Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0012427

Physical Location & Seq

Genomic Coordinates Reverse (-)

42891833 .. 42897421

Gene Structure 5589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG257100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1965 bp

ATGGCCTCCACGACCCGGCCCTTCATCTTCGCCCTCGCTTTCCTCACTATTTACACCGCCCTGCCACTCTCCCTCTCTCAGACCACCACCGAAGCCCCGGCGCCGGCCGCCGATTTGTGCAACGGCGTCTTCATATCCTACTCCTACACCGACGGCAAGCAGATCGCCCCCACCGTTCCGGCGCGGCAGCCCTACCGGTTCGAGTCCGTGCTGACTGTGCTCAACAACGGCGAGGAGGACCTCAAGTCGTGGAAGGTGTTCGTAGGGTTTCAGCACGGCGAGTACTTGGTCTCTGCTGCCAATGCTGTGCTCGCCGACGGGAGTGCGTATCCCGGAAGTGTGGAGAACGGCACCGTTTTCGCCGGGTTCCCGCAGACCGATCTGAAGACGGCGATCAAGACGGCCGGCGACTTGACGCAGATGCAGGTGCAGGTGAAGTTGATCGGGACTCAGTTCGGCGTGGCGCCGCCGAATGTTCCGATGCCGGCCAATATCTCTTTGGCTAATGATGGCTTTCGTTGCCCCAAGGCCTCATTGCAAGGGAAGAGTGAAATGCAAGTCTGCTGCATTGTAGACTCTACGGTGAAAACAAACTTCACTGCAGATGAAGAGTTTCTCCCTCGCCAGAATGGAGATCTTTCAATCATGTATGATGTGACGCGGACGTATGGATCAAGTTACTTTGCACAAGTGACAATCTCCAACCAGAACTCTCTAGGCCGTCTTGATAGTTGGAAGTTGAGCTGGGACTGGATGGCACAAGAGTTTATCAATACGATGAGAGGGGCCTATCCATCTGTCGTTGATTCTTCTGAATGCATATTTGGCGAACAAGGTAAATACTATGCGGATCTAGACTTTGCCAATGTCTTGAGTTGTGAAAAAAGGCCAACCATTATTGACCTGCCTCTGGAAAAGACTAATGACACTAAACTTGGTATGATCCCTTATTGTTGCCGAAATGGTACTATCTTGCCAACAACAATGGATGCAACCAAGTCAAAATCTTCATTCCAGATGGAAGTCTATAAAATGCCTCCAAATATCAACCGCTCTGTGATCATACCACCACAAAACTGGGCAATCAATGGCACTCTCAACCCTGATTACAAATGTGGTCCTCCTGTGCGGGTGAGTCCTAGTCAATTCCCTGATGCAAGTGGCTTACCGGTGAATTCAACTGCAGTAGCCAGCTGGCAGGTTGTGTGCAATATTACACAGGTCAAGGGAGCAAGCCCTAGATGCTGTGTTTCATTTTCTGCTTACTTCAACGAGTCTGTTGTACCATGCAAAACTTGTGCGTGTGGGTGCCCTAGAAATACAGCTCAAACTTGTAGCACAACTGCACCGGCTATGCTTCTTCCACCAGAGTCGCTTCTCGTTCCCTTTGAGAACCGAACTGTCAAGGCAAAAGCTTGGGCTGAGCTTAAACACCTAGCAGATCCGAACCCAATGCCCTGTGGTGATAACTGTGGGGTCAGCATTAACTGGCACGTACTCTCAGACTACAGTAAAGGATGGACTGCAAGGGTTACACTCTTCAACTGGGGCGAAACTTCTTTTGCTGATTGGTTTACTGCAGTACAACTGGATAAAGCTGTTCCTGGTTTTGAAAAAATGTACTCTTTCAACGCTACTACTGTGGGAACGGATGGGGTCAACAATACGGTGTTTATGCAGGGTCTTGAAGGATTGAACTACCTTGTGGCAGAAGTAGATGGAGCCAACCCAAAGAAGGATCCTAGGGTGCCTGGGAAGCAGCAATCAGTGATCTCATTTACAAAGAAGCTTACTCCTGGAATTAATGTGGCTGGTAGAGATGGGTTTCCGACAAAAGTGTTCTTCAATGGGGAGGAGTGCTCACTTCCTGATATATACCCAAGTAGTGCTTACAGAACAAGCTCAGCCATGATGATGTTTCCTGTCCTCCTAATGGTTGCAGTGTTCATGTTGATGCAGCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0005886 GO:0005911 GO:0007275 GO:0008150 GO:0009506 GO:0009653 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0012505 GO:0016020 GO:0016043 GO:0016049 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0031224 GO:0031225 GO:0031226 GO:0031410 GO:0031982 GO:0031984 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0046658 GO:0048364 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0055044 GO:0060560 GO:0071695 GO:0071840 GO:0071944 GO:0090558 GO:0090627 GO:0097708 GO:0098791 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

