Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001084.1

Orthogroup ID

OG0017727

Physical Location & Seq

Genomic Coordinates Reverse (-)

29324 .. 29653

Gene Structure 330 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

ctgcatctaccttatcggcttcttcggcatcgagttggtccagtccttcatctcttcggcatcgacgactcctgggaagacgacaacgaagacgtcctcatcgactcccgctgcttccctccccctgccaaacccaaattcgtggacgccgaccccgtgttgtgctctgaggaggacgaggacatcacccaggccgttctagacggcgccgttccgttttactctctcgaatcgaagctcggggataagagagcggtggcgattcggcgcgagtggcttcagagaatgaccggaggattctattatgtcagcttcaatgaaagagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005783 GO:0005789 GO:0009526 GO:0009536 GO:0012505 GO:0016020 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031984 GO:0042170 GO:0042175 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044432 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0098827

KEGG Pathways

Metabolic & Signaling

ko00900 ko01100 ko01110 ko01130 ko04152 ko04976 map00900 map01100 map01110 map01130 map04152 map04976

Pfam Domains

Protein Families

HMG-CoA_red

Protein Analysis

109

Amino Acids

12.56

Weight (kDa)

4.82

Isoelectric Point (pI)

57.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017727)

Species	Orthologous Gene IDs
malus_domestica	MD13G1262400.v1.1
rosa_laevigata	RLG00000016669 RLG00000018668
rosa_multiflora	Rmu_sc0001084.1_g000005 Rmu_sc0002712.1_g000014 Rmu_sc0003669.1_g000029 Rmu_sc0013561.1_g000001 Rmu_sc0032262.1_g000001
rosa_roxburghii	Rroxscaffold_4G00329150 Rroxscaffold_7G00176570
rosa_samantha	Rh3BG322900 Rh4DG243400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	96
AccB1I	GGYRCC	1 cut(s)	206
AccBSI	CCGCTC	1 cut(s)	254
AccII	CGCG	1 cut(s)	270
AciI	CCGC	2 cut(s)	109, 254
AcsI	RAATTY	1 cut(s)	137
AcuI	CTGAAG	1 cut(s)	263
AcyI	GRCGYC	3 cut(s)	93, 147, 207
AgsI	TTSAA	1 cut(s)	316
AjnI	CCWGG	2 cut(s)	71, 189
AjuI	GAANNNNNNNTTGG	2 cut(s)	122, 154
AluBI	AGCT	2 cut(s)	238, 312
AluI	AGCT	2 cut(s)	238, 312
Alw21I	GWGCWC	1 cut(s)	167
Ama87I	CYCGRG	1 cut(s)	239
AoxI	GGCC	1 cut(s)	192
ApeKI	GCWGC	1 cut(s)	111
ApoI	RAATTY	1 cut(s)	137
AspLEI	GCGC	2 cut(s)	209, 270
AspS9I	GGNCC	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	178
AvaI	CYCGRG	1 cut(s)	239
AvaII	GGWCC	1 cut(s)	38
BanI	GGYRCC	1 cut(s)	206
BbsI	GAAGAC	2 cut(s)	84, 96
Bbv12I	GWGCWC	1 cut(s)	167
