Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000986.1

Orthogroup ID

OG0010431

Physical Location & Seq

Genomic Coordinates Forward (+)

151182 .. 152537

Gene Structure 1356 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000986.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

atggagaacttggaaacgttggatttatcatggaataatctgtatggttccatcccttcatcacttagcaagctcacattcttgtcaaagtttagtgtggcaaataatcacttgcatggagtcattcccaatgaaggacagttcttgagctttcccaactcaagctttgaaggcaacccaggactttgtggggaaatattttctccatgtaatgccaagaatgcaggtcacaagcctgtaatgccatcaagttcaagcagtagatttggtcggaacagtatccttttagtaacactcagcataggagttgggattgcactgcttcttgcaattggtctacttagaatgtcaaggagggaagctgaaaatcaaattgatgattttgatgaggaacacagcaggcctcacaggttatcagaagcacttgcatcttcaaaattggtgctttttcagaatgcaagttgtagggatttcacagttgcagagttgttaaaatctacaaacaattttaaccaggccaacataattggttgtggtggttatgggctggtttacaaagccaacctacctaatggcacaaaagctgcaatcaagagactttctggggaatgtggacagatggagcgtgaatttcaagctgaagtggaagccctctcaagagctcagcacaagaaccttgtctctcttcagggctactgcaagcatggtaatgacaggttgttaatttactcttacatggagaatggaagcttggattattggctgcatgaaagtgttgatgggatttcacctctcaaatgggatgtaagactcaagatagctcaaggtgctgctcacggattggcttacttgcataagggctgtcagccaaatattgtccatcgagatataaaaacgagcaacattcttctagatgagaaatttgaagctcatctggctgattttggtctgtcaaggctacttcgtccttatgacacccatgtcacaacagatttagttggaactttgggctatattcctccggagtatagtcagacgttaactgcaacctgcaggggtgatgtttacagttttggtgttgttcttcttgaacttcttacgggcagaagacctgttgaagtgtgcaaagggaaaaattgcagagatttggtatcatggatgtttcagatgagacgtgagaagagagaggaggaaattatagattcatcaatctggaataaggatcatgagaagcagcttctggaggtacttgatgttgcctgtaaatgcctagatcccaatcccaggcagagaccctttatcgaagaagttgtatcatggcttgatggtattggattccagagtgagaaacaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001653 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009507 GO:0009536 GO:0009987 GO:0016020 GO:0023052 GO:0038023 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8 Pkinase

Protein Analysis

451

Amino Acids

50.43

Weight (kDa)

6.29

Isoelectric Point (pI)

