Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001072.1

Orthogroup ID

OG0007896

Physical Location & Seq

Genomic Coordinates Forward (+)

119989 .. 121429

Gene Structure 1441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

atgggcaagcaagggccctgctatcactgtggagttacaagcacccccctttggcgcaatgggccacctgaaaagccagtactttgcaatgcatgtggatctcgatggaggactaagggaacacttgtaaattatacccctctacatgctcgagcagaacctgaggattatgaagatcacagagtttccaggatgaagagcatgtctataaataaaaacaaagaagtgaaactggttaaaagaaagcagcatcctgacagtgtagtggttggtgctgattactcccatgggtttcgaaaggtagttgatgaagatacaagtaatagatccagttctgggtctgctgtgtccaacactgaaagctgtgcacactttgggagtgcagatgcaagtgatttgacaggtcggatactctgtgacaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000976 GO:0000977 GO:0000981 GO:0001012 GO:0001067 GO:0001085 GO:0001228 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0006139 GO:0006351 GO:0006355 GO:0006357 GO:0006366 GO:0006725 GO:0006807 GO:0008134 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0016070 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0032774 GO:0032991 GO:0034641 GO:0034645 GO:0034654 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0090304 GO:0097159 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1902680 GO:1903506 GO:1903508 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ASXH GATA RPN13_C

Protein Analysis

141

Amino Acids

15.51

Weight (kDa)

8.77

Isoelectric Point (pI)