BbvI	GCAGC	1 cut(s)	98
BceAI	ACGGC	3 cut(s)	179, 194, 220
BciT130I	CCWGG	2 cut(s)	73, 191
BfaI	CTAG	1 cut(s)	200
BfoI	RGCGCY	1 cut(s)	210
BisI	GCNGC	1 cut(s)	112
BlsI	GCNGC	1 cut(s)	113
Bme1390I	CCNGG	2 cut(s)	73, 191
Bme18I	GGWCC	1 cut(s)	38
BmeT110I	CYCGRG	1 cut(s)	239
BmgT120I	GGNCC	1 cut(s)	38
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	2 cut(s)	73, 191
BmsI	GCATC	3 cut(s)	13, 37, 69
BpiI	GAAGAC	2 cut(s)	84, 96
BsaHI	GRCGYC	3 cut(s)	93, 147, 207
BsaJI	CCNNGG	2 cut(s)	72, 189
BsaWI	WCCGGW	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	41
BseBI	CCWGG	2 cut(s)	73, 191
BseDI	CCNNGG	2 cut(s)	72, 189
BseMII	CTCAG	1 cut(s)	159
BseNI	ACTGG	1 cut(s)	41
BseRI	GAGGAG	1 cut(s)	185
BseXI	GCAGC	1 cut(s)	98
Bsh1236I	CGCG	1 cut(s)	270
BshFI	GGCC	1 cut(s)	194
BshNI	GGYRCC	1 cut(s)	206
BsiHKAI	GWGCWC	1 cut(s)	167
BsiHKCI	CYCGRG	1 cut(s)	239
BsiSI	CCGG	1 cut(s)	291
BsnI	GGCC	1 cut(s)	194
BsoBI	CYCGRG	1 cut(s)	239
Bsp1286I	GDGCHC	1 cut(s)	167
BspACI	CCGC	2 cut(s)	109, 254
BspANI	GGCC	1 cut(s)	194
BspCNI	CTCAG	1 cut(s)	160
BspFNI	CGCG	1 cut(s)	270
BspLI	GGNNCC	1 cut(s)	208
BspT107I	GGYRCC	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	254
BsrI	ACTGG	1 cut(s)	41
BssECI	CCNNGG	2 cut(s)	72, 189
BssNI	GRCGYC	3 cut(s)	93, 147, 207
Bst2UI	CCWGG	2 cut(s)	73, 191
Bst6I	CTCTTC	1 cut(s)	59
BstACI	GRCGYC	3 cut(s)	93, 147, 207
BstDEI	CTNAG	1 cut(s)	168
BstFNI	CGCG	1 cut(s)	270
BstH2I	RGCGCY	1 cut(s)	210
BstHHI	GCGC	2 cut(s)	209, 270
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 274
BstNI	CCWGG	2 cut(s)	73, 191
BstSCI	CCNGG	2 cut(s)	71, 189
BstUI	CGCG	1 cut(s)	270
BstV1I	GCAGC	1 cut(s)	98
BstV2I	GAAGAC	2 cut(s)	84, 96
BstXI	CCANNNNNNTGG	1 cut(s)	142
BsuRI	GGCC	1 cut(s)	194
CfoI	GCGC	2 cut(s)	209, 270
Cfr13I	GGNCC	1 cut(s)	38
CseI	GACGC	1 cut(s)	155
CviJI	RGCY	5 cut(s)	19, 194, 238, 277, 312
CviKI_1	RGCY	5 cut(s)	19, 194, 238, 277, 312
DdeI	CTNAG	1 cut(s)	168
DinI	GGCGCC	1 cut(s)	208
Eam1104I	CTCTTC	1 cut(s)	59
EarI	CTCTTC	1 cut(s)	59
Eco47I	GGWCC	1 cut(s)	38
Eco57I	CTGAAG	1 cut(s)	263
Eco88I	CYCGRG	1 cut(s)	239
EcoRII	CCWGG	2 cut(s)	71, 189
EgeI	GGCGCC	1 cut(s)	208
EheI	GGCGCC	1 cut(s)	208
FaiI	YATR	1 cut(s)	306
FauI	CCCGC	1 cut(s)	116
Fnu4HI	GCNGC	1 cut(s)	112
Fsp4HI	GCNGC	1 cut(s)	112
FspBI	CTAG	1 cut(s)	200
GlaI	GCGC	2 cut(s)	208, 269
GluI	GCNGC	1 cut(s)	112