COBRA

Protein Analysis

654

Amino Acids

71.37

Weight (kDa)

5.54

Isoelectric Point (pI)

32.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COBRA	PF04833	227 - 406	2.2e-64	COBRA-like protein
COB_C	PF25079	414 - 627	1.2e-100	COBRA family C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012427)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G16120
fragaria_vesca	FvH4_4g19240
malus_domestica	MD13G1159600.v1.1 MD16G1159300.v1.1
prunus_persica	Prupe.1G126300_v2.0.a1
pyrus_communis	pycom13g13600 pycom16g13430
rosa_chinensis	RchiOBHm_Chr4g0424221
rosa_laevigata	RLG00000007495
rosa_multiflora	Rmu_sc0000980.1_g000001 Rmu_sc0002260.1_g000034 Rmu_sc0019001.1_g000001
rosa_roxburghii	Rroxscaffold_5G00366170
rosa_rugosa	Rorug04G0194400
rosa_samantha	Rh4AG251800 Rh4BG257100 Rh4CG267700 Rh4DG251500
rosa_wichuraiana	Rw4G021710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	415, 421
Acc36I	ACCTGC	4 cut(s)	415, 421, 912, 1189
AccB1I	GGYRCC	5 cut(s)	100, 350, 463, 1308, 1747
AccBSI	CCGCTC	1 cut(s)	1053
AccI	GTMKAC	1 cut(s)	573
AccII	CGCG	2 cut(s)	184, 661
AciI	CCGC	9 cut(s)	57, 108, 184, 371, 467, 661, 848, 1051, 1129
AclWI	GGATC	6 cut(s)	679, 858, 937, 1436, 1733, 1746
AcoI	YGGCCR	3 cut(s)	105, 402, 486
AcsI	RAATTY	1 cut(s)	1174
AcuI	CTGAAG	1 cut(s)	404
AcyI	GRCGYC	3 cut(s)	101, 126, 464
AfaI	GTAC	6 cut(s)	284, 967, 1284, 1497, 1584, 1622
AfiI	CCNNNNNNNGG	5 cut(s)	15, 103, 910, 1735, 1933
AgeI	ACCGGT	2 cut(s)	195, 1168
AgsI	TTSAA	9 cut(s)	642, 1179, 1270, 1543, 1613, 1630, 1688, 1696, 1846
AhdI	GACNNNNNGTC	1 cut(s)	244
AjnI	CCWGG	3 cut(s)	1603, 1750, 1795
AjuI	GAANNNNNNNTTGG	2 cut(s)	807, 839
AluBI	AGCT	8 cut(s)	744, 1194, 1325, 1415, 1426, 1598, 1789, 1902
AluI	AGCT	8 cut(s)	744, 1194, 1325, 1415, 1426, 1598, 1789, 1902
Alw21I	GWGCWC	3 cut(s)	222, 312, 1862
Alw26I	GTCTC	1 cut(s)	295
AlwI	GGATC	6 cut(s)	679, 858, 937, 1436, 1733, 1746
AoxI	GGCC	9 cut(s)	3, 17, 105, 402, 486, 528, 718, 786, 887
ApeKI	GCWGC	5 cut(s)	187, 296, 564, 1759, 1957
ApoI	RAATTY	1 cut(s)	1174
AseI	ATTAAT	1 cut(s)	1803
AsiGI	ACCGGT	2 cut(s)	195, 1168
Asp700I	GAANNNNTTC	2 cut(s)	257, 612
