Rmu_sc0001207.1_g000023

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001207.1
OG0018507
Physical Location & Seq
Forward (+)
93912 .. 95117
1206 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001207.1_g000023.1.cds

Sequence Viewer

Length: 1206 bp
atgtctcataataagttggaaggttcaattccgtcattcagtggggtcaagaatgttgtcgatatagaccttttcgataatggtctaacaggtactattgattccacccactggagaaaccttaataatctatcttctctcattctgagctccaataagctcgatgggaataccccatcatctttgttttctcttcccctattgtatagtctagatctttctagcaatcaattctctgggccattcgctgaaatttcaaatgtgtcttcctacttgctttatgatcttgatttgagtagcaacaatctagaagggccaatacctatgtctatctttagcttgcaaggtcttatcaatctagatctttcttcaaataatttaagtggttcgtttcgtccaaactgtctacaccaactgagatctctttctgtacttgatctttcatataatctgagatctctttctttacttgatctttcatataataacttgtttcttacccctgattataccaatttctcatattcctcaagttctggactatctgatttgaggttggtgtcattgcagttgagaacaattcctcatttcttgagaaatcaatcagtgattaatttggaccttttagagaaccagataagtggcatactcaactggatttggagtttaaataatctcaaatccctacatctttcttggaactctctagataatctagaagttcagttggtcaaaccgactactctggcgatcatcttgattgacttctcgