Rorug05G0134600
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0010431
Physical Location & Seq
Reverse (-)
12044206 .. 12045654
1449 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0134600.1

Sequence Viewer

Length: 1449 bp
ATGTGGCTTCTTCATCCTTCTTTTCAAGACCTTGTAGCTAATTGTTGGAGATATACTACACCTGCTGGTTGCCCAATGTACGTCACTCTTCAAAATTGGAATTACAGTGTCTTTGGGAATGTTCATAGATTTTTGGAAGGAGCTCGAGCCAAGCTAGCTGATATTCAACAAACTATGTATTCAAATGGGTTTTCTGAACATCTTTTTGCAGCTGAAGTTGAGGCCAAAACGGCAATGCTTGATGCAACTCGGCGTCAAGAAGCATTTTGGAGGGATAAGTCCAAGGCTAAGTGGCTTACTGATGGGGACAAATGCACCTCTTTCTTTCATACCTATGCTAGAAACAAGACTGTCAGAGCTCGCATAAATTGTCTTCAAATTGGTCATTCTCTTTTAACTGACTTGGAAGACATATCCAATCATGTTATAACCTTTTACCAATCATTATATGGCCCAGGTAAGCCTCCTAGGGGAATTGATGATATCTGTAATATTATTCCTAACTTAATTACAGGTGAAGAAAATGTTATGCTTACAGCTATGTCATCTCCAAAAGAGATTAAACGTACTGTTTTCTCTATAAATCCCTCCAGTTCCCCTGGTCCTGATGGGTTTCCAGGTGATTTCTGTCATAATTGTTGGGACATTGTTGGAGCAGATATTGTAGCTTTTATGCAATATTTCTTTCAGCATAACCAGTTGTACCCTAATGACAACTCTAATTTTATTGTGCTTCTCCCAAAAGTTGAAGGTGCTGACTTAATTTCCCAATTTCGACCAATTGCCTTAGCAAATTTTCTTTCCAAGATTATACCAAAATTTTTGGCTATTAGTCTGGGCTCCATTACCTCACATATTATCTCAGCTAATCAATCTGCTTTTCTGCTAGGACGCCGTATTTCTAATTGTATTGGCCTGGTCTCTGAGGGTTTCAATTTATTGGACAGAAAAATTAGAGGTGGTAATGTGGGTATAAAGGTTGATATCGCTAAAGCTTTTGACACCCTAAATTGGCAGTTCTTATTTCAGGTTCTCCATCAATTTGGTTTTTGGCCAGACTTCATGGATTATGTCAATACAATGCTTGGTTCATCAAGATTGTCAGTTATGATTAATGGTTCTCTGAAAGGTTATTTTCTTGTGCTAGAAGAGTACGTAAGGCAAGGGGACCCTTTATCCCCACTTTTATTCTGTCTCGCTGAGGAGGCGCTGTCGAGCAGAGGACTTTCCTCTCTTTTTGCTTCTCGGCATGTGAAACCTATATCCCTTTCGCGAGGTTGCTCTCTCACTCATGTCTTATATGAAGATGAGCTGTTTATATTTTTCCATGGGGATGTCTCTTCTCTCACTCGTCTGCAATCTTTTTTAGAGAGTTATGGTCAGGCTTCTGGGCAGCTGGTAAATGAAGAAAAGAGTACTTTTCATTTGGGAGATTCCTATGCTCATTGA

Protein Analysis

482

Amino Acids

54.22

Weight (kDa)

6.43

Isoelectric Point (pI)

