Rmu_sc0019001.1_g000001

COBRA-like protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0019001.1
Physical Location & Seq
Forward (+)
1 .. 1733
1733 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0019001.1_g000001.1.cds

Sequence Viewer

Length: 1424 bp
ggaagagtgaaatgcaagtctgctgcattgtagactctacggtgaaaacaaacatcactgcagatgaagagtttctccctcgccagaatggagatctttcaatcatgtatgatgtgacccggacgtatggatcaagttactttgcacaagtgacaatctccaaccataactctctaggccgtcttgatagttggaagttgagctgggactggatggcacaagagtttatcaatacgatgagaggggcttatccatctgttgttgattcttctgaatgcatatttggcgaacaaggtcaatactacgcggatctagactttgccaatgtcttgagttgtgaaaaaaggccaaccattattgatctgcctctggaaaagactaatgacactaaacttggtatgatcccttattgttgccgaaatggtactatcttgccaacaacaatggatgcaaccaagtcaaaatcttcattccagatggaagtctataaaatgcctccaaatatcaaccgctctgtgatcataccaccacaaaactgggcaatcaatggcactctcaaccctgattacaaatgtggtcctcctgtgcgggtgagtcctagtcaattccctgatgcaagtggcttaccagtgaattcaactgcagtagccagctggcaggttgtgtgcaatattacacaggccaagggagcaagccctagatgctgtgtttcattttctgcttacttcaacgagtctgttgtaccatgcaaaacttgtgcgtgtgggtgccctagaaatacagctcaaacttgtagcacaactgcaccggctatgcttcttccaccagagtcgcttctcgtcccctttgagaaccgaactgtcaaggcaaaagcttgggctgagcttaaacacctagcagatccgaacccaatgccctgtggtgataactgtggagtcagcattaactggcacgtactctcagactacagtaaaggatggactgcaagggttacactcttcaactggggcgaaacttcttttgctgattggtttactgcagtacaactggataaagctgttcctggttttgaaaaaatgtactctttcaacgctactactgtgggaacggatggggtcaacaatacggtgtttatgcagggtttggaaggattgaactaccttgtggcagaagtagatggagccaacccaaagaaggatcctagggtgcctggcaagcagcaatcagtgatctcatttacaaagaagcttactcctggaattaatgtggctggtagagatgggtttccgacaaaagtgttcttcaatggggaggagtgctcacttcctgatatatacccaagtagtgcttacagaacaagctcagccatgatgatgtttcctgtcctcctaatggttgtagtgttcatgttgatgcagcaatag

Protein Analysis

473

Amino Acids

52.15

Weight (kDa)

5.6

Isoelectric Point (pI)

