Rroxscaffold_1G00047090
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
Physical Location & Seq
Forward (+)
66621192 .. 66625672
4481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00047090.1

Sequence Viewer

Length: 1818 bp
ATGGTTTTAGCACTTGGAAATTCTGCTCTTAAAGGCCAAATTCCAGCTTGGTTATTGAGTTGCAGGAAGTTGGAAGTCCTTGATTTGTCTTGGAATCACTTGGATGGCAATATCCCTCCATGGATTGGTCAGATGGAGAACTTGTTTTATGTGGACTTTTCAAATAATTCTCTCTCTGGAGAAATCCCAAAAGGTCTAACAGAGCTGAAAAGCCTTATTTCTACAAATAGCAGTCGATCATATCTTACTGCCTCTGCTGGTATCCCGCTATTTGTGAAGCGAAATAAGAGTGCTAATGGACTGCAATACAACCAGGCCTCGAGTTTTCCACCTTCAATATACTTGAGCAATAATAGAATTAATGGATCAATCTGTCCAGAAGTCGGACGACTAAAACAGCTCCATGTTTTGGATTGGAGCAGGAACAACATTACTGGGATCATTCCTAGCTCAATCTCAGAGATGGAGAACTTGGAAACGTTGGATTTATCATGGAATAATCTGTATGGTTCCATCCCTTCATCACTTAGCAAGCTCACATTCTTGTCAAAGTTTAGTGTGGCACATAATCACTTGCATGGAGTCATTCCCAATGAAGGACAGTTCTTGAGCTTTCCCAACTCAAGCTTTGAAGGCAACCCAGGACTTTGTGGGGAAATATTTTCTCCATGTAATGCCAAGAATGCAGGTGGCAAGCCTGTAATGCCATCAAGTTCAAGCAGTAGATTTGGGCGGAACAGTATCCTTTTAGTAACACTCAGCATAGGAGTTGGGATTGCACTGCTTCTTGCAATTGGTCTACTTAGAATGTCAAGGAGGGAAGCTGAAAATCAAATTGATGATTTTGATGAGGAACACAGCAGGCCTCACAGGTTATCAGAAGCACTTGCATCTTCAAAATTGGTGCTTTTTCAGAATGCAAGTTGTAGGGATTTCACAGTTGCAGAGTTGTTAAAATCTACAAACAATTTTAACCAGGCCAACATAATTGGTTGTGGTGGTTATGGGCTGGTTTACAAGGCCAACCTACCTAATGGCACAAAAGCTGCAATCAAGAGACTTTCTGGGGAATGTGGACAGATGGAGCGTGAATTTCAAGCTGAAGTGGAAGCCCTCTCAAGAGCTCAGCACAAGAACCTTGTCTCTCTTCAGGGCTACTGCAAGCATGGTAATGACAGGTTGTTAATTTACTCTTACATGGAGAATGGAAGCTTGGATTATTGGCTGCATGAAAGTGTTGATGGGATTTCACCTCTCAAATGGGATGTAAGACTCAAGATAGCTCAAGGTGCTGCTCACGGATTGGCTTACTTGCATAAGGGCTGTCAGCCAAATATTGTCCATCGAGATATAAAAACGAGCAACATTCTTCTAGATGAGAAATTTGAAGCTCATCTGGCTGATTTTGGTCTCTCAAGGCTACTTCGTCCTTACGACACCCATGTCACAACAGATTTGGTTGGAACTTTGGGCTATATTCCTCCGGAGTATAGTCAGACGTTAACTGCAACCTGCAGGGGCGATGTTTACAGTTTTGGTGTTGTTCTTCTTGAACTTCTTACGGGCAGAAGACCTGTTGAAGTGTGCAAAGGGAAAAATTGCAGAGATTTGGTATCATGGATGTTTCAGATGAGACGTGAGAAGAGAGAGGAGGAAATTATCGATTCATCAATCTGGAATAAGGATCATGAGAAGCAGCTTCTGGAGGTACTTGATGTTGCCTGTAAATGCCTAGATCCCAATCCCAGGCAGAGACCCTTTATCGAAGAAGTTGTATCATGGCTTGATGGTATTGGATTGCAGAGTGAGAGACAATGA

Protein Analysis