42.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010431)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53890
fragaria_vesca	FvH4_3g19680 FvH4_3g19680
malus_domestica	MD11G1251700.v1.1
prunus_persica	Prupe.4G177400_v2.0.a1 Prupe.4G177400_v2.0.a1 Prupe.4G177400_v2.0.a1 Prupe.4G177400_v2.0.a1 Prupe.4G177400_v2.0.a1
pyrus_communis	pycom11g22310
rosa_chinensis	RchiOBHm_Chr5g0032901
rosa_laevigata	RLG00000033439
rosa_multiflora	Rmu_sc0000986.1_g000026 Rmu_sc0000986.1_g000027
rosa_roxburghii	Rroxscaffold_1G00047090
rosa_rugosa	Rorug05G0134600
rosa_samantha	Rh5AG227400 Rh5BG228700 Rh5CG256400 Rh5DG233500
rosa_wichuraiana	Rw5G020830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	980
Acc36I	ACCTGC	2 cut(s)	215, 1058
AccI	GTMKAC	1 cut(s)	337
AccIII	TCCGGA	1 cut(s)	1021
AclI	AACGTT	1 cut(s)	17
AclWI	GGATC	2 cut(s)	1230, 1268
AcsI	RAATTY	2 cut(s)	629, 920
AcuI	CTGAAG	2 cut(s)	660, 671
AfaI	GTAC	1 cut(s)	1248
AfiI	CCNNNNNNNGG	2 cut(s)	134, 1284
AgsI	TTSAA	7 cut(s)	170, 255, 435, 635, 926, 1091, 1118
AjiI	CACGTC	1 cut(s)	1175
AjnI	CCWGG	3 cut(s)	178, 513, 1283
AjuI	GAANNNNNNNTTGG	2 cut(s)	734, 766
Alw21I	GWGCWC	1 cut(s)	664
Alw26I	GTCTC	4 cut(s)	589, 685, 1165, 1285
AlwI	GGATC	2 cut(s)	1230, 1268
AlwNI	CAGNNNCTG	1 cut(s)	1240
Aor13HI	TCCGGA	1 cut(s)	1021
AoxI	GGCC	2 cut(s)	401, 516
ApeKI	GCWGC	4 cut(s)	584, 763, 830, 1234
ApoI	RAATTY	2 cut(s)	629, 920
AsuHPI	GGTGA	2 cut(s)	780, 1070
BanII	GRGCYC	1 cut(s)	664
BbsI	GAAGAC	1 cut(s)	1114
Bbv12I	GWGCWC	1 cut(s)	664
BbvI	GCAGC	4 cut(s)	571, 750, 817, 1246
BccI	CCATC	6 cut(s)	59, 253, 613, 773, 888, 1319
BciT130I	CCWGG	3 cut(s)	180, 515, 1285
BciVI	GTATCC	1 cut(s)	290
BcoDI	GTCTC	4 cut(s)	589, 685, 1165, 1285
BfaI	CTAG	2 cut(s)	911, 1271
BfmI	CTRYAG	1 cut(s)	1051
BfuAI	ACCTGC	2 cut(s)	215, 1058
BfuI	GTATCC	1 cut(s)	290
BisI	GCNGC	4 cut(s)	585, 764, 831, 1235
BlpI	GCTNAGC	1 cut(s)	663
BlsI	GCNGC	4 cut(s)	586, 765, 832, 1236
Bme1390I	CCNGG	3 cut(s)	180, 515, 1285
BmgBI	CACGTC	1 cut(s)	1175
BmiI	GGNNCC	1 cut(s)	49
BmrFI	CCNGG	3 cut(s)	180, 515, 1285
BmsI	GCATC	1 cut(s)	437
BpiI	GAAGAC	1 cut(s)	1114
BpmI	CTGGAG	1 cut(s)	1262
Bpu1102I	GCTNAGC	1 cut(s)	663