35.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_1 PF00078 255 - 475 1.1e-20 Reverse transcriptase (RNA-dependent DNA polymerase)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 428
AarI CACCTGC 1 cut(s) 70
Acc36I ACCTGC 1 cut(s) 70
AccII CGCG 1 cut(s) 1273
AcoI YGGCCR 1 cut(s) 1052
AcsI RAATTY 2 cut(s) 793, 818
AcuI CTGAAG 1 cut(s) 234
AcyI GRCGYC 2 cut(s) 253, 892
AfaI GTAC 5 cut(s) 80, 568, 704, 1154, 1417
AfiI CCNNNNNNNGG 2 cut(s) 470, 1011
AgsI TTSAA 7 cut(s) 26, 92, 167, 183, 377, 749, 934
AjnI CCWGG 4 cut(s) 454, 598, 616, 915
Alw21I GWGCWC 2 cut(s) 145, 361
Alw26I GTCTC 3 cut(s) 925, 1199, 1342
Ama87I CYCGRG 1 cut(s) 144
AoxI GGCC 4 cut(s) 222, 451, 913, 1052
ApeKI GCWGC 2 cut(s) 209, 1393
ApoI RAATTY 2 cut(s) 793, 818
AseI ATTAAT 1 cut(s) 1113
AspA2I CCTAGG 1 cut(s) 467
AspLEI GCGC 1 cut(s) 1210
AspS9I GGNCC 3 cut(s) 452, 602, 1168
AsuHPI GGTGA 2 cut(s) 527, 632
AsuNHI GCTAGC 1 cut(s) 154
AvaI CYCGRG 1 cut(s) 144
AvaII GGWCC 2 cut(s) 602, 1168
AvrII CCTAGG 1 cut(s) 467
BalI TGGCCA 1 cut(s) 1054
BanII GRGCYC 3 cut(s) 145, 361, 842
BbsI GAAGAC 2 cut(s) 365, 414
Bbv12I GWGCWC 2 cut(s) 145, 361
BbvCI CCTCAGC 1 cut(s) 1200
BbvI GCAGC 2 cut(s) 221, 1405
BccI CCATC 3 cut(s) 296, 602, 1044
BceAI ACGGC 2 cut(s) 246, 879
BciT130I CCWGG 4 cut(s) 456, 600, 618, 917
BcoDI GTCTC 3 cut(s) 925, 1199, 1342
BfaI CTAG 5 cut(s) 155, 339, 468, 887, 1145
BfoI RGCGCY 1 cut(s) 1211
BfuAI ACCTGC 1 cut(s) 70
BglI GCCNNNNNGGC 1 cut(s) 230
BisI GCNGC 2 cut(s) 210, 1394
BlnI CCTAGG 1 cut(s) 467
BlsI GCNGC 2 cut(s) 211, 1395
BmcAI AGTACT 1 cut(s) 1417
Bme1390I CCNGG 4 cut(s) 456, 600, 618, 917
Bme18I GGWCC 2 cut(s) 602, 1168
BmeT110I CYCGRG 1 cut(s) 144
BmgT120I GGNCC 3 cut(s) 452, 602, 1168
BmiI GGNNCC 3 cut(s) 841, 1169, 1170
BmrFI CCNGG 4 cut(s) 456, 600, 618, 917
BmsI GCATC 1 cut(s) 232
BmtI GCTAGC 1 cut(s) 158
BpiI GAAGAC 2 cut(s) 365, 414
BpmI CTGGAG 1 cut(s) 574
Bpu10I CCTNAGC 2 cut(s) 787, 1200
BsaAI YACGTR 1 cut(s) 1156
BsaHI GRCGYC 2 cut(s) 253, 892
BsaI GGTCTC 1 cut(s) 925
BsaJI CCNNGG 5 cut(s) 282, 454, 467, 598, 1327
BsaXI ACNNNNNCTCC 2 cut(s) 1196, 1226
Bsc4I CCNNNNNNNGG 2 cut(s) 470, 1011
Bse1I ACTGG 2 cut(s) 591, 697
Bse3DI GCAATG 1 cut(s) 240
BseBI CCWGG 4 cut(s) 456, 600, 618, 917
BseDI CCNNGG 5 cut(s) 282, 454, 467, 598, 1327
BseGI GGATG 2 cut(s) 13, 1339
BseLI CCNNNNNNNGG 2 cut(s) 470, 1011
BseMI GCAATG 1 cut(s) 240