605

Amino Acids

67.28

Weight (kDa)

6.77

Isoelectric Point (pI)

41.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 112 - 168 2.2e-08 Leucine rich repeat
Pkinase PF00069 325 - 592 7.1e-43 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 327 - 593 1.2e-41 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 677
AasI GACNNNNNNGTC 1 cut(s) 1442
Acc36I ACCTGC 2 cut(s) 677, 1520
AccB7I CCANNNNNTGG 2 cut(s) 125, 409
AccI GTMKAC 1 cut(s) 799
AccIII TCCGGA 1 cut(s) 1483
AciI CCGC 2 cut(s) 266, 733
AclI AACGTT 1 cut(s) 479
AclWI GGATC 4 cut(s) 373, 446, 1692, 1730
AcsI RAATTY 4 cut(s) 19, 39, 1091, 1382
AcuI CTGAAG 2 cut(s) 1122, 1133
AfaI GTAC 1 cut(s) 1710
AfiI CCNNNNNNNGG 5 cut(s) 125, 383, 409, 596, 1746
AgsI TTSAA 9 cut(s) 162, 336, 632, 717, 897, 1097, 1388, 1553, 1580
AjiI CACGTC 1 cut(s) 1637
AjnI CCWGG 4 cut(s) 312, 640, 975, 1745
AjuI GAANNNNNNNTTGG 2 cut(s) 1196, 1228
Alw21I GWGCWC 1 cut(s) 1126
Alw26I GTCTC 6 cut(s) 1051, 1147, 1415, 1627, 1747, 1804
AlwI GGATC 4 cut(s) 373, 446, 1692, 1730
AlwNI CAGNNNCTG 1 cut(s) 1702
Ama87I CYCGRG 1 cut(s) 319
Aor13HI TCCGGA 1 cut(s) 1483
AoxI GGCC 5 cut(s) 34, 315, 863, 978, 1020
ApeKI GCWGC 4 cut(s) 1046, 1225, 1292, 1696
ApoI RAATTY 4 cut(s) 19, 39, 1091, 1382
AseI ATTAAT 1 cut(s) 360
AsuHPI GGTGA 1 cut(s) 1242
AvaI CYCGRG 1 cut(s) 319
BanII GRGCYC 1 cut(s) 1126
BbsI GAAGAC 1 cut(s) 1576
Bbv12I GWGCWC 1 cut(s) 1126
BbvI GCAGC 4 cut(s) 1033, 1212, 1279, 1708
BccI CCATC 9 cut(s) 98, 127, 457, 521, 715, 1075, 1235, 1350, 1781
BciT130I CCWGG 4 cut(s) 314, 642, 977, 1747
BciVI GTATCC 2 cut(s) 272, 752
BcoDI GTCTC 6 cut(s) 1051, 1147, 1415, 1627, 1747, 1804
BfaI CTAG 3 cut(s) 447, 1373, 1733
BfmI CTRYAG 1 cut(s) 1513
BfuAI ACCTGC 2 cut(s) 677, 1520
BfuI GTATCC 2 cut(s) 272, 752
BisI GCNGC 4 cut(s) 1047, 1226, 1293, 1697
BlpI GCTNAGC 1 cut(s) 1125
BlsI GCNGC 4 cut(s) 1048, 1227, 1294, 1698
Bme1390I CCNGG 4 cut(s) 314, 642, 977, 1747
BmeT110I CYCGRG 1 cut(s) 319
BmgBI CACGTC 1 cut(s) 1637
BmiI GGNNCC 1 cut(s) 511
BmrFI CCNGG 4 cut(s) 314, 642, 977, 1747
BmrI ACTGGG 1 cut(s) 444
BmsI GCATC 1 cut(s) 899
