG	1 cut(s)	1578
Bsp1286I	GDGCHC	4 cut(s)	194, 232, 1379, 1923
Bsp1407I	TGTACA	1 cut(s)	412
Bsp1720I	GCTNAGC	1 cut(s)	915
Bsp19I	CCATGG	1 cut(s)	1115
BspACI	CCGC	5 cut(s)	81, 592, 947, 1439, 2311
BspANI	GGCC	5 cut(s)	591, 1113, 1320, 2532, 2664
BspDI	ATCGAT	1 cut(s)	120
BspHI	TCATGA	2 cut(s)	397, 2404
BspLI	GGNNCC	7 cut(s)	280, 522, 669, 1158, 1414, 1737, 2665
BspMAI	CTGCAG	2 cut(s)	394, 2196
BspMI	ACCTGC	2 cut(s)	585, 2133
BspOI	GCTAGC	2 cut(s)	743, 2189
BspQI	GCTCTTC	2 cut(s)	160, 2132
BspT107I	GGYRCC	1 cut(s)	520
BspTI	CTTAAG	2 cut(s)	442, 1298
BspTNI	GGTCTC	1 cut(s)	2104
BsrDI	GCAATG	2 cut(s)	1338, 2174
BsrGI	TGTACA	1 cut(s)	412
BssECI	CCNNGG	8 cut(s)	144, 1115, 2039, 2205, 2334, 2666, 2667, 2733
BssSI	CACGAG	2 cut(s)	137, 1869
BssT1I	CCWWGG	2 cut(s)	1115, 2334
Bst2BI	CACGAG	2 cut(s)	137, 1869
Bst2UI	CCWGG	2 cut(s)	146, 2668
Bst4CI	ACNGT	5 cut(s)	184, 479, 1010, 1267, 1877
Bst6I	CTCTTC	5 cut(s)	7, 160, 1596, 1876, 2132
BstAFI	CTTAAG	2 cut(s)	442, 1298
BstAUI	TGTACA	1 cut(s)	412
BstBAI	YACGTR	2 cut(s)	992, 1280
BstC8I	GCNNGC	8 cut(s)	47, 631, 737, 741, 1458, 1986, 2187, 2694
BstDSI	CCRYGG	1 cut(s)	1115
BstENI	CCTNNNNNAGG	1 cut(s)	1420
BstF5I	GGATG	6 cut(s)	265, 482, 710, 797, 1293, 2222
BstH2I	RGCGCY	2 cut(s)	52, 2617
BstHHI	GCGC	3 cut(s)	51, 303, 2616
BstMAI	GTCTC	6 cut(s)	759, 1181, 1561, 2104, 2339, 2391
BstMWI	GCNNNNNNNGC	7 cut(s)	210, 298, 1317, 2139, 2191, 2529, 2698
BstNI	CCWGG	2 cut(s)	146, 2668
BstNSI	RCATGY	2 cut(s)	1927, 2523
BstPAI	GACNNNNGTC	1 cut(s)	459
BstSCI	CCNGG	2 cut(s)	144, 2666
BstSFI	CTRYAG	3 cut(s)	390, 2192, 2393
BstSLI	GKGCMC	2 cut(s)	232, 1379
BstV1I	GCAGC	8 cut(s)	225, 404, 406, 1839, 2194, 2522, 2530, 2701
BstV2I	GAAGAC	1 cut(s)	2299
BstX2I	RGATCY	8 cut(s)	649, 667, 1156, 1199, 1333, 1412, 1492, 2752
BstYI	RGATCY	8 cut(s)	649, 667, 1156, 1199, 1333, 1412, 1492, 2752
Bsu15I	ATCGAT	1 cut(s)	120
BsuI	GTATCC	2 cut(s)	1545, 1880
BsuRI	GGCC	5 cut(s)	591, 1113, 1320, 2532, 2664
BsuTUI	ATCGAT	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	1115
BtgZI	GCGATG	1 cut(s)	2059
BtsCI	GGATG	6 cut(s)	265, 482, 710, 797, 1293, 2222
BtsI	GCAGTG	1 cut(s)	1176
BtsIMutI	CAGTG	9 cut(s)	180, 232, 336, 520, 865, 958, 1176, 1263, 1653
BveI	ACCTGC	2 cut(s)	585, 2133
Cac8I	GCNNGC	8 cut(s)	47, 631, 737, 741, 1458, 1986, 2187, 2694
CaiI	CAGNNNCTG	1 cut(s)	2072
CciI	TCATGA	2 cut(s)	397, 2404
CfoI	GCGC	3 cut(s)	51, 303, 2616
Cfr13I	GGNCC	3 cut(s)	1112, 2531, 2663
ClaI	ATCGAT	1 cut(s)	120
CseI	GACGC	2 cut(s)	205, 411
Csp6I	GTAC	5 cut(s)	413, 1151, 1822, 2297, 2821
CviQI	GTAC	5 cut(s)	413, 1151, 1822, 2297, 2821
DraI	TTTAAA	1 cut(s)	780
EaeI	YGGCCR	1 cut(s)	589
Eam1104I	CTCTTC	5 cut(s)	7, 160, 1596, 1876, 2132
EarI	CTCTTC	5 cut(s)	7, 160, 1596, 1876, 2132
EciI	GGCGGA	2 cut(s)	70, 936
Eco130I	CCWWGG	2 cut(s)	1115, 2334
Eco24I	GRGCYC	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	2104
Eco32I	GATATC	2 cut(s)	118, 1428
Eco88I	CYCGRG	1 cut(s)	1578
EcoNI	CCTNNNNNAGG	1 cut(s)	1420
EcoO109I	RGGNCCY	1 cut(s)	2663
EcoRII	CCWGG	2 cut(s)	144, 2666
EcoRV	GATATC	2 cut(s)	118, 1428
EcoT14I	CCWWGG	2 cut(s)	1115, 2334
EcoT22I	ATGCAT	1 cut(s)	2525
EcoT38I	GRGCYC	1 cut(s)	194
ErhI	CCWWGG	2 cut(s)	1115, 2334
FalI	AAGNNNNNCTT	2 cut(s)	2631, 2663
FaqI	GGGAC	3 cut(s)	127, 815, 1429
FblI	GTMKAC	2 cut(s)	1770, 2554
Fnu4HI	GCNGC	9 cut(s)	214, 393, 420, 592, 1853, 2183, 2511, 2544, 2690
FokI	GGATG	6 cut(s)	272, 469, 717, 804, 1280, 2229
FriOI	GRGCYC	1 cut(s)	194
Fsp4HI	GCNGC	9 cut(s)	214, 393, 420, 592, 1853, 2183, 2511, 2544, 2690
FspBI	CTAG	9 cut(s)	273, 311, 740, 1389, 1790, 1970, 2058, 2186, 2808
GlaI	GCGC	3 cut(s)	50, 302, 2615
GluI	GCNGC	9 cut(s)	214, 393, 420, 592, 1853, 2183, 2511, 2544, 2690
GsaI	CCCAGC	1 cut(s)	301
GsuI	CTGGAG	1 cut(s)	2769
HaeII	RGCGCY	2 cut(s)	52, 2617
HaeIII	GGCC	5 cut(s)	591, 1113, 1320, 2532, 2664
HgaI	GACGC	2 cut(s)	205, 411
HhaI	GCGC	3 cut(s)	51, 303, 2616
Hin6I	GCGC	3 cut(s)	49, 301, 2614
HinP1I	GCGC	3 cut(s)	49, 301, 2614
HincII	GTYRAC	5 cut(s)	454, 475, 2253, 2476, 2555
HindII	GTYRAC	5 cut(s)	454, 475, 2253, 2476, 2555
HindIII	AAGCTT	3 cut(s)	19, 2645, 2834
HpaI	GTTAAC	1 cut(s)	2476
HphI	GGTGA	7 cut(s)	577, 614, 1007, 1496, 2381, 2648, 2832
Hpy166II	GTNNAC	9 cut(s)	454, 475, 1056, 1487, 1771, 2253, 2476, 2555, 2772
Hpy8I	GTNNAC	9 cut(s)	454, 475, 1056, 1487, 1771, 2253, 2476, 2555, 2772
Hpy99I	CGWCG	1 cut(s)	427
HpyAV	CCTTC	5 cut(s)	65, 143, 2030, 2204, 2786