AspA2I	CCTAGG	1 cut(s)	1742
AspLEI	GCGC	3 cut(s)	103, 184, 466
AspS9I	GGNCC	4 cut(s)	18, 238, 786, 1118
AsuC2I	CCSGG	4 cut(s)	16, 98, 333, 364
AsuHPI	GGTGA	5 cut(s)	445, 595, 1144, 1183, 1475
AvaII	GGWCC	2 cut(s)	238, 1118
AvrII	CCTAGG	1 cut(s)	1742
BaeGI	GKGCMC	1 cut(s)	1313
BamHI	GGATCC	1 cut(s)	1738
BanI	GGYRCC	5 cut(s)	100, 350, 463, 1308, 1747
BbsI	GAAGAC	2 cut(s)	121, 392
Bbv12I	GWGCWC	3 cut(s)	222, 312, 1862
BbvI	GCAGC	4 cut(s)	199, 283, 551, 1771
BccI	CCATC	8 cut(s)	503, 748, 802, 1012, 1512, 1646, 1712, 1814
BceAI	ACGGC	8 cut(s)	139, 169, 244, 292, 364, 405, 417, 705
BcgI	CGANNNNNNTGC	8 cut(s)	145, 179, 305, 339, 340, 374, 1435, 1469
BciT130I	CCWGG	3 cut(s)	1605, 1752, 1797
BciVI	GTATCC	1 cut(s)	339
BclI	TGATCA	1 cut(s)	1059
BcnI	CCSGG	4 cut(s)	16, 98, 333, 364
BcoDI	GTCTC	1 cut(s)	295
BfaI	CTAG	7 cut(s)	716, 854, 1140, 1239, 1314, 1436, 1743
BfmI	CTRYAG	4 cut(s)	600, 1182, 1507, 1578
BfoI	RGCGCY	2 cut(s)	104, 467
BfuAI	ACCTGC	4 cut(s)	415, 421, 912, 1189
BfuI	GTATCC	1 cut(s)	339
BglII	AGATCT	1 cut(s)	634
BisI	GCNGC	8 cut(s)	108, 185, 188, 297, 467, 565, 1760, 1958
BlnI	CCTAGG	1 cut(s)	1742
BlpI	GCTNAGC	2 cut(s)	1422, 1903
BlsI	GCNGC	8 cut(s)	109, 186, 189, 298, 468, 566, 1761, 1959
BmcAI	AGTACT	1 cut(s)	284
Bme1390I	CCNGG	7 cut(s)	16, 98, 333, 364, 1605, 1752, 1797
Bme18I	GGWCC	2 cut(s)	238, 1118
BmeRI	GACNNNNNGTC	1 cut(s)	244
BmgT120I	GGNCC	4 cut(s)	18, 238, 786, 1118
BmiI	GGNNCC	9 cut(s)	102, 352, 368, 465, 787, 1310, 1723, 1740, 1749
BmrFI	CCNGG	7 cut(s)	16, 98, 333, 364, 1605, 1752, 1797
BmrI	ACTGGG	2 cut(s)	1087, 1555
BmsI	GCATC	6 cut(s)	411, 471, 979, 1144, 1232, 1944
BmuI	ACTGGG	2 cut(s)	1087, 1555
BpiI	GAAGAC	2 cut(s)	121, 392
BplI	GAGNNNNNCTC	2 cut(s)	1844, 1876
Bpu1102I	GCTNAGC	2 cut(s)	1422, 1903
BpuEI	CTTGAG	2 cut(s)	227, 892
BpuMI	CCSGG	4 cut(s)	16, 98, 333, 364
BsaAI	YACGTR	1 cut(s)	1495
BsaHI	GRCGYC	3 cut(s)	101, 126, 464
BsaI	GGTCTC	1 cut(s)	295
BsaJI	CCNNGG	4 cut(s)	96, 525, 1742, 1751
BsaWI	WCCGGW	2 cut(s)	195, 1168
Bsc4I	CCNNNNNNNGG	5 cut(s)	15, 103, 910, 1735, 1933
Bse118I	RCCGGY	6 cut(s)	103, 195, 404, 484, 1168, 1348