BmuI ACTGGG 1 cut(s) 444
BpiI GAAGAC 1 cut(s) 1576
BpmI CTGGAG 2 cut(s) 198, 1724
Bpu1102I GCTNAGC 1 cut(s) 1125
BpuEI CTTGAG 7 cut(s) 364, 607, 628, 1102, 1259, 1269, 1399
Bsa29I ATCGAT 1 cut(s) 1662
BsaBI GATNNNNATC 1 cut(s) 1740
BsaI GGTCTC 2 cut(s) 1415, 1747
BsaJI CCNNGG 3 cut(s) 119, 640, 1745
BsaWI WCCGGW 1 cut(s) 1483
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 5 cut(s) 125, 383, 409, 596, 1746
Bse1I ACTGG 1 cut(s) 439
Bse8I GATNNNNATC 1 cut(s) 1740
BseAI TCCGGA 1 cut(s) 1483
BseBI CCWGG 4 cut(s) 314, 642, 977, 1747
BseCI ATCGAT 1 cut(s) 1662
BseDI CCNNGG 3 cut(s) 119, 640, 1745
BseGI GGATG 4 cut(s) 109, 513, 1270, 1626
BseJI GATNNNNATC 1 cut(s) 1740
BseLI CCNNNNNNNGG 5 cut(s) 125, 383, 409, 596, 1746
BseMII CTCAG 3 cut(s) 471, 772, 1139
BseNI ACTGG 1 cut(s) 439
BseRI GAGGAG 1 cut(s) 1664
BseXI GCAGC 4 cut(s) 1033, 1212, 1279, 1708
BshFI GGCC 5 cut(s) 36, 317, 865, 980, 1022
BshVI ATCGAT 1 cut(s) 1662
BsiHKAI GWGCWC 1 cut(s) 1126
BsiHKCI CYCGRG 1 cut(s) 319
BsiSI CCGG 1 cut(s) 1484
BslI CCNNNNNNNGG 5 cut(s) 125, 383, 409, 596, 1746
BsmAI GTCTC 6 cut(s) 1051, 1147, 1415, 1627, 1747, 1804
BsmBI CGTCTC 1 cut(s) 1627
BsmI GAATGC 2 cut(s) 688, 922
BsnI GGCC 5 cut(s) 36, 317, 865, 980, 1022
Bso31I GGTCTC 2 cut(s) 1415, 1747
BsoBI CYCGRG 1 cut(s) 319
Bsp1286I GDGCHC 1 cut(s) 1126
Bsp13I TCCGGA 1 cut(s) 1483
Bsp143I GATC 5 cut(s) 236, 365, 438, 1684, 1735
Bsp1720I GCTNAGC 1 cut(s) 1125
Bsp19I CCATGG 1 cut(s) 119
BspACI CCGC 2 cut(s) 266, 733
BspANI GGCC 5 cut(s) 36, 317, 865, 980, 1022
BspCNI CTCAG 3 cut(s) 470, 771, 1138
BspDI ATCGAT 1 cut(s) 1662
BspEI TCCGGA 1 cut(s) 1483
BspHI TCATGA 1 cut(s) 1687
BspLI GGNNCC 1 cut(s) 511
BspMAI CTGCAG 1 cut(s) 1517
BspMI ACCTGC 2 cut(s) 677, 1520
BspPI GGATC 4 cut(s) 373, 446, 1692, 1730
BspTNI GGTCTC 2 cut(s) 1415, 1747
BsrI ACTGG 1 cut(s) 439
BssECI CCNNGG 3 cut(s) 119, 640, 1745
BssMI GATC 5 cut(s) 236, 365, 438, 1684, 1735
BssT1I CCWWGG 1 cut(s) 119
Bst2UI CCWGG 4 cut(s) 314, 642, 977, 1747
Bst4CI ACNGT 4 cut(s) 603, 740, 940, 1532
Bst6I CTCTTC 2 cut(s) 1152, 1637