35.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012427)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 648
AccB1I GGYRCC 2 cut(s) 767, 1206
AccBSI CCGCTC 1 cut(s) 512
AccI GTMKAC 1 cut(s) 32
AccII CGCG 1 cut(s) 307
AciI CCGC 3 cut(s) 307, 510, 588
AclWI GGATC 6 cut(s) 138, 317, 396, 895, 1192, 1205
AcsI RAATTY 1 cut(s) 633
AfaI GTAC 5 cut(s) 426, 743, 956, 1043, 1081
AfiI CCNNNNNNNGG 2 cut(s) 1194, 1392
AgsI TTSAA 8 cut(s) 101, 638, 729, 1002, 1072, 1089, 1155, 1305
AjnI CCWGG 3 cut(s) 1062, 1209, 1254
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AluBI AGCT 8 cut(s) 203, 653, 784, 874, 885, 1057, 1248, 1361
AluI AGCT 8 cut(s) 203, 653, 784, 874, 885, 1057, 1248, 1361
Alw21I GWGCWC 1 cut(s) 1321
AlwI GGATC 6 cut(s) 138, 317, 396, 895, 1192, 1205
AoxI GGCC 3 cut(s) 177, 346, 680
ApeKI GCWGC 3 cut(s) 23, 1218, 1416
ApoI RAATTY 1 cut(s) 633
AseI ATTAAT 1 cut(s) 1262
Asp700I GAANNNNTTC 1 cut(s) 71
AspA2I CCTAGG 1 cut(s) 1201
AspS9I GGNCC 1 cut(s) 577
AsuC2I CCSGG 1 cut(s) 120
AsuHPI GGTGA 3 cut(s) 54, 603, 934
AvaII GGWCC 1 cut(s) 577
AvrII CCTAGG 1 cut(s) 1201
BaeGI GKGCMC 1 cut(s) 772
BamHI GGATCC 1 cut(s) 1197
BanI GGYRCC 2 cut(s) 767, 1206
Bbv12I GWGCWC 1 cut(s) 1321
BbvI GCAGC 2 cut(s) 10, 1230
BccI CCATC 7 cut(s) 207, 261, 471, 971, 1105, 1171, 1273
BceAI ACGGC 1 cut(s) 164
BcgI CGANNNNNNTGC 2 cut(s) 894, 928
BciT130I CCWGG 3 cut(s) 1064, 1211, 1256
BclI TGATCA 1 cut(s) 518
BcnI CCSGG 1 cut(s) 120
BfaI CTAG 7 cut(s) 175, 313, 599, 698, 773, 895, 1202
BfmI CTRYAG 4 cut(s) 59, 641, 966, 1037
BfuAI ACCTGC 1 cut(s) 648
BglII AGATCT 1 cut(s) 93
BisI GCNGC 3 cut(s) 24, 1219, 1417
BlnI CCTAGG 1 cut(s) 1201
BlpI GCTNAGC 2 cut(s) 881, 1362
BlsI GCNGC 3 cut(s) 25, 1220, 1418
Bme1390I CCNGG 4 cut(s) 120, 1064, 1211, 1256
Bme18I GGWCC 1 cut(s) 577
BmgT120I GGNCC 1 cut(s) 577
BmiI GGNNCC 4 cut(s) 769, 1182, 1199, 1208
BmrFI CCNGG 4 cut(s) 120, 1064, 1211, 1256
BmrI ACTGGG 2 cut(s) 546, 1014
BmsI GCATC 4 cut(s) 438, 603, 691, 1403
BmuI ACTGGG 2 cut(s) 546, 1014
BplI GAGNNNNNCTC 2 cut(s) 1303, 1335
Bpu1102I GCTNAGC 2 cut(s) 881, 1362
BpuEI CTTGAG 1 cut(s) 351
BpuMI CCSGG 1 cut(s) 120
BsaAI YACGTR 1 cut(s) 954
BsaJI CCNNGG 2 cut(s) 683, 1201
Bsc4I CCNNNNNNNGG 2 cut(s) 1194, 1392
Bse118I RCCGGY 1 cut(s) 807
Bse1I ACTGG 6 cut(s) 214, 541, 628, 952, 1009, 1052
BseBI CCWGG 3 cut(s) 1064, 1211, 1256
BseDI CCNNGG 2 cut(s) 683, 1201
BseGI GGATG 4 cut(s) 218, 453, 982, 1116
BseLI CCNNNNNNNGG 2 cut(s) 1194, 1392
BseMII CTCAG 3 cut(s) 872, 974, 1376
BseNI ACTGG 6 cut(s) 214, 541, 628, 952, 1009, 1052