BseMII CTCAG 3 cut(s) 876, 915, 1191
BseNI ACTGG 2 cut(s) 591, 697
BseRI GAGGAG 1 cut(s) 1217
BseXI GCAGC 2 cut(s) 221, 1405
Bsh1236I CGCG 1 cut(s) 1273
BshFI GGCC 4 cut(s) 224, 453, 915, 1054
BsiHKAI GWGCWC 2 cut(s) 145, 361
BsiHKCI CYCGRG 1 cut(s) 144
BslFI GGGAC 3 cut(s) 320, 656, 1181
BslI CCNNNNNNNGG 2 cut(s) 470, 1011
BsmAI GTCTC 3 cut(s) 925, 1199, 1342
BsmFI GGGAC 3 cut(s) 320, 656, 1181
BsnI GGCC 4 cut(s) 224, 453, 915, 1054
Bso31I GGTCTC 1 cut(s) 925
BsoBI CYCGRG 1 cut(s) 144
Bsp1286I GDGCHC 3 cut(s) 145, 361, 842
Bsp19I CCATGG 1 cut(s) 1327
Bsp68I TCGCGA 1 cut(s) 1273
BspANI GGCC 4 cut(s) 224, 453, 915, 1054
BspCNI CTCAG 3 cut(s) 875, 916, 1192
BspFNI CGCG 1 cut(s) 1273
BspLI GGNNCC 3 cut(s) 841, 1169, 1170
BspMI ACCTGC 1 cut(s) 70
BspOI GCTAGC 1 cut(s) 158
BspTNI GGTCTC 1 cut(s) 925
BsrDI GCAATG 1 cut(s) 240
BsrI ACTGG 2 cut(s) 591, 697
BssECI CCNNGG 5 cut(s) 282, 454, 467, 598, 1327
BssNI GRCGYC 2 cut(s) 253, 892
BssT1I CCWWGG 3 cut(s) 282, 467, 1327
Bst2UI CCWGG 4 cut(s) 456, 600, 618, 917
Bst4CI ACNGT 3 cut(s) 107, 352, 571
Bst6I CTCTTC 3 cut(s) 93, 1143, 1345
BstACI GRCGYC 2 cut(s) 253, 892
BstBAI YACGTR 1 cut(s) 1156
BstC8I GCNNGC 2 cut(s) 156, 361
BstDEI CTNAG 5 cut(s) 288, 787, 862, 924, 1200
BstDSI CCRYGG 1 cut(s) 1327
BstF5I GGATG 2 cut(s) 13, 1339
BstFNI CGCG 1 cut(s) 1273
BstH2I RGCGCY 1 cut(s) 1211
BstHHI GCGC 1 cut(s) 1210
BstMAI GTCTC 3 cut(s) 925, 1199, 1342
BstMWI GCNNNNNNNGC 3 cut(s) 155, 230, 1205
BstNI CCWGG 4 cut(s) 456, 600, 618, 917
BstNSI RCATGY 1 cut(s) 1253
BstSCI CCNGG 4 cut(s) 454, 598, 616, 915
BstSNI TACGTA 1 cut(s) 1156
BstUI CGCG 1 cut(s) 1273
BstV1I GCAGC 2 cut(s) 221, 1405
BstV2I GAAGAC 2 cut(s) 365, 414
BstXI CCANNNNNNTGG 1 cut(s) 1043
BsuRI GGCC 4 cut(s) 224, 453, 915, 1054
BtgI CCRYGG 1 cut(s) 1327
BtsCI GGATG 2 cut(s) 13, 1339
BtsIMutI CAGTG 1 cut(s) 112
BtuMI TCGCGA 1 cut(s) 1273
BveI ACCTGC 1 cut(s) 70
Cac8I GCNNGC 2 cut(s) 156, 361
CfoI GCGC 1 cut(s) 1210
Cfr13I GGNCC 3 cut(s) 452, 602, 1168
CseI GACGC 2 cut(s) 242, 900
Csp6I GTAC 5 cut(s) 79, 567, 703, 1153, 1416
CviAII CATG 5 cut(s) 422, 1063, 1250, 1292, 1328
CviQI GTAC 5 cut(s) 79, 567, 703, 1153, 1416
DdeI CTNAG 5 cut(s) 288, 787, 862, 924, 1200
EaeI YGGCCR 1 cut(s) 1052
Eam1104I CTCTTC 3 cut(s) 93, 1143, 1345
EarI CTCTTC 3 cut(s) 93, 1143, 1345
Ecl136II GAGCTC 2 cut(s) 143, 359
Eco105I TACGTA 1 cut(s) 1156
Eco130I CCWWGG 3 cut(s) 282, 467, 1327