45.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GATA	PF00320	7 - 41	6.4e-15	GATA zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007896)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G17570 AT4G17570 AT4G17570 AT5G47140
fragaria_vesca	FvH4_5g20240 FvH4_5g20240
malus_domestica	MD04G1052000.v1.1 MD06G1048100.v1.1
prunus_persica	Prupe.5G058300_v2.0.a1 Prupe.5G058300_v2.0.a1 Prupe.5G058300_v2.0.a1
pyrus_communis	pycom04g04570 pycom06g04110
rosa_chinensis	RchiOBHm_Chr7g0205311
rosa_laevigata	RLG00000003389
rosa_multiflora	Rmu_sc0001072.1_g000024 Rmu_ssc0000004.1_g000026
rosa_roxburghii	Rroxscaffold_3G00252480
rosa_rugosa	Rorug07G0089600
rosa_samantha	Rh7AG220300 Rh7BG216400 Rh7CG233100 Rh7DG227200
rosa_wichuraiana	Rw7G019040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	106, 321
AfaI	GTAC	1 cut(s)	81
AfiI	CCNNNNNNNGG	2 cut(s)	51, 336
AjnI	CCWGG	1 cut(s)	188
AluBI	AGCT	1 cut(s)	363
AluI	AGCT	1 cut(s)	363
Alw21I	GWGCWC	1 cut(s)	370
Alw44I	GTGCAC	1 cut(s)	366
AlwI	GGATC	2 cut(s)	106, 321
AlwNI	CAGNNNCTG	1 cut(s)	161
Ama87I	CYCGRG	1 cut(s)	150
AoxI	GGCC	2 cut(s)	14, 62
ApaI	GGGCCC	1 cut(s)	18
ApaLI	GTGCAC	1 cut(s)	366
ApeKI	GCWGC	1 cut(s)	247
AspLEI	GCGC	1 cut(s)	57
AspS9I	GGNCC	3 cut(s)	14, 15, 62
AsuII	TTCGAA	1 cut(s)	295
AvaI	CYCGRG	1 cut(s)	150
AxyI	CCTNAGG	1 cut(s)	162
BaeGI	GKGCMC	2 cut(s)	18, 370
BanII	GRGCYC	1 cut(s)	18
Bbv12I	GWGCWC	1 cut(s)	370
BbvI	GCAGC	1 cut(s)	259
BccI	CCATC	1 cut(s)	99
BciT130I	CCWGG	1 cut(s)	190
BciVI	GTATCC	1 cut(s)	402
BfuI	GTATCC	1 cut(s)	402
BisI	GCNGC	1 cut(s)	248
BlsI	GCNGC	1 cut(s)	249
BmcAI	AGTACT	1 cut(s)	81
Bme1390I	CCNGG	1 cut(s)	190
BmeT110I	CYCGRG	1 cut(s)	150
BmgT120I	GGNCC	3 cut(s)	14, 15, 62
BmiI	GGNNCC	1 cut(s)	16
BmrFI	CCNGG	1 cut(s)	190
BmsI	GCATC	2 cut(s)	259, 376
Bpu14I	TTCGAA	1 cut(s)	295
BsaJI	CCNNGG	1 cut(s)	286
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 336
Bse1I	ACTGG	3 cut(s)	77, 237, 330
Bse21I	CCTNAGG	1 cut(s)	162
Bse3DI	GCAATG	2 cut(s)	64, 94
BseBI	CCWGG	1 cut(s)	190
BseDI	CCNNGG	1 cut(s)	286
BseGI	GGATG	2 cut(s)	198, 250
BseLI	CCNNNNNNNGG	2 cut(s)	51, 336
BseMI	GCAATG	2 cut(s)	64, 94
BseMII	CTCAG	1 cut(s)	153
BseNI	ACTGG	3 cut(s)	77, 237, 330
BseSI	GKGCMC	2 cut(s)	18, 370
BseXI	GCAGC	1 cut(s)	259
BsgI	GTGCAG	1 cut(s)	402
BshFI	GGCC	2 cut(s)	16, 64
BsiHKAI	GWGCWC	1 cut(s)	370
BsiHKCI	CYCGRG	1 cut(s)	150
BslI	CCNNNNNNNGG	2 cut(s)	51, 336
BsnI	GGCC	2 cut(s)	16, 64
BsoBI	CYCGRG	1 cut(s)	150
Bsp119I	TTCGAA	1 cut(s)	295
Bsp120I	GGGCCC	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	18, 370
Bsp143I	GATC	3 cut(s)	98, 175, 326
Bsp19I	CCATGG	1 cut(s)	286
BspANI	GGCC	2 cut(s)	16, 64
BspCNI	CTCAG	1 cut(s)	154
BspLI	GGNNCC	1 cut(s)	16
BspPI	GGATC	2 cut(s)	106, 321
BspQI	GCTCTTC	1 cut(s)	191
BspT104I	TTCGAA	1 cut(s)	295
BsrDI	GCAATG	2 cut(s)	64, 94
BsrI	ACTGG	3 cut(s)	77, 237, 330
BssECI	CCNNGG	1 cut(s)	286
BssMI	GATC	3 cut(s)	98, 175, 326
BssT1I	CCWWGG	1 cut(s)	286
Bst2UI	CCWGG	1 cut(s)	190
Bst4CI	ACNGT	2 cut(s)	29, 260
Bst6I	CTCTTC	1 cut(s)	191
BstBI	TTCGAA	1 cut(s)	295
BstC8I	GCNNGC	1 cut(s)	8
BstDEI	CTNAG	2 cut(s)	114, 162
BstDSI	CCRYGG	1 cut(s)	286
BstF5I	GGATG	2 cut(s)	198, 250
BstHHI	GCGC	1 cut(s)	57
BstKTI	GATC	3 cut(s)	101, 178, 329
BstMBI	GATC	3 cut(s)	98, 175, 326
BstMWI	GCNNNNNNNGC	1 cut(s)	61
BstNI	CCWGG	1 cut(s)	190
BstNSI	RCATGY	3 cut(s)	96, 149, 205
BstSCI	CCNGG	1 cut(s)	188
BstSLI	GKGCMC	2 cut(s)	18, 370
BstV1I	GCAGC	1 cut(s)	259
BstX2I	RGATCY	2 cut(s)	98, 326
BstYI	RGATCY	2 cut(s)	98, 326
Bsu36I	CCTNAGG	1 cut(s)	162
BsuI	GTATCC	1 cut(s)	402
BsuRI	GGCC	2 cut(s)	16, 64
BtgI	CCRYGG	1 cut(s)	286
BtsCI	GGATG	2 cut(s)	198, 250
BtsIMutI	CAGTG	3 cut(s)	25, 265, 354
Cac8I	GCNNGC	1 cut(s)	8