BstC8I GCNNGC 4 cut(s) 533, 695, 863, 1163
BstDEI CTNAG 5 cut(s) 457, 527, 758, 803, 1125
BstDSI CCRYGG 1 cut(s) 119
BstF5I GGATG 4 cut(s) 109, 513, 1270, 1626
BstKTI GATC 5 cut(s) 239, 368, 441, 1687, 1738
BstMAI GTCTC 6 cut(s) 1051, 1147, 1415, 1627, 1747, 1804
BstMBI GATC 5 cut(s) 236, 365, 438, 1684, 1735
BstMWI GCNNNNNNNGC 5 cut(s) 633, 683, 703, 1289, 1397
BstNI CCWGG 4 cut(s) 314, 642, 977, 1747
BstSCI CCNGG 4 cut(s) 312, 640, 975, 1745
BstSFI CTRYAG 1 cut(s) 1513
BstV1I GCAGC 4 cut(s) 1033, 1212, 1279, 1708
BstV2I GAAGAC 1 cut(s) 1576
BstX2I RGATCY 1 cut(s) 1735
BstYI RGATCY 1 cut(s) 1735
Bsu15I ATCGAT 1 cut(s) 1662
BsuI GTATCC 2 cut(s) 272, 752
BsuRI GGCC 5 cut(s) 36, 317, 865, 980, 1022
BsuTUI ATCGAT 1 cut(s) 1662
BtgI CCRYGG 1 cut(s) 119
BtgZI GCGATG 1 cut(s) 1536
BtrI CACGTC 1 cut(s) 1637
BtsCI GGATG 4 cut(s) 109, 513, 1270, 1626
BtsI GCAGTG 1 cut(s) 779
BtsIMutI CAGTG 1 cut(s) 779
BveI ACCTGC 2 cut(s) 677, 1520
Cac8I GCNNGC 4 cut(s) 533, 695, 863, 1163
CaiI CAGNNNCTG 1 cut(s) 1702
CciI TCATGA 1 cut(s) 1687
ClaI ATCGAT 1 cut(s) 1662
Csp6I GTAC 1 cut(s) 1709
CviQI GTAC 1 cut(s) 1709
DdeI CTNAG 5 cut(s) 457, 527, 758, 803, 1125
DpnI GATC 5 cut(s) 238, 367, 440, 1686, 1737
DpnII GATC 5 cut(s) 236, 365, 438, 1684, 1735
DrdI GACNNNNNNGTC 1 cut(s) 1442
DseDI GACNNNNNNGTC 1 cut(s) 1442
Eam1104I CTCTTC 2 cut(s) 1152, 1637
EarI CTCTTC 2 cut(s) 1152, 1637
EciI GGCGGA 1 cut(s) 748
Ecl136II GAGCTC 1 cut(s) 1124
Eco130I CCWWGG 1 cut(s) 119
Eco147I AGGCCT 2 cut(s) 317, 865
Eco24I GRGCYC 1 cut(s) 1126
Eco31I GGTCTC 2 cut(s) 1415, 1747
Eco53kI GAGCTC 1 cut(s) 1124
Eco57I CTGAAG 2 cut(s) 1122, 1133
Eco88I CYCGRG 1 cut(s) 319
EcoICRI GAGCTC 1 cut(s) 1124
EcoRII CCWGG 4 cut(s) 312, 640, 975, 1745
EcoT14I CCWWGG 1 cut(s) 119
EcoT38I GRGCYC 1 cut(s) 1126
ErhI CCWWGG 1 cut(s) 119
Esp3I CGTCTC 1 cut(s) 1627
FauI CCCGC 1 cut(s) 273
FblI GTMKAC 1 cut(s) 799
Fnu4HI GCNGC 4 cut(s) 1047, 1226, 1293, 1697
FokI GGATG 4 cut(s) 116, 500, 1277, 1633
FriOI GRGCYC 1 cut(s) 1126
Fsp4HI GCNGC 4 cut(s) 1047, 1226, 1293, 1697
FspBI CTAG 3 cut(s) 447, 1373, 1733
GluI GCNGC 4 cut(s) 1047, 1226, 1293, 1697