Bse1I	ACTGG	5 cut(s)	755, 1082, 1493, 1550, 1593
Bse3DI	GCAATG	1 cut(s)	533
BseBI	CCWGG	3 cut(s)	1605, 1752, 1797
BseDI	CCNNGG	4 cut(s)	96, 525, 1742, 1751
BseGI	GGATG	4 cut(s)	759, 994, 1523, 1657
BseLI	CCNNNNNNNGG	5 cut(s)	15, 103, 910, 1735, 1933
BseMI	GCAATG	1 cut(s)	533
BseMII	CTCAG	5 cut(s)	92, 464, 1413, 1515, 1917
BseNI	ACTGG	5 cut(s)	755, 1082, 1493, 1550, 1593
BseRI	GAGGAG	2 cut(s)	248, 1868
BseSI	GKGCMC	1 cut(s)	1313
BseX3I	CGGCCG	2 cut(s)	105, 402
BseXI	GCAGC	4 cut(s)	199, 283, 551, 1771
BseYI	CCCAGC	1 cut(s)	744
BsgI	GTGCAG	2 cut(s)	449, 1329
Bsh1236I	CGCG	2 cut(s)	184, 661
Bsh1285I	CGRYCG	2 cut(s)	108, 405
BshFI	GGCC	9 cut(s)	5, 19, 107, 404, 488, 530, 720, 788, 889
BshNI	GGYRCC	5 cut(s)	100, 350, 463, 1308, 1747
BshTI	ACCGGT	2 cut(s)	195, 1168
BsiEI	CGRYCG	2 cut(s)	108, 405
BsiHKAI	GWGCWC	3 cut(s)	222, 312, 1862
BslFI	GGGAC	2 cut(s)	460, 761
BslI	CCNNNNNNNGG	5 cut(s)	15, 103, 910, 1735, 1933
BsmAI	GTCTC	1 cut(s)	295
BsmFI	GGGAC	2 cut(s)	460, 761
BsmI	GAATGC	1 cut(s)	821
BsnI	GGCC	9 cut(s)	5, 19, 107, 404, 488, 530, 720, 788, 889
Bso31I	GGTCTC	1 cut(s)	295
Bsp1286I	GDGCHC	4 cut(s)	222, 312, 1313, 1862
Bsp1720I	GCTNAGC	2 cut(s)	1422, 1903
BspACI	CCGC	9 cut(s)	57, 108, 184, 371, 467, 661, 848, 1051, 1129
BspANI	GGCC	9 cut(s)	5, 19, 107, 404, 488, 530, 720, 788, 889
BspCNI	CTCAG	5 cut(s)	91, 463, 1414, 1514, 1916
BspFNI	CGCG	2 cut(s)	184, 661
BspLI	GGNNCC	9 cut(s)	102, 352, 368, 465, 787, 1310, 1723, 1740, 1749
BspMAI	CTGCAG	3 cut(s)	604, 1186, 1582
BspMI	ACCTGC	4 cut(s)	415, 421, 912, 1189
BspPI	GGATC	6 cut(s)	679, 858, 937, 1436, 1733, 1746
BspT107I	GGYRCC	5 cut(s)	100, 350, 463, 1308, 1747
BspTNI	GGTCTC	1 cut(s)	295
BsrBI	CCGCTC	1 cut(s)	1053
BsrDI	GCAATG	1 cut(s)	533
BsrFI	RCCGGY	6 cut(s)	103, 195, 404, 484, 1168, 1348
BsrI	ACTGG	5 cut(s)	755, 1082, 1493, 1550, 1593
BssAI	RCCGGY	6 cut(s)	103, 195, 404, 484, 1168, 1348
BssECI	CCNNGG	4 cut(s)	96, 525, 1742, 1751
BssNI	GRCGYC	3 cut(s)	101, 126, 464
BssT1I	CCWWGG	2 cut(s)	525, 1742
Bst2UI	CCWGG	3 cut(s)	1605, 1752, 1797
Bst4CI	ACNGT	9 cut(s)	175, 217, 355, 583, 1402, 1472, 1511, 1642, 1669
Bst6I	CTCTTC	3 cut(s)	539, 603, 1544