CaiI	CAGNNNCTG	1 cut(s)	161
CfoI	GCGC	1 cut(s)	57
Cfr13I	GGNCC	3 cut(s)	14, 15, 62
Csp6I	GTAC	1 cut(s)	80
CspCI	CAANNNNNGTGG	2 cut(s)	76, 111
CviAII	CATG	4 cut(s)	93, 146, 202, 287
CviJI	RGCY	4 cut(s)	16, 64, 76, 363
CviKI_1	RGCY	4 cut(s)	16, 64, 76, 363
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	2 cut(s)	114, 162
DpnI	GATC	3 cut(s)	100, 177, 328
DpnII	GATC	3 cut(s)	98, 175, 326
Eam1104I	CTCTTC	1 cut(s)	191
EarI	CTCTTC	1 cut(s)	191
Eco130I	CCWWGG	1 cut(s)	286
Eco24I	GRGCYC	1 cut(s)	18
Eco81I	CCTNAGG	1 cut(s)	162
Eco88I	CYCGRG	1 cut(s)	150
EcoO109I	RGGNCCY	2 cut(s)	14, 15
EcoRII	CCWGG	1 cut(s)	188
EcoT14I	CCWWGG	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	94
EcoT38I	GRGCYC	1 cut(s)	18
ErhI	CCWWGG	1 cut(s)	286
FaeI	CATG	4 cut(s)	96, 149, 205, 290
FaiI	YATR	7 cut(s)	94, 135, 147, 171, 203, 209, 288
FatI	CATG	4 cut(s)	92, 145, 201, 286
Fnu4HI	GCNGC	1 cut(s)	248
FokI	GGATG	2 cut(s)	205, 237
FriOI	GRGCYC	1 cut(s)	18
Fsp4HI	GCNGC	1 cut(s)	248
GlaI	GCGC	1 cut(s)	56
GluI	GCNGC	1 cut(s)	248
HaeIII	GGCC	2 cut(s)	16, 64
HhaI	GCGC	1 cut(s)	57
Hin1II	CATG	4 cut(s)	96, 149, 205, 290
Hin6I	GCGC	1 cut(s)	55
HinP1I	GCGC	1 cut(s)	55
Hpy166II	GTNNAC	1 cut(s)	368
Hpy188I	TCNGA	1 cut(s)	408
Hpy188III	TCNNGA	2 cut(s)	102, 254
Hpy8I	GTNNAC	1 cut(s)	368
HpyCH4III	ACNGT	2 cut(s)	29, 260
HpyCH4V	TGCA	5 cut(s)	87, 92, 368, 383, 389
HpyF10VI	GCNNNNNNNGC	1 cut(s)	61
HpyF3I	CTNAG	2 cut(s)	114, 162
Hsp92II	CATG	4 cut(s)	96, 149, 205, 290
HspAI	GCGC	1 cut(s)	55
Kzo9I	GATC	3 cut(s)	98, 175, 326
LguI	GCTCTTC	1 cut(s)	191
Lsp1109I	GCAGC	1 cut(s)	259
LweI	GCATC	2 cut(s)	259, 376
MaeIII	GTNAC	2 cut(s)	34, 416
MalI	GATC	3 cut(s)	100, 177, 328
MboI	GATC	3 cut(s)	98, 175, 326
MboII	GAAGA	3 cut(s)	185, 208, 323
MflI	RGATCY	2 cut(s)	98, 326
MhlI	GDGCHC	2 cut(s)	18, 370
MluCI	AATT	2 cut(s)	130, 421
MmeI	TCCRAC	2 cut(s)	375, 386
MnlI	CCTC	3 cut(s)	102, 150, 157
Mph1103I	ATGCAT	1 cut(s)	94
MseI	TTAA	2 cut(s)	237, 424
MspR9I	CCNGG	1 cut(s)	190
MvaI	CCWGG	1 cut(s)	190
MwoI	GCNNNNNNNGC	1 cut(s)	61
NcoI	CCATGG	1 cut(s)	286
NdeII	GATC	3 cut(s)	98, 175, 326
NlaIII	CATG	4 cut(s)	96, 149, 205, 290
NlaIV	GGNNCC	1 cut(s)	16
NmuCI	GTSAC	1 cut(s)	416
NsiI	ATGCAT	1 cut(s)	94
NspI	RCATGY	3 cut(s)	96, 149, 205
NspV	TTCGAA	1 cut(s)	295
PaeR7I	CTCGAG	1 cut(s)	150
PciSI	GCTCTTC	1 cut(s)	191
PfoI	TCCNGGA	1 cut(s)	188
PkrI	GCNGC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	188
PspGI	CCWGG	1 cut(s)	188
PspN4I	GGNNCC	1 cut(s)	16
PspOMI	GGGCCC	1 cut(s)	14
PspPI	GGNCC	3 cut(s)	14, 15, 62
PspXI	VCTCGAGB	1 cut(s)	150
PstNI	CAGNNNCTG	1 cut(s)	161
PsuI	RGATCY	2 cut(s)	98, 326
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SapI	GCTCTTC	1 cut(s)	191
SaqAI	TTAA	2 cut(s)	237, 424
SatI	GCNGC	1 cut(s)	248
Sau3AI	GATC	3 cut(s)	98, 175, 326
Sau96I	GGNCC	3 cut(s)	14, 15, 62
ScaI	AGTACT	1 cut(s)	81
ScrFI	CCNGG	1 cut(s)	190
SduI	GDGCHC	2 cut(s)	18, 370
SetI	ASST	5 cut(s)	70, 163, 303, 365, 406
SfaNI	GCATC	2 cut(s)	259, 376
Sfr274I	CTCGAG	1 cut(s)	150
SfuI	TTCGAA	1 cut(s)	295
SlaI	CTCGAG	1 cut(s)	150
SmlI	CTYRAG	1 cut(s)	150
SmoI	CTYRAG	1 cut(s)	150
Sse9I	AATT	2 cut(s)	130, 421
StyD4I	CCNGG	1 cut(s)	188
StyI	CCWWGG	1 cut(s)	286
TaaI	ACNGT	2 cut(s)	29, 260
TaqI	TCGA	3 cut(s)	103, 151, 295
TasI	AATT	2 cut(s)	130, 421
TatI	WGTACW	1 cut(s)	79
Tru1I	TTAA	2 cut(s)	237, 424
Tru9I	TTAA	2 cut(s)	237, 424
TscAI	CASTG	3 cut(s)	32, 265, 361
TseFI	GTSAC	1 cut(s)	416
TseI	GCWGC	1 cut(s)	247
Tsp45I	GTSAC	1 cut(s)	416
TspDTI	ATGAA	3 cut(s)	186, 209, 324
TspRI	CASTG	3 cut(s)	32, 265, 361
VneI	GTGCAC	1 cut(s)	366
XceI	RCATGY	3 cut(s)	96, 149, 205
XhoI	CTCGAG	1 cut(s)	150
ZrmI	AGTACT	1 cut(s)	81
Zsp2I	ATGCAT	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.