BpuEI	CTTGAG	5 cut(s)	145, 166, 640, 797, 807
BsaBI	GATNNNNATC	1 cut(s)	1278
BsaI	GGTCTC	1 cut(s)	1285
BsaJI	CCNNGG	2 cut(s)	178, 1283
BsaWI	WCCGGW	1 cut(s)	1021
Bsc4I	CCNNNNNNNGG	2 cut(s)	134, 1284
Bse8I	GATNNNNATC	1 cut(s)	1278
BseAI	TCCGGA	1 cut(s)	1021
BseBI	CCWGG	3 cut(s)	180, 515, 1285
BseDI	CCNNGG	2 cut(s)	178, 1283
BseGI	GGATG	3 cut(s)	51, 808, 1164
BseJI	GATNNNNATC	1 cut(s)	1278
BseLI	CCNNNNNNNGG	2 cut(s)	134, 1284
BseMII	CTCAG	2 cut(s)	310, 677
BseRI	GAGGAG	1 cut(s)	1202
BseXI	GCAGC	4 cut(s)	571, 750, 817, 1246
BshFI	GGCC	2 cut(s)	403, 518
BsiHKAI	GWGCWC	1 cut(s)	664
BsiSI	CCGG	1 cut(s)	1022
BslI	CCNNNNNNNGG	2 cut(s)	134, 1284
BsmAI	GTCTC	4 cut(s)	589, 685, 1165, 1285
BsmBI	CGTCTC	1 cut(s)	1165
BsmI	GAATGC	2 cut(s)	226, 460
BsnI	GGCC	2 cut(s)	403, 518
Bso31I	GGTCTC	1 cut(s)	1285
Bsp1286I	GDGCHC	1 cut(s)	664
Bsp13I	TCCGGA	1 cut(s)	1021
Bsp143I	GATC	2 cut(s)	1222, 1273
Bsp1720I	GCTNAGC	1 cut(s)	663
BspANI	GGCC	2 cut(s)	403, 518
BspCNI	CTCAG	2 cut(s)	309, 676
BspEI	TCCGGA	1 cut(s)	1021
BspHI	TCATGA	1 cut(s)	1225
BspLI	GGNNCC	1 cut(s)	49
BspMAI	CTGCAG	1 cut(s)	1055
BspMI	ACCTGC	2 cut(s)	215, 1058
BspPI	GGATC	2 cut(s)	1230, 1268
BspTNI	GGTCTC	1 cut(s)	1285
BssECI	CCNNGG	2 cut(s)	178, 1283
BssMI	GATC	2 cut(s)	1222, 1273
Bst2UI	CCWGG	3 cut(s)	180, 515, 1285
Bst4CI	ACNGT	4 cut(s)	141, 278, 478, 1070
Bst6I	CTCTTC	2 cut(s)	690, 1175
BstC8I	GCNNGC	3 cut(s)	71, 401, 701
BstDEI	CTNAG	4 cut(s)	65, 296, 341, 663
BstF5I	GGATG	3 cut(s)	51, 808, 1164
BstKTI	GATC	2 cut(s)	1225, 1276
BstMAI	GTCTC	4 cut(s)	589, 685, 1165, 1285
BstMBI	GATC	2 cut(s)	1222, 1273
BstMWI	GCNNNNNNNGC	5 cut(s)	171, 221, 241, 827, 935
BstNI	CCWGG	3 cut(s)	180, 515, 1285
BstSCI	CCNGG	3 cut(s)	178, 513, 1283
BstSFI	CTRYAG	1 cut(s)	1051
BstV1I	GCAGC	4 cut(s)	571, 750, 817, 1246
BstV2I	GAAGAC	1 cut(s)	1114
BstX2I	RGATCY	1 cut(s)	1273
BstYI	RGATCY	1 cut(s)	1273
BsuI	GTATCC	1 cut(s)	290
BsuRI	GGCC	2 cut(s)	403, 518
BtrI	CACGTC	1 cut(s)	1175
BtsCI	GGATG	3 cut(s)	51, 808, 1164
BtsI	GCAGTG	1 cut(s)	317
BtsIMutI	CAGTG	1 cut(s)	317
BveI	ACCTGC	2 cut(s)	215, 1058
Cac8I	GCNNGC	3 cut(s)	71, 401, 701
CaiI	CAGNNNCTG	1 cut(s)	1240
CciI	TCATGA	1 cut(s)	1225