HpyCH4III	ACNGT	5 cut(s)	184, 479, 1010, 1267, 1877
HpyCH4IV	ACGT	2 cut(s)	991, 1279
HpyF10VI	GCNNNNNNNGC	7 cut(s)	210, 298, 1317, 2139, 2191, 2529, 2698
HpySE526I	ACGT	2 cut(s)	991, 1279
HspAI	GCGC	3 cut(s)	49, 301, 2614
KspAI	GTTAAC	1 cut(s)	2476
LguI	GCTCTTC	2 cut(s)	160, 2132
LmnI	GCTCC	4 cut(s)	1741, 1918, 2164, 2335
Lsp1109I	GCAGC	8 cut(s)	225, 404, 406, 1839, 2194, 2522, 2530, 2701
LweI	GCATC	4 cut(s)	695, 782, 1302, 1352
MaeI	CTAG	9 cut(s)	273, 311, 740, 1389, 1790, 1970, 2058, 2186, 2808
MaeII	ACGT	2 cut(s)	991, 1279
MaeIII	GTNAC	9 cut(s)	196, 356, 535, 796, 848, 1871, 1965, 2445, 2515
MfeI	CAATTG	1 cut(s)	1908
MflI	RGATCY	8 cut(s)	649, 667, 1156, 1199, 1333, 1412, 1492, 2752
MhlI	GDGCHC	4 cut(s)	194, 232, 1379, 1923
MlyI	GAGTC	8 cut(s)	353, 415, 1058, 1451, 2025, 2078, 2393, 2670
MmeI	TCCRAC	1 cut(s)	1562
Mph1103I	ATGCAT	1 cut(s)	2525
MroXI	GAANNNNTTC	1 cut(s)	1009
MslI	CAYNNNNRTG	2 cut(s)	185, 258
MspA1I	CMGCKG	1 cut(s)	2513
MspCI	CTTAAG	2 cut(s)	442, 1298
MspR9I	CCNGG	2 cut(s)	146, 2668
MunI	CAATTG	1 cut(s)	1908
Mva1269I	GAATGC	1 cut(s)	2598
MvaI	CCWGG	2 cut(s)	146, 2668
MwoI	GCNNNNNNNGC	7 cut(s)	210, 298, 1317, 2139, 2191, 2529, 2698
NcoI	CCATGG	1 cut(s)	1115
NheI	GCTAGC	2 cut(s)	739, 2185
NlaIV	GGNNCC	7 cut(s)	280, 522, 669, 1158, 1414, 1737, 2665
NmeAIII	GCCGAG	2 cut(s)	2230, 2758
NmuCI	GTSAC	4 cut(s)	356, 535, 848, 1871
NsiI	ATGCAT	1 cut(s)	2525
NspI	RCATGY	2 cut(s)	1927, 2523
OliI	CACNNNNGTG	1 cut(s)	185
PaeR7I	CTCGAG	1 cut(s)	1578
PagI	TCATGA	2 cut(s)	397, 2404
PasI	CCCWGGG	1 cut(s)	2667
PciI	ACATGT	1 cut(s)	1923
PciSI	GCTCTTC	2 cut(s)	160, 2132
PctI	GAATGC	1 cut(s)	2598
PdmI	GAANNNNTTC	1 cut(s)	1009
PfeI	GAWTC	8 cut(s)	109, 568, 698, 929, 1688, 1727, 2425, 2724
PkrI	GCNGC	9 cut(s)	215, 394, 421, 593, 1854, 2184, 2512, 2545, 2691
PleI	GAGTC	8 cut(s)	353, 414, 1057, 1450, 2024, 2077, 2392, 2670
PpsI	GAGTC	8 cut(s)	353, 414, 1057, 1450, 2024, 2077, 2392, 2670
Ppu21I	YACGTR	2 cut(s)	992, 1280
PscI	ACATGT	1 cut(s)	1923
PshAI	GACNNNNGTC	1 cut(s)	459
Psp6I	CCWGG	2 cut(s)	144, 2666
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	2 cut(s)	144, 2666
PspN4I	GGNNCC	7 cut(s)	280, 522, 669, 1158, 1414, 1737, 2665