BseRI GAGGAG 1 cut(s) 1327
BseSI GKGCMC 1 cut(s) 772
BseXI GCAGC 2 cut(s) 10, 1230
BseYI CCCAGC 1 cut(s) 203
BsgI GTGCAG 1 cut(s) 788
Bsh1236I CGCG 1 cut(s) 307
BshFI GGCC 3 cut(s) 179, 348, 682
BshNI GGYRCC 2 cut(s) 767, 1206
BsiHKAI GWGCWC 1 cut(s) 1321
BsiSI CCGG 2 cut(s) 120, 808
BslFI GGGAC 2 cut(s) 220, 826
BslI CCNNNNNNNGG 2 cut(s) 1194, 1392
BsmFI GGGAC 2 cut(s) 220, 826
BsmI GAATGC 1 cut(s) 280
BsnI GGCC 3 cut(s) 179, 348, 682
Bsp1286I GDGCHC 2 cut(s) 772, 1321
Bsp143I GATC 9 cut(s) 93, 130, 309, 360, 401, 518, 900, 1197, 1229
Bsp1720I GCTNAGC 2 cut(s) 881, 1362
BspACI CCGC 3 cut(s) 307, 510, 588
BspANI GGCC 3 cut(s) 179, 348, 682
BspCNI CTCAG 3 cut(s) 873, 973, 1375
BspFNI CGCG 1 cut(s) 307
BspLI GGNNCC 4 cut(s) 769, 1182, 1199, 1208
BspMAI CTGCAG 3 cut(s) 63, 645, 1041
BspMI ACCTGC 1 cut(s) 648
BspPI GGATC 6 cut(s) 138, 317, 396, 895, 1192, 1205
BspT107I GGYRCC 2 cut(s) 767, 1206
BsrBI CCGCTC 1 cut(s) 512
BsrFI RCCGGY 1 cut(s) 807
BsrI ACTGG 6 cut(s) 214, 541, 628, 952, 1009, 1052
BssAI RCCGGY 1 cut(s) 807
BssECI CCNNGG 2 cut(s) 683, 1201
BssMI GATC 9 cut(s) 93, 130, 309, 360, 401, 518, 900, 1197, 1229
BssT1I CCWWGG 2 cut(s) 683, 1201
Bst2UI CCWGG 3 cut(s) 1064, 1211, 1256
Bst4CI ACNGT 6 cut(s) 42, 861, 931, 970, 1101, 1128
Bst6I CTCTTC 2 cut(s) 62, 1003
BstBAI YACGTR 1 cut(s) 954
BstC8I GCNNGC 4 cut(s) 651, 655, 693, 1216
BstDEI CTNAG 3 cut(s) 881, 960, 1362
BstF5I GGATG 4 cut(s) 218, 453, 982, 1116
BstFNI CGCG 1 cut(s) 307
BstKTI GATC 9 cut(s) 96, 133, 312, 363, 404, 521, 903, 1200, 1232
BstMBI GATC 9 cut(s) 93, 130, 309, 360, 401, 518, 900, 1197, 1229
BstMWI GCNNNNNNNGC 4 cut(s) 284, 688, 701, 1215
BstNI CCWGG 3 cut(s) 1064, 1211, 1256
BstSCI CCNGG 4 cut(s) 118, 1062, 1209, 1254
BstSFI CTRYAG 4 cut(s) 59, 641, 966, 1037
BstSLI GKGCMC 1 cut(s) 772
BstUI CGCG 1 cut(s) 307
BstV1I GCAGC 2 cut(s) 10, 1230
BstX2I RGATCY 4 cut(s) 93, 309, 900, 1197
BstXI CCANNNNNNTGG 1 cut(s) 536
BstYI RGATCY 4 cut(s) 93, 309, 900, 1197
BsuRI GGCC 3 cut(s) 179, 348, 682
BtsCI GGATG 4 cut(s) 218, 453, 982, 1116
BtsI GCAGTG 1 cut(s) 56
BtsIMutI CAGTG 3 cut(s) 56, 635, 1232
BveI ACCTGC 1 cut(s) 648
Cac8I GCNNGC 4 cut(s) 651, 655, 693, 1216
Cfr10I RCCGGY 1 cut(s) 807
Cfr13I GGNCC 1 cut(s) 577
Csp6I GTAC 5 cut(s) 425, 742, 955, 1042, 1080
CviAII CATG 4 cut(s) 105, 746, 1368, 1407
CviQI GTAC 5 cut(s) 425, 742, 955, 1042, 1080
DdeI CTNAG 3 cut(s) 881, 960, 1362
DpnI GATC 9 cut(s) 95, 132, 311, 362, 403, 520, 902, 1199, 1231
DpnII GATC 9 cut(s) 93, 130, 309, 360, 401, 518, 900, 1197, 1229