Csp6I	GTAC	1 cut(s)	1247
CviQI	GTAC	1 cut(s)	1247
DdeI	CTNAG	4 cut(s)	65, 296, 341, 663
DpnI	GATC	2 cut(s)	1224, 1275
DpnII	GATC	2 cut(s)	1222, 1273
DrdI	GACNNNNNNGTC	1 cut(s)	980
DseDI	GACNNNNNNGTC	1 cut(s)	980
Eam1104I	CTCTTC	2 cut(s)	690, 1175
EarI	CTCTTC	2 cut(s)	690, 1175
Ecl136II	GAGCTC	1 cut(s)	662
Eco147I	AGGCCT	1 cut(s)	403
Eco24I	GRGCYC	1 cut(s)	664
Eco31I	GGTCTC	1 cut(s)	1285
Eco53kI	GAGCTC	1 cut(s)	662
Eco57I	CTGAAG	2 cut(s)	660, 671
EcoICRI	GAGCTC	1 cut(s)	662
EcoRII	CCWGG	3 cut(s)	178, 513, 1283
EcoT38I	GRGCYC	1 cut(s)	664
Esp3I	CGTCTC	1 cut(s)	1165
FblI	GTMKAC	1 cut(s)	337
Fnu4HI	GCNGC	4 cut(s)	585, 764, 831, 1235
FokI	GGATG	3 cut(s)	38, 815, 1171
FriOI	GRGCYC	1 cut(s)	664
Fsp4HI	GCNGC	4 cut(s)	585, 764, 831, 1235
FspBI	CTAG	2 cut(s)	911, 1271
GluI	GCNGC	4 cut(s)	585, 764, 831, 1235
GsuI	CTGGAG	1 cut(s)	1262
HaeIII	GGCC	2 cut(s)	403, 518
HapII	CCGG	1 cut(s)	1022
HincII	GTYRAC	1 cut(s)	1041
HindII	GTYRAC	1 cut(s)	1041
HindIII	AAGCTT	2 cut(s)	163, 748
HinfI	GANTC	4 cut(s)	120, 810, 1202, 1335
HpaI	GTTAAC	1 cut(s)	1041
HpaII	CCGG	1 cut(s)	1022
HphI	GGTGA	2 cut(s)	780, 1070
Hpy166II	GTNNAC	5 cut(s)	338, 553, 614, 1041, 1066
Hpy188I	TCNGA	5 cut(s)	273, 418, 453, 1035, 1167
Hpy8I	GTNNAC	5 cut(s)	338, 553, 614, 1041, 1066
HpyAV	CCTTC	3 cut(s)	66, 128, 164
HpyCH4III	ACNGT	4 cut(s)	141, 278, 478, 1070
HpyCH4IV	ACGT	3 cut(s)	17, 1037, 1174
HpyF10VI	GCNNNNNNNGC	5 cut(s)	171, 221, 241, 827, 935
HpyF3I	CTNAG	4 cut(s)	65, 296, 341, 663
HpySE526I	ACGT	3 cut(s)	17, 1037, 1174
Kpn2I	TCCGGA	1 cut(s)	1021
KspAI	GTTAAC	1 cut(s)	1041
Kzo9I	GATC	2 cut(s)	1222, 1273
LmnI	GCTCC	1 cut(s)	622
Lsp1109I	GCAGC	4 cut(s)	571, 750, 817, 1246
LweI	GCATC	1 cut(s)	437
MaeI	CTAG	2 cut(s)	911, 1271
MaeII	ACGT	3 cut(s)	17, 1037, 1174
MaeIII	GTNAC	3 cut(s)	227, 289, 982
MalI	GATC	2 cut(s)	1224, 1275
MboI	GATC	2 cut(s)	1222, 1273
MboII	GAAGA	7 cut(s)	423, 677, 899, 1076, 1119, 1192, 1316
MfeI	CAATTG	1 cut(s)	330
MflI	RGATCY	1 cut(s)	1273
MhlI	GDGCHC	1 cut(s)	664
MlyI	GAGTC	2 cut(s)	129, 804
MmeI	TCCRAC	2 cut(s)	251, 979
MnlI	CCTC	9 cut(s)	348, 382, 414, 662, 801, 1029, 1180, 1183, 1237
MroI	TCCGGA	1 cut(s)	1021
MseI	TTAA	4 cut(s)	491, 510, 722, 1040