GsuI CTGGAG 2 cut(s) 198, 1724
HaeIII GGCC 5 cut(s) 36, 317, 865, 980, 1022
HapII CCGG 1 cut(s) 1484
HincII GTYRAC 1 cut(s) 1503
HindII GTYRAC 1 cut(s) 1503
HindIII AAGCTT 2 cut(s) 625, 1210
HinfI GANTC 4 cut(s) 94, 582, 1272, 1664
HpaI GTTAAC 1 cut(s) 1503
HpaII CCGG 1 cut(s) 1484
HphI GGTGA 1 cut(s) 1242
Hpy166II GTNNAC 6 cut(s) 154, 800, 1015, 1076, 1503, 1528
Hpy188I TCNGA 7 cut(s) 132, 386, 460, 880, 915, 1497, 1629
Hpy8I GTNNAC 6 cut(s) 154, 800, 1015, 1076, 1503, 1528
HpyAV CCTTC 4 cut(s) 342, 528, 590, 626
HpyCH4III ACNGT 4 cut(s) 603, 740, 940, 1532
HpyCH4IV ACGT 3 cut(s) 479, 1499, 1636
HpyF10VI GCNNNNNNNGC 5 cut(s) 633, 683, 703, 1289, 1397
HpyF3I CTNAG 5 cut(s) 457, 527, 758, 803, 1125
HpySE526I ACGT 3 cut(s) 479, 1499, 1636
Kpn2I TCCGGA 1 cut(s) 1483
KspAI GTTAAC 1 cut(s) 1503
Kzo9I GATC 5 cut(s) 236, 365, 438, 1684, 1735
LmnI GCTCC 3 cut(s) 405, 417, 1084
Lsp1109I GCAGC 4 cut(s) 1033, 1212, 1279, 1708
LweI GCATC 1 cut(s) 899
MaeI CTAG 3 cut(s) 447, 1373, 1733
MaeII ACGT 3 cut(s) 479, 1499, 1636
MaeIII GTNAC 2 cut(s) 751, 1444
MalI GATC 5 cut(s) 238, 367, 440, 1686, 1737
MboI GATC 5 cut(s) 236, 365, 438, 1684, 1735
MboII GAAGA 7 cut(s) 885, 1139, 1361, 1538, 1581, 1654, 1778
MfeI CAATTG 1 cut(s) 792
MflI RGATCY 1 cut(s) 1735
MhlI GDGCHC 1 cut(s) 1126
MlyI GAGTC 2 cut(s) 591, 1266
MmeI TCCRAC 4 cut(s) 51, 364, 462, 1441
MroI TCCGGA 1 cut(s) 1483
MseI TTAA 6 cut(s) 30, 360, 953, 972, 1184, 1502
MslI CAYNNNNRTG 4 cut(s) 102, 576, 1170, 1233
MspI CCGG 1 cut(s) 1484
MspR9I CCNGG 4 cut(s) 314, 642, 977, 1747
MunI CAATTG 1 cut(s) 792
Mva1269I GAATGC 2 cut(s) 688, 922
MvaI CCWGG 4 cut(s) 314, 642, 977, 1747
MwoI GCNNNNNNNGC 5 cut(s) 633, 683, 703, 1289, 1397
NcoI CCATGG 1 cut(s) 119
NdeII GATC 5 cut(s) 236, 365, 438, 1684, 1735
NlaIV GGNNCC 1 cut(s) 511
NmuCI GTSAC 1 cut(s) 1444
PaeR7I CTCGAG 1 cut(s) 319
PagI TCATGA 1 cut(s) 1687
PaqCI CACCTGC 1 cut(s) 677
PceI AGGCCT 2 cut(s) 317, 865
PctI GAATGC 2 cut(s) 688, 922
PfeI GAWTC 2 cut(s) 94, 1664
PflMI CCANNNNNTGG 2 cut(s) 125, 409
PkrI GCNGC 4 cut(s) 1048, 1227, 1294, 1698