BstACI	GRCGYC	3 cut(s)	101, 126, 464
BstBAI	YACGTR	1 cut(s)	1495
BstC8I	GCNNGC	8 cut(s)	105, 158, 312, 406, 486, 1192, 1196, 1234
BstDEI	CTNAG	5 cut(s)	78, 450, 1422, 1501, 1903
BstF5I	GGATG	4 cut(s)	759, 994, 1523, 1657
BstFNI	CGCG	2 cut(s)	184, 661
BstH2I	RGCGCY	2 cut(s)	104, 467
BstHHI	GCGC	3 cut(s)	103, 184, 466
BstMAI	GTCTC	1 cut(s)	295
BstMCI	CGRYCG	2 cut(s)	108, 405
BstMWI	GCNNNNNNNGC	8 cut(s)	107, 217, 302, 311, 519, 825, 1242, 1756
BstNI	CCWGG	3 cut(s)	1605, 1752, 1797
BstSCI	CCNGG	7 cut(s)	14, 96, 331, 362, 1603, 1750, 1795
BstSFI	CTRYAG	4 cut(s)	600, 1182, 1507, 1578
BstSLI	GKGCMC	1 cut(s)	1313
BstUI	CGCG	2 cut(s)	184, 661
BstV1I	GCAGC	4 cut(s)	199, 283, 551, 1771
BstV2I	GAAGAC	2 cut(s)	121, 392
BstX2I	RGATCY	4 cut(s)	634, 850, 1441, 1738
BstXI	CCANNNNNNTGG	1 cut(s)	1077
BstYI	RGATCY	4 cut(s)	634, 850, 1441, 1738
BstZI	CGGCCG	2 cut(s)	105, 402
BsuI	GTATCC	1 cut(s)	339
BsuRI	GGCC	9 cut(s)	5, 19, 107, 404, 488, 530, 720, 788, 889
BtsCI	GGATG	4 cut(s)	759, 994, 1523, 1657
BtsI	GCAGTG	2 cut(s)	597, 1947
BtsIMutI	CAGTG	3 cut(s)	597, 1773, 1947
BveI	ACCTGC	4 cut(s)	415, 421, 912, 1189
Cac8I	GCNNGC	8 cut(s)	105, 158, 312, 406, 486, 1192, 1196, 1234
CfoI	GCGC	3 cut(s)	103, 184, 466
Cfr10I	RCCGGY	6 cut(s)	103, 195, 404, 484, 1168, 1348
Cfr13I	GGNCC	4 cut(s)	18, 238, 786, 1118
CseI	GACGC	3 cut(s)	115, 424, 667
Csp6I	GTAC	6 cut(s)	283, 966, 1283, 1496, 1583, 1621
CspAI	ACCGGT	2 cut(s)	195, 1168
CviAII	CATG	4 cut(s)	646, 1287, 1909, 1948
CviQI	GTAC	6 cut(s)	283, 966, 1283, 1496, 1583, 1621
DdeI	CTNAG	5 cut(s)	78, 450, 1422, 1501, 1903
DinI	GGCGCC	2 cut(s)	102, 465
DriI	GACNNNNNGTC	1 cut(s)	244
EaeI	YGGCCR	3 cut(s)	105, 402, 486
EagI	CGGCCG	2 cut(s)	105, 402
Eam1104I	CTCTTC	3 cut(s)	539, 603, 1544
Eam1105I	GACNNNNNGTC	1 cut(s)	244
EarI	CTCTTC	3 cut(s)	539, 603, 1544
EclXI	CGGCCG	2 cut(s)	105, 402
Eco130I	CCWWGG	2 cut(s)	525, 1742
Eco147I	AGGCCT	1 cut(s)	530
Eco31I	GGTCTC	1 cut(s)	295
Eco47I	GGWCC	2 cut(s)	238, 1118
Eco52I	CGGCCG	2 cut(s)	105, 402
Eco57I	CTGAAG	1 cut(s)	404
EcoO109I	RGGNCCY	2 cut(s)	238, 786
EcoRI	GAATTC	1 cut(s)	1174