Eam1104I CTCTTC 2 cut(s) 62, 1003
EarI CTCTTC 2 cut(s) 62, 1003
Eco130I CCWWGG 2 cut(s) 683, 1201
Eco47I GGWCC 1 cut(s) 577
EcoRI GAATTC 1 cut(s) 633
EcoRII CCWGG 3 cut(s) 1062, 1209, 1254
EcoT14I CCWWGG 2 cut(s) 683, 1201
EcoT22I ATGCAT 1 cut(s) 280
ErhI CCWWGG 2 cut(s) 683, 1201
FaeI CATG 4 cut(s) 108, 749, 1371, 1410
FalI AAGNNNNNCTT 2 cut(s) 1332, 1364
FaqI GGGAC 2 cut(s) 220, 826
FatI CATG 4 cut(s) 104, 745, 1367, 1406
FauI CCCGC 1 cut(s) 581
FbaI TGATCA 1 cut(s) 518
FblI GTMKAC 1 cut(s) 32
Fnu4HI GCNGC 3 cut(s) 24, 1219, 1417
FokI GGATG 4 cut(s) 225, 460, 989, 1123
Fsp4HI GCNGC 3 cut(s) 24, 1219, 1417
FspBI CTAG 7 cut(s) 175, 313, 599, 698, 773, 895, 1202
GluI GCNGC 3 cut(s) 24, 1219, 1417
GsaI CCCAGC 1 cut(s) 207
HaeIII GGCC 3 cut(s) 179, 348, 682
HapII CCGG 2 cut(s) 120, 808
Hin1II CATG 4 cut(s) 108, 749, 1371, 1410
HincII GTYRAC 1 cut(s) 1119
HindII GTYRAC 1 cut(s) 1119
HindIII AAGCTT 2 cut(s) 872, 1246
HinfI GANTC 6 cut(s) 34, 265, 594, 733, 829, 935
HpaII CCGG 2 cut(s) 120, 808
HphI GGTGA 3 cut(s) 54, 603, 934
Hpy166II GTNNAC 3 cut(s) 33, 1034, 1119
Hpy188I TCNGA 4 cut(s) 273, 905, 963, 1289
Hpy188III TCNNGA 6 cut(s) 184, 313, 330, 370, 474, 1327
Hpy8I GTNNAC 3 cut(s) 33, 1034, 1119
HpyAV CCTTC 2 cut(s) 1141, 1188
HpyCH4III ACNGT 6 cut(s) 42, 861, 931, 970, 1101, 1128
HpyCH4IV ACGT 2 cut(s) 124, 953
HpyF10VI GCNNNNNNNGC 4 cut(s) 284, 688, 701, 1215
HpyF3I CTNAG 3 cut(s) 881, 960, 1362
HpySE526I ACGT 2 cut(s) 124, 953
Hsp92II CATG 4 cut(s) 108, 749, 1371, 1410
Ksp22I TGATCA 1 cut(s) 518
Kzo9I GATC 9 cut(s) 93, 130, 309, 360, 401, 518, 900, 1197, 1229
LmnI GCTCC 2 cut(s) 688, 1180
Lsp1109I GCAGC 2 cut(s) 10, 1230
LweI GCATC 4 cut(s) 438, 603, 691, 1403
MaeI CTAG 7 cut(s) 175, 313, 599, 698, 773, 895, 1202
MaeII ACGT 2 cut(s) 124, 953
MaeIII GTNAC 4 cut(s) 114, 136, 150, 990
MalI GATC 9 cut(s) 95, 132, 311, 362, 403, 520, 902, 1199, 1231
MbiI CCGCTC 1 cut(s) 512
MboI GATC 9 cut(s) 93, 130, 309, 360, 401, 518, 900, 1197, 1229
MboII GAAGA 7 cut(s) 15, 79, 260, 458, 811, 990, 1293
MflI RGATCY 4 cut(s) 93, 309, 900, 1197
MhlI GDGCHC 2 cut(s) 772, 1321
MluCI AATT 3 cut(s) 604, 633, 1259
MlyI GAGTC 5 cut(s) 28, 603, 742, 838, 944
MmeI TCCRAC 3 cut(s) 172, 185, 1312
MnlI CCTC 7 cut(s) 89, 235, 377, 506, 590, 1305, 1396
Mph1103I ATGCAT 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 3 cut(s) 887, 944, 1262
MslI CAYNNNNRTG 2 cut(s) 1372, 1411
MspA1I CMGCKG 1 cut(s) 653
MspI CCGG 2 cut(s) 120, 808
MspR9I CCNGG 4 cut(s) 120, 1064, 1211, 1256
Mva1269I GAATGC 1 cut(s) 280