HaeII	RGCGCY	1 cut(s)	210
HaeIII	GGCC	1 cut(s)	194
HapII	CCGG	1 cut(s)	291
HgaI	GACGC	1 cut(s)	155
HhaI	GCGC	2 cut(s)	209, 270
Hin1I	GRCGYC	3 cut(s)	93, 147, 207
Hin6I	GCGC	2 cut(s)	207, 268
HinP1I	GCGC	2 cut(s)	207, 268
HinfI	GANTC	5 cut(s)	68, 104, 230, 262, 297
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	2 cut(s)	169, 282
Hpy188III	TCNNGA	2 cut(s)	200, 227
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	56
HpyCH4IV	ACGT	1 cut(s)	93
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 274
HpyF3I	CTNAG	1 cut(s)	168
HpySE526I	ACGT	1 cut(s)	93
Hsp92I	GRCGYC	3 cut(s)	93, 147, 207
HspAI	GCGC	2 cut(s)	207, 268
KasI	GGCGCC	1 cut(s)	206
LpnPI	CCDG	7 cut(s)	54, 58, 85, 138, 176, 203, 304
Lsp1109I	GCAGC	1 cut(s)	98
LweI	GCATC	3 cut(s)	13, 37, 69
MaeI	CTAG	1 cut(s)	200
MaeII	ACGT	1 cut(s)	93
MbiI	CCGCTC	1 cut(s)	254
MboII	GAAGA	4 cut(s)	14, 46, 89, 101
MhlI	GDGCHC	1 cut(s)	167
MluCI	AATT	1 cut(s)	137
Mly113I	GGCGCC	1 cut(s)	207
MlyI	GAGTC	2 cut(s)	62, 98
MnlI	CCTC	6 cut(s)	107, 129, 163, 166, 172, 287
MspA1I	CMGCKG	1 cut(s)	111
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	2 cut(s)	73, 191
MvaI	CCWGG	2 cut(s)	73, 191
MvnI	CGCG	1 cut(s)	270
MwoI	GCNNNNNNNGC	2 cut(s)	25, 274
NarI	GGCGCC	1 cut(s)	207
NlaIV	GGNNCC	1 cut(s)	208
PcsI	WCGNNNNNNNCGW	4 cut(s)	63, 99, 147, 153
PfeI	GAWTC	3 cut(s)	230, 262, 297
PkrI	GCNGC	1 cut(s)	113
PleI	GAGTC	2 cut(s)	62, 98
PluTI	GGCGCC	1 cut(s)	210
PpsI	GAGTC	2 cut(s)	62, 98
Psp6I	CCWGG	2 cut(s)	71, 189
PspGI	CCWGG	2 cut(s)	71, 189
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	38
SatI	GCNGC	1 cut(s)	112
Sau96I	GGNCC	1 cut(s)	38
SchI	GAGTC	2 cut(s)	62, 98
ScrFI	CCNGG	2 cut(s)	73, 191
SduI	GDGCHC	1 cut(s)	167
SetI	ASST	4 cut(s)	13, 96, 240, 314
SfaNI	GCATC	3 cut(s)	13, 37, 69
SfoI	GGCGCC	1 cut(s)	208
SinI	GGWCC	1 cut(s)	38
Sse9I	AATT	1 cut(s)	137
SsiI	CCGC	2 cut(s)	109, 254
SspDI	GGCGCC	1 cut(s)	206
SspMI	CTAG	1 cut(s)	200
StyD4I	CCNGG	2 cut(s)	71, 189
TaiI	ACGT	1 cut(s)	96
TaqI	TCGA	5 cut(s)	31, 63, 102, 228, 233
TasI	AATT	1 cut(s)	137
TfiI	GAWTC	3 cut(s)	230, 262, 297
TseI	GCWGC	1 cut(s)	111
TspDTI	ATGAA	1 cut(s)	38
TspGWI	ACGGA	1 cut(s)	204
VpaK11BI	GGWCC	1 cut(s)	38
XapI	RAATTY	1 cut(s)	137
XbaI	TCTAGA	1 cut(s)	199
XspI	CTAG	1 cut(s)	200
ZraI	GACGTC	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.