EcoRII	CCWGG	3 cut(s)	1603, 1750, 1795
EcoT14I	CCWWGG	2 cut(s)	525, 1742
EcoT22I	ATGCAT	1 cut(s)	821
EgeI	GGCGCC	2 cut(s)	102, 465
EheI	GGCGCC	2 cut(s)	102, 465
ErhI	CCWWGG	2 cut(s)	525, 1742
FaeI	CATG	4 cut(s)	649, 1290, 1912, 1951
FalI	AAGNNNNNCTT	2 cut(s)	1873, 1905
FaqI	GGGAC	2 cut(s)	460, 761
FatI	CATG	4 cut(s)	645, 1286, 1908, 1947
FauI	CCCGC	2 cut(s)	378, 1122
FbaI	TGATCA	1 cut(s)	1059
FblI	GTMKAC	1 cut(s)	573
Fnu4HI	GCNGC	8 cut(s)	108, 185, 188, 297, 467, 565, 1760, 1958
FokI	GGATG	4 cut(s)	766, 1001, 1530, 1664
Fsp4HI	GCNGC	8 cut(s)	108, 185, 188, 297, 467, 565, 1760, 1958
FspBI	CTAG	7 cut(s)	716, 854, 1140, 1239, 1314, 1436, 1743
GlaI	GCGC	3 cut(s)	102, 183, 465
GluI	GCNGC	8 cut(s)	108, 185, 188, 297, 467, 565, 1760, 1958
GsaI	CCCAGC	1 cut(s)	748
HaeII	RGCGCY	2 cut(s)	104, 467
HaeIII	GGCC	9 cut(s)	5, 19, 107, 404, 488, 530, 720, 788, 889
HgaI	GACGC	3 cut(s)	115, 424, 667
HhaI	GCGC	3 cut(s)	103, 184, 466
Hin1I	GRCGYC	3 cut(s)	101, 126, 464
Hin1II	CATG	4 cut(s)	649, 1290, 1912, 1951
Hin6I	GCGC	3 cut(s)	101, 182, 464
HinP1I	GCGC	3 cut(s)	101, 182, 464
HincII	GTYRAC	1 cut(s)	1660
HindII	GTYRAC	1 cut(s)	1660
HindIII	AAGCTT	2 cut(s)	1413, 1787
HinfI	GANTC	7 cut(s)	203, 448, 575, 806, 1135, 1274, 1370
HphI	GGTGA	5 cut(s)	445, 595, 1144, 1183, 1475
Hpy166II	GTNNAC	3 cut(s)	574, 1575, 1660
Hpy188I	TCNGA	7 cut(s)	81, 384, 480, 814, 1446, 1504, 1830
Hpy188III	TCNNGA	9 cut(s)	397, 445, 725, 854, 871, 911, 1015, 1685, 1868
Hpy8I	GTNNAC	3 cut(s)	574, 1575, 1660
Hpy99I	CGWCG	2 cut(s)	155, 320
HpyAV	CCTTC	4 cut(s)	31, 247, 1682, 1729
HpyCH4III	ACNGT	9 cut(s)	175, 217, 355, 583, 1402, 1472, 1511, 1642, 1669
HpyCH4IV	ACGT	2 cut(s)	665, 1494
HpyF10VI	GCNNNNNNNGC	8 cut(s)	107, 217, 302, 311, 519, 825, 1242, 1756
HpyF3I	CTNAG	5 cut(s)	78, 450, 1422, 1501, 1903
HpySE526I	ACGT	2 cut(s)	665, 1494
Hsp92I	GRCGYC	3 cut(s)	101, 126, 464
Hsp92II	CATG	4 cut(s)	649, 1290, 1912, 1951
HspAI	GCGC	3 cut(s)	101, 182, 464
KasI	GGCGCC	2 cut(s)	100, 463
KroI	GCCGGC	3 cut(s)	103, 404, 484
KroNI	GCCGGC	3 cut(s)	105, 406, 486
Ksp22I	TGATCA	1 cut(s)	1059
LmnI	GCTCC	2 cut(s)	1229, 1721
Lsp1109I	GCAGC	4 cut(s)	199, 283, 551, 1771