MvaI CCWGG 3 cut(s) 1064, 1211, 1256
MvnI CGCG 1 cut(s) 307
MwoI GCNNNNNNNGC 4 cut(s) 284, 688, 701, 1215
NciI CCSGG 1 cut(s) 120
NdeII GATC 9 cut(s) 93, 130, 309, 360, 401, 518, 900, 1197, 1229
NlaIII CATG 4 cut(s) 108, 749, 1371, 1410
NlaIV GGNNCC 4 cut(s) 769, 1182, 1199, 1208
NmuCI GTSAC 2 cut(s) 114, 150
NsiI ATGCAT 1 cut(s) 280
PctI GAATGC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 71
PfeI GAWTC 1 cut(s) 265
PfoI TCCNGGA 1 cut(s) 1254
PkrI GCNGC 3 cut(s) 25, 1220, 1418
PleI GAGTC 5 cut(s) 28, 602, 741, 837, 943
PpsI GAGTC 5 cut(s) 28, 602, 741, 837, 943
Ppu21I YACGTR 1 cut(s) 954
PshBI ATTAAT 1 cut(s) 1262
Psp6I CCWGG 3 cut(s) 1062, 1209, 1254
PspFI CCCAGC 1 cut(s) 203
PspGI CCWGG 3 cut(s) 1062, 1209, 1254
PspN4I GGNNCC 4 cut(s) 769, 1182, 1199, 1208
PspPI GGNCC 1 cut(s) 577
PstI CTGCAG 3 cut(s) 63, 645, 1041
PsuI RGATCY 4 cut(s) 93, 309, 900, 1197
PvuII CAGCTG 1 cut(s) 653
RsaI GTAC 5 cut(s) 426, 743, 956, 1043, 1081
RsaNI GTAC 5 cut(s) 425, 742, 955, 1042, 1080
RseI CAYNNNNRTG 2 cut(s) 1372, 1411
SaqAI TTAA 3 cut(s) 887, 944, 1262
SatI GCNGC 3 cut(s) 24, 1219, 1417
Sau3AI GATC 9 cut(s) 93, 130, 309, 360, 401, 518, 900, 1197, 1229
Sau96I GGNCC 1 cut(s) 577
SchI GAGTC 5 cut(s) 28, 603, 742, 838, 944
ScrFI CCNGG 4 cut(s) 120, 1064, 1211, 1256
SduI GDGCHC 2 cut(s) 772, 1321
SfaNI GCATC 4 cut(s) 438, 603, 691, 1403
SfcI CTRYAG 4 cut(s) 59, 641, 966, 1037
SinI GGWCC 1 cut(s) 577
SmiMI CAYNNNNRTG 2 cut(s) 1372, 1411
SmlI CTYRAG 1 cut(s) 330
SmoI CTYRAG 1 cut(s) 330
Sse9I AATT 3 cut(s) 604, 633, 1259
SsiI CCGC 3 cut(s) 307, 510, 588
SspI AATATT 1 cut(s) 672
SspMI CTAG 7 cut(s) 175, 313, 599, 698, 773, 895, 1202
StyD4I CCNGG 4 cut(s) 118, 1062, 1209, 1254
StyI CCWWGG 2 cut(s) 683, 1201
TaaI ACNGT 6 cut(s) 42, 861, 931, 970, 1101, 1128
TaiI ACGT 2 cut(s) 127, 956
TasI AATT 3 cut(s) 604, 633, 1259
TatI WGTACW 2 cut(s) 1041, 1079
TfiI GAWTC 1 cut(s) 265
Tru1I TTAA 3 cut(s) 887, 944, 1262
Tru9I TTAA 3 cut(s) 887, 944, 1262
TscAI CASTG 3 cut(s) 63, 635, 1232
TseFI GTSAC 2 cut(s) 114, 150
TseI GCWGC 3 cut(s) 23, 1218, 1416
Tsp45I GTSAC 2 cut(s) 114, 150
TspDTI ATGAA 4 cut(s) 80, 458, 701, 1395
TspGWI ACGGA 1 cut(s) 1123
TspRI CASTG 3 cut(s) 63, 635, 1232
VpaK11BI GGWCC 1 cut(s) 577
VspI ATTAAT 1 cut(s) 1262
XapI RAATTY 1 cut(s) 633
XbaI TCTAGA 1 cut(s) 312
XcmI CCANNNNNNNNNTGG 1 cut(s) 533
XmaJI CCTAGG 1 cut(s) 1201
XmiI GTMKAC 1 cut(s) 32
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 7 cut(s) 175, 313, 599, 698, 773, 895, 1202
Zsp2I ATGCAT 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.