MslI	CAYNNNNRTG	3 cut(s)	114, 708, 771
MspI	CCGG	1 cut(s)	1022
MspR9I	CCNGG	3 cut(s)	180, 515, 1285
MunI	CAATTG	1 cut(s)	330
Mva1269I	GAATGC	2 cut(s)	226, 460
MvaI	CCWGG	3 cut(s)	180, 515, 1285
MwoI	GCNNNNNNNGC	5 cut(s)	171, 221, 241, 827, 935
NdeII	GATC	2 cut(s)	1222, 1273
NlaIV	GGNNCC	1 cut(s)	49
NmuCI	GTSAC	2 cut(s)	227, 982
PagI	TCATGA	1 cut(s)	1225
PceI	AGGCCT	1 cut(s)	403
PctI	GAATGC	2 cut(s)	226, 460
PfeI	GAWTC	2 cut(s)	1202, 1335
PkrI	GCNGC	4 cut(s)	586, 765, 832, 1236
PleI	GAGTC	2 cut(s)	128, 804
PpsI	GAGTC	2 cut(s)	128, 804
Psp124BI	GAGCTC	1 cut(s)	664
Psp1406I	AACGTT	1 cut(s)	17
Psp6I	CCWGG	3 cut(s)	178, 513, 1283
PspGI	CCWGG	3 cut(s)	178, 513, 1283
PspN4I	GGNNCC	1 cut(s)	49
PstI	CTGCAG	1 cut(s)	1055
PstNI	CAGNNNCTG	1 cut(s)	1240
PsuI	RGATCY	1 cut(s)	1273
RsaI	GTAC	1 cut(s)	1248
RsaNI	GTAC	1 cut(s)	1247
RseI	CAYNNNNRTG	3 cut(s)	114, 708, 771
SacI	GAGCTC	1 cut(s)	664
SaqAI	TTAA	4 cut(s)	491, 510, 722, 1040
SatI	GCNGC	4 cut(s)	585, 764, 831, 1235
Sau3AI	GATC	2 cut(s)	1222, 1273
SbfI	CCTGCAGG	1 cut(s)	1055
SchI	GAGTC	2 cut(s)	129, 804
ScrFI	CCNGG	3 cut(s)	180, 515, 1285
SdaI	CCTGCAGG	1 cut(s)	1055
SduI	GDGCHC	1 cut(s)	664
SfaNI	GCATC	1 cut(s)	437
SfcI	CTRYAG	1 cut(s)	1051
SmiMI	CAYNNNNRTG	3 cut(s)	114, 708, 771
SmlI	CTYRAG	5 cut(s)	145, 160, 655, 812, 822
SmoI	CTYRAG	5 cut(s)	145, 160, 655, 812, 822
Sse8387I	CCTGCAGG	1 cut(s)	1055
SseBI	AGGCCT	1 cut(s)	403
SspI	AATATT	2 cut(s)	198, 874
SspMI	CTAG	2 cut(s)	911, 1271
SstI	GAGCTC	1 cut(s)	664
StuI	AGGCCT	1 cut(s)	403
StyD4I	CCNGG	3 cut(s)	178, 513, 1283
TaaI	ACNGT	4 cut(s)	141, 278, 478, 1070
TaiI	ACGT	3 cut(s)	20, 1040, 1177
TaqI	TCGA	2 cut(s)	883, 1302
TfiI	GAWTC	2 cut(s)	1202, 1335
Tru1I	TTAA	4 cut(s)	491, 510, 722, 1040
Tru9I	TTAA	4 cut(s)	491, 510, 722, 1040
TscAI	CASTG	1 cut(s)	324
TseFI	GTSAC	2 cut(s)	227, 982
TseI	GCWGC	4 cut(s)	584, 763, 830, 1234
Tsp45I	GTSAC	2 cut(s)	227, 982
TspDTI	ATGAA	4 cut(s)	48, 147, 783, 1194
TspGWI	ACGGA	1 cut(s)	852
TspRI	CASTG	1 cut(s)	324
XapI	RAATTY	2 cut(s)	629, 920
XbaI	TCTAGA	1 cut(s)	910
XmiI	GTMKAC	1 cut(s)	337
XspI	CTAG	2 cut(s)	911, 1271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.