LweI	GCATC	6 cut(s)	411, 471, 979, 1144, 1232, 1944
MaeI	CTAG	7 cut(s)	716, 854, 1140, 1239, 1314, 1436, 1743
MaeII	ACGT	2 cut(s)	665, 1494
MaeIII	GTNAC	4 cut(s)	655, 677, 691, 1531
MbiI	CCGCTC	1 cut(s)	1053
MflI	RGATCY	4 cut(s)	634, 850, 1441, 1738
MhlI	GDGCHC	4 cut(s)	222, 312, 1313, 1862
MluCI	AATT	3 cut(s)	1145, 1174, 1800
Mly113I	GGCGCC	2 cut(s)	101, 464
MlyI	GAGTC	6 cut(s)	212, 442, 569, 1144, 1283, 1379
MmeI	TCCRAC	3 cut(s)	713, 726, 1853
Mph1103I	ATGCAT	1 cut(s)	821
MroNI	GCCGGC	3 cut(s)	103, 404, 484
MroXI	GAANNNNTTC	2 cut(s)	257, 612
MseI	TTAA	3 cut(s)	1428, 1485, 1803
MslI	CAYNNNNRTG	2 cut(s)	1913, 1952
MspA1I	CMGCKG	1 cut(s)	1194
MspR9I	CCNGG	7 cut(s)	16, 98, 333, 364, 1605, 1752, 1797
Mva1269I	GAATGC	1 cut(s)	821
MvaI	CCWGG	3 cut(s)	1605, 1752, 1797
MvnI	CGCG	2 cut(s)	184, 661
MwoI	GCNNNNNNNGC	8 cut(s)	107, 217, 302, 311, 519, 825, 1242, 1756
NaeI	GCCGGC	3 cut(s)	105, 406, 486
NarI	GGCGCC	2 cut(s)	101, 464
NciI	CCSGG	4 cut(s)	16, 98, 333, 364
NgoMIV	GCCGGC	3 cut(s)	103, 404, 484
NlaIII	CATG	4 cut(s)	649, 1290, 1912, 1951
NlaIV	GGNNCC	9 cut(s)	102, 352, 368, 465, 787, 1310, 1723, 1740, 1749
NmuCI	GTSAC	2 cut(s)	655, 691
NsiI	ATGCAT	1 cut(s)	821
PaqCI	CACCTGC	2 cut(s)	415, 421
PceI	AGGCCT	1 cut(s)	530
PcsI	WCGNNNNNNNCGW	1 cut(s)	171
PctI	GAATGC	1 cut(s)	821
PdiI	GCCGGC	3 cut(s)	105, 406, 486
PdmI	GAANNNNTTC	2 cut(s)	257, 612
PfeI	GAWTC	1 cut(s)	806
PfoI	TCCNGGA	2 cut(s)	331, 1795
PinAI	ACCGGT	2 cut(s)	195, 1168
PkrI	GCNGC	8 cut(s)	109, 186, 189, 298, 468, 566, 1761, 1959
PleI	GAGTC	6 cut(s)	211, 442, 569, 1143, 1282, 1378
PluTI	GGCGCC	2 cut(s)	104, 467
PpsI	GAGTC	6 cut(s)	211, 442, 569, 1143, 1282, 1378
Ppu21I	YACGTR	1 cut(s)	1495
PpuMI	RGGWCCY	1 cut(s)	238
PshBI	ATTAAT	1 cut(s)	1803
Psp5II	RGGWCCY	1 cut(s)	238
Psp6I	CCWGG	3 cut(s)	1603, 1750, 1795
PspFI	CCCAGC	1 cut(s)	744
PspGI	CCWGG	3 cut(s)	1603, 1750, 1795
PspN4I	GGNNCC	9 cut(s)	102, 352, 368, 465, 787, 1310, 1723, 1740, 1749
PspPI	GGNCC	4 cut(s)	18, 238, 786, 1118
PspPPI	RGGWCCY	1 cut(s)	238
PstI	CTGCAG	3 cut(s)	604, 1186, 1582
PsuI	RGATCY	4 cut(s)	634, 850, 1441, 1738