Eco24I GRGCYC 3 cut(s) 145, 361, 842
Eco31I GGTCTC 1 cut(s) 925
Eco32I GATATC 2 cut(s) 484, 985
Eco47I GGWCC 2 cut(s) 602, 1168
Eco53kI GAGCTC 2 cut(s) 143, 359
Eco57I CTGAAG 1 cut(s) 234
Eco88I CYCGRG 1 cut(s) 144
EcoICRI GAGCTC 2 cut(s) 143, 359
EcoO109I RGGNCCY 1 cut(s) 1168
EcoRII CCWGG 4 cut(s) 454, 598, 616, 915
EcoRV GATATC 2 cut(s) 484, 985
EcoT14I CCWWGG 3 cut(s) 282, 467, 1327
EcoT38I GRGCYC 3 cut(s) 145, 361, 842
ErhI CCWWGG 3 cut(s) 282, 467, 1327
FaeI CATG 5 cut(s) 425, 1066, 1253, 1295, 1331
FaqI GGGAC 3 cut(s) 320, 656, 1181
FatI CATG 5 cut(s) 421, 1062, 1249, 1291, 1327
Fnu4HI GCNGC 2 cut(s) 210, 1394
FokI GGATG 1 cut(s) 1346
FriOI GRGCYC 3 cut(s) 145, 361, 842
Fsp4HI GCNGC 2 cut(s) 210, 1394
FspBI CTAG 5 cut(s) 155, 339, 468, 887, 1145
GlaI GCGC 1 cut(s) 1209
GluI GCNGC 2 cut(s) 210, 1394
GsuI CTGGAG 1 cut(s) 574
HaeII RGCGCY 1 cut(s) 1211
HaeIII GGCC 4 cut(s) 224, 453, 915, 1054
HgaI GACGC 2 cut(s) 242, 900
HhaI GCGC 1 cut(s) 1210
Hin1I GRCGYC 2 cut(s) 253, 892
Hin1II CATG 5 cut(s) 425, 1066, 1253, 1295, 1331
Hin6I GCGC 1 cut(s) 1208
HinP1I GCGC 1 cut(s) 1208
HindIII AAGCTT 1 cut(s) 993
HinfI GANTC 1 cut(s) 1433
HphI GGTGA 2 cut(s) 527, 632
Hpy188I TCNGA 4 cut(s) 196, 356, 925, 1125
Hpy188III TCNNGA 5 cut(s) 26, 257, 605, 1095, 1272
HpyAV CCTTC 3 cut(s) 27, 131, 743
HpyCH4III ACNGT 3 cut(s) 107, 352, 571
HpyCH4IV ACGT 3 cut(s) 81, 565, 1155
HpyCH4V TGCA 5 cut(s) 209, 245, 315, 676, 1357
HpyF10VI GCNNNNNNNGC 3 cut(s) 155, 230, 1205
HpyF3I CTNAG 5 cut(s) 288, 787, 862, 924, 1200
HpySE526I ACGT 3 cut(s) 81, 565, 1155
Hsp92I GRCGYC 2 cut(s) 253, 892
Hsp92II CATG 5 cut(s) 425, 1066, 1253, 1295, 1331
HspAI GCGC 1 cut(s) 1208
KflI GGGWCCC 1 cut(s) 1168
LmnI GCTCC 3 cut(s) 140, 653, 845
Lsp1109I GCAGC 2 cut(s) 221, 1405
LweI GCATC 1 cut(s) 232
MaeI CTAG 5 cut(s) 155, 339, 468, 887, 1145
MaeII ACGT 3 cut(s) 81, 565, 1155
MaeIII GTNAC 1 cut(s) 82
MboII GAAGA 8 cut(s) 80, 365, 419, 530, 1160, 1316, 1332, 1418
MfeI CAATTG 1 cut(s) 780
MhlI GDGCHC 3 cut(s) 145, 361, 842
MlsI TGGCCA 1 cut(s) 1054
MluNI TGGCCA 1 cut(s) 1054
MmeI TCCRAC 2 cut(s) 26, 631
Mox20I TGGCCA 1 cut(s) 1054
MscI TGGCCA 1 cut(s) 1054
MseI TTAA 5 cut(s) 395, 506, 561, 761, 1113
MslI CAYNNNNRTG 2 cut(s) 333, 1332
Msp20I TGGCCA 1 cut(s) 1054
MspA1I CMGCKG 2 cut(s) 212, 1396
MspR9I CCNGG 4 cut(s) 456, 600, 618, 917
MunI CAATTG 1 cut(s) 780
MvaI CCWGG 4 cut(s) 456, 600, 618, 917