PleI GAGTC 2 cut(s) 590, 1266
PpsI GAGTC 2 cut(s) 590, 1266
PshBI ATTAAT 1 cut(s) 360
Psp124BI GAGCTC 1 cut(s) 1126
Psp1406I AACGTT 1 cut(s) 479
Psp6I CCWGG 4 cut(s) 312, 640, 975, 1745
PspGI CCWGG 4 cut(s) 312, 640, 975, 1745
PspN4I GGNNCC 1 cut(s) 511
PspXI VCTCGAGB 1 cut(s) 319
PstI CTGCAG 1 cut(s) 1517
PstNI CAGNNNCTG 1 cut(s) 1702
PsuI RGATCY 1 cut(s) 1735
RsaI GTAC 1 cut(s) 1710
RsaNI GTAC 1 cut(s) 1709
RseI CAYNNNNRTG 4 cut(s) 102, 576, 1170, 1233
SacI GAGCTC 1 cut(s) 1126
SaqAI TTAA 6 cut(s) 30, 360, 953, 972, 1184, 1502
SatI GCNGC 4 cut(s) 1047, 1226, 1293, 1697
Sau3AI GATC 5 cut(s) 236, 365, 438, 1684, 1735
SbfI CCTGCAGG 1 cut(s) 1517
SchI GAGTC 2 cut(s) 591, 1266
ScrFI CCNGG 4 cut(s) 314, 642, 977, 1747
SdaI CCTGCAGG 1 cut(s) 1517
SduI GDGCHC 1 cut(s) 1126
SfaNI GCATC 1 cut(s) 899
SfcI CTRYAG 1 cut(s) 1513
Sfr274I CTCGAG 1 cut(s) 319
SlaI CTCGAG 1 cut(s) 319
SmiMI CAYNNNNRTG 4 cut(s) 102, 576, 1170, 1233
SmlI CTYRAG 8 cut(s) 319, 343, 607, 622, 1117, 1274, 1284, 1414
SmoI CTYRAG 8 cut(s) 319, 343, 607, 622, 1117, 1274, 1284, 1414
Sse8387I CCTGCAGG 1 cut(s) 1517
SseBI AGGCCT 2 cut(s) 317, 865
SsiI CCGC 2 cut(s) 266, 733
SspI AATATT 2 cut(s) 660, 1336
SspMI CTAG 3 cut(s) 447, 1373, 1733
SstI GAGCTC 1 cut(s) 1126
StuI AGGCCT 2 cut(s) 317, 865
StyD4I CCNGG 4 cut(s) 312, 640, 975, 1745
StyI CCWWGG 1 cut(s) 119
TaaI ACNGT 4 cut(s) 603, 740, 940, 1532
TaiI ACGT 3 cut(s) 482, 1502, 1639
TaqI TCGA 5 cut(s) 235, 320, 1345, 1662, 1764
TfiI GAWTC 2 cut(s) 94, 1664
Tru1I TTAA 6 cut(s) 30, 360, 953, 972, 1184, 1502
Tru9I TTAA 6 cut(s) 30, 360, 953, 972, 1184, 1502
TscAI CASTG 1 cut(s) 786
TseFI GTSAC 1 cut(s) 1444
TseI GCWGC 4 cut(s) 1046, 1225, 1292, 1696
Tsp45I GTSAC 1 cut(s) 1444
TspDTI ATGAA 4 cut(s) 510, 609, 1245, 1656
TspGWI ACGGA 1 cut(s) 1314
TspRI CASTG 1 cut(s) 786
Van91I CCANNNNNTGG 2 cut(s) 125, 409
VspI ATTAAT 1 cut(s) 360
XapI RAATTY 4 cut(s) 19, 39, 1091, 1382
XbaI TCTAGA 1 cut(s) 1372
XhoI CTCGAG 1 cut(s) 319
XmiI GTMKAC 1 cut(s) 799
XspI CTAG 3 cut(s) 447, 1373, 1733
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.