PvuII	CAGCTG	1 cut(s)	1194
RsaI	GTAC	6 cut(s)	284, 967, 1284, 1497, 1584, 1622
RsaNI	GTAC	6 cut(s)	283, 966, 1283, 1496, 1583, 1621
RseI	CAYNNNNRTG	2 cut(s)	1913, 1952
SaqAI	TTAA	3 cut(s)	1428, 1485, 1803
SatI	GCNGC	8 cut(s)	108, 185, 188, 297, 467, 565, 1760, 1958
Sau96I	GGNCC	4 cut(s)	18, 238, 786, 1118
ScaI	AGTACT	1 cut(s)	284
SchI	GAGTC	6 cut(s)	212, 442, 569, 1144, 1283, 1379
ScrFI	CCNGG	7 cut(s)	16, 98, 333, 364, 1605, 1752, 1797
SduI	GDGCHC	4 cut(s)	222, 312, 1313, 1862
SfaNI	GCATC	6 cut(s)	411, 471, 979, 1144, 1232, 1944
SfcI	CTRYAG	4 cut(s)	600, 1182, 1507, 1578
SfoI	GGCGCC	2 cut(s)	102, 465
SinI	GGWCC	2 cut(s)	238, 1118
SmiMI	CAYNNNNRTG	2 cut(s)	1913, 1952
SmlI	CTYRAG	2 cut(s)	242, 871
SmoI	CTYRAG	2 cut(s)	242, 871
Sse9I	AATT	3 cut(s)	1145, 1174, 1800
SseBI	AGGCCT	1 cut(s)	530
SsiI	CCGC	9 cut(s)	57, 108, 184, 371, 467, 661, 848, 1051, 1129
SspDI	GGCGCC	2 cut(s)	100, 463
SspI	AATATT	1 cut(s)	1213
SspMI	CTAG	7 cut(s)	716, 854, 1140, 1239, 1314, 1436, 1743
StuI	AGGCCT	1 cut(s)	530
StyD4I	CCNGG	7 cut(s)	14, 96, 331, 362, 1603, 1750, 1795
StyI	CCWWGG	2 cut(s)	525, 1742
TaaI	ACNGT	9 cut(s)	175, 217, 355, 583, 1402, 1472, 1511, 1642, 1669
TaiI	ACGT	2 cut(s)	668, 1497
TaqI	TCGA	1 cut(s)	201
TaqII	GACCGA	1 cut(s)	392
TasI	AATT	3 cut(s)	1145, 1174, 1800
TatI	WGTACW	3 cut(s)	282, 1582, 1620
TauI	GCSGC	3 cut(s)	110, 187, 469
TfiI	GAWTC	1 cut(s)	806
Tru1I	TTAA	3 cut(s)	1428, 1485, 1803
Tru9I	TTAA	3 cut(s)	1428, 1485, 1803
TscAI	CASTG	3 cut(s)	604, 1773, 1947
TseFI	GTSAC	2 cut(s)	655, 691
TseI	GCWGC	5 cut(s)	187, 296, 564, 1759, 1957
Tsp45I	GTSAC	2 cut(s)	655, 691
TspDTI	ATGAA	6 cut(s)	13, 121, 621, 999, 1242, 1936
TspGWI	ACGGA	2 cut(s)	196, 1664
TspRI	CASTG	3 cut(s)	604, 1773, 1947
VpaK11BI	GGWCC	2 cut(s)	238, 1118
VspI	ATTAAT	1 cut(s)	1803
XapI	RAATTY	1 cut(s)	1174
XbaI	TCTAGA	1 cut(s)	853
XcmI	CCANNNNNNNNNTGG	2 cut(s)	496, 1074
XmaJI	CCTAGG	1 cut(s)	1742
XmiI	GTMKAC	1 cut(s)	573
XmnI	GAANNNNTTC	2 cut(s)	257, 612
XspI	CTAG	7 cut(s)	716, 854, 1140, 1239, 1314, 1436, 1743
ZrmI	AGTACT	1 cut(s)	284
Zsp2I	ATGCAT	1 cut(s)	821

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.