MvnI CGCG 1 cut(s) 1273
MwoI GCNNNNNNNGC 3 cut(s) 155, 230, 1205
NcoI CCATGG 1 cut(s) 1327
NheI GCTAGC 1 cut(s) 154
NlaIII CATG 5 cut(s) 425, 1066, 1253, 1295, 1331
NlaIV GGNNCC 3 cut(s) 841, 1169, 1170
NmeAIII GCCGAG 2 cut(s) 229, 1225
NmuCI GTSAC 1 cut(s) 82
NruI TCGCGA 1 cut(s) 1273
NspI RCATGY 1 cut(s) 1253
PaeR7I CTCGAG 1 cut(s) 144
PaqCI CACCTGC 1 cut(s) 70
PfeI GAWTC 1 cut(s) 1433
PkrI GCNGC 2 cut(s) 211, 1395
Ppu21I YACGTR 1 cut(s) 1156
PpuMI RGGWCCY 1 cut(s) 1168
PshBI ATTAAT 1 cut(s) 1113
PsiI TTATAA 1 cut(s) 428
Psp124BI GAGCTC 2 cut(s) 145, 361
Psp5II RGGWCCY 1 cut(s) 1168
Psp6I CCWGG 4 cut(s) 454, 598, 616, 915
PspGI CCWGG 4 cut(s) 454, 598, 616, 915
PspN4I GGNNCC 3 cut(s) 841, 1169, 1170
PspPI GGNCC 3 cut(s) 452, 602, 1168
PspPPI RGGWCCY 1 cut(s) 1168
PspXI VCTCGAGB 1 cut(s) 144
PvuII CAGCTG 2 cut(s) 212, 1396
RruI TCGCGA 1 cut(s) 1273
RsaI GTAC 5 cut(s) 80, 568, 704, 1154, 1417
RsaNI GTAC 5 cut(s) 79, 567, 703, 1153, 1416
RseI CAYNNNNRTG 2 cut(s) 333, 1332
SacI GAGCTC 2 cut(s) 145, 361
SaqAI TTAA 5 cut(s) 395, 506, 561, 761, 1113
SatI GCNGC 2 cut(s) 210, 1394
Sau96I GGNCC 3 cut(s) 452, 602, 1168
ScaI AGTACT 1 cut(s) 1417
ScrFI CCNGG 4 cut(s) 456, 600, 618, 917
SduI GDGCHC 3 cut(s) 145, 361, 842
SfaNI GCATC 1 cut(s) 232
Sfr274I CTCGAG 1 cut(s) 144
SinI GGWCC 2 cut(s) 602, 1168
SlaI CTCGAG 1 cut(s) 144
SmiMI CAYNNNNRTG 2 cut(s) 333, 1332
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
SnaBI TACGTA 1 cut(s) 1156
SspI AATATT 2 cut(s) 493, 680
SspMI CTAG 5 cut(s) 155, 339, 468, 887, 1145
SstI GAGCTC 2 cut(s) 145, 361
StyD4I CCNGG 4 cut(s) 454, 598, 616, 915
StyI CCWWGG 3 cut(s) 282, 467, 1327
TaaI ACNGT 3 cut(s) 107, 352, 571
TaiI ACGT 3 cut(s) 84, 568, 1158
TaqI TCGA 3 cut(s) 145, 775, 1214
TatI WGTACW 1 cut(s) 1415
TfiI GAWTC 1 cut(s) 1433
Tru1I TTAA 5 cut(s) 395, 506, 561, 761, 1113
Tru9I TTAA 5 cut(s) 395, 506, 561, 761, 1113
TscAI CASTG 1 cut(s) 112
TseFI GTSAC 1 cut(s) 82
TseI GCWGC 2 cut(s) 209, 1393
Tsp45I GTSAC 1 cut(s) 82
TspDTI ATGAA 7 cut(s) 113, 317, 1051, 1080, 1317, 1412, 1419
TspRI CASTG 1 cut(s) 112
VpaK11BI GGWCC 2 cut(s) 602, 1168
VspI ATTAAT 1 cut(s) 1113
XapI RAATTY 2 cut(s) 793, 818
XceI RCATGY 1 cut(s) 1253
XcmI CCANNNNNNNNNTGG 1 cut(s) 446
XhoI CTCGAG 1 cut(s) 144
XmaJI CCTAGG 1 cut(s) 467
XspI CTAG 5 cut(s) 155, 339, 468, 887, 1145
ZrmI AGTACT 1 cut(s) 1417
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.