PspPI	GGNCC	3 cut(s)	1112, 2531, 2663
PstI	CTGCAG	2 cut(s)	394, 2196
PstNI	CAGNNNCTG	1 cut(s)	2072
PsuI	RGATCY	8 cut(s)	649, 667, 1156, 1199, 1333, 1412, 1492, 2752
PvuII	CAGCTG	1 cut(s)	2513
RsaI	GTAC	5 cut(s)	414, 1152, 1823, 2298, 2822
RsaNI	GTAC	5 cut(s)	413, 1151, 1822, 2297, 2821
RseI	CAYNNNNRTG	2 cut(s)	185, 258
SalI	GTCGAC	1 cut(s)	2553
SapI	GCTCTTC	2 cut(s)	160, 2132
SatI	GCNGC	9 cut(s)	214, 393, 420, 592, 1853, 2183, 2511, 2544, 2690
Sau96I	GGNCC	3 cut(s)	1112, 2531, 2663
ScaI	AGTACT	2 cut(s)	1152, 2822
SchI	GAGTC	8 cut(s)	353, 415, 1058, 1451, 2025, 2078, 2393, 2670
ScrFI	CCNGG	2 cut(s)	146, 2668
SduI	GDGCHC	4 cut(s)	194, 232, 1379, 1923
SfaNI	GCATC	4 cut(s)	695, 782, 1302, 1352
SfcI	CTRYAG	3 cut(s)	390, 2192, 2393
Sfr274I	CTCGAG	1 cut(s)	1578
SlaI	CTCGAG	1 cut(s)	1578
SmiMI	CAYNNNNRTG	2 cut(s)	185, 258
SmlI	CTYRAG	6 cut(s)	22, 442, 643, 1298, 1578, 1805
SmoI	CTYRAG	6 cut(s)	22, 442, 643, 1298, 1578, 1805
SsiI	CCGC	5 cut(s)	81, 592, 947, 1439, 2311
SspMI	CTAG	9 cut(s)	273, 311, 740, 1389, 1790, 1970, 2058, 2186, 2808
StyD4I	CCNGG	2 cut(s)	144, 2666
StyI	CCWWGG	2 cut(s)	1115, 2334
TaaI	ACNGT	5 cut(s)	184, 479, 1010, 1267, 1877
TaiI	ACGT	2 cut(s)	994, 1282
TaqI	TCGA	6 cut(s)	120, 335, 1047, 1579, 2382, 2554
TatI	WGTACW	3 cut(s)	412, 1150, 2820
TauI	GCSGC	1 cut(s)	594
TfiI	GAWTC	8 cut(s)	109, 568, 698, 929, 1688, 1727, 2425, 2724
TscAI	CASTG	9 cut(s)	187, 232, 336, 520, 865, 958, 1176, 1270, 1660
TseFI	GTSAC	4 cut(s)	356, 535, 848, 1871
TseI	GCWGC	8 cut(s)	213, 392, 419, 1852, 2182, 2510, 2543, 2689
Tsp45I	GTSAC	4 cut(s)	356, 535, 848, 1871
TspGWI	ACGGA	1 cut(s)	1120
TspRI	CASTG	9 cut(s)	187, 232, 336, 520, 865, 958, 1176, 1270, 1660
Vha464I	CTTAAG	2 cut(s)	442, 1298
XagI	CCTNNNNNAGG	1 cut(s)	1420
XapI	RAATTY	7 cut(s)	339, 346, 781, 1039, 1566, 1794, 2400
XbaI	TCTAGA	2 cut(s)	272, 310
XceI	RCATGY	2 cut(s)	1927, 2523
XcmI	CCANNNNNNNNNTGG	1 cut(s)	2043
XhoI	CTCGAG	1 cut(s)	1578
XmiI	GTMKAC	2 cut(s)	1770, 2554
XmnI	GAANNNNTTC	1 cut(s)	1009
XspI	CTAG	9 cut(s)	273, 311, 740, 1389, 1790, 1970, 2058, 2186, 2808
ZrmI	AGTACT	2 cut(s)	1152, 2822
Zsp2I	ATGCAT	1 cut(s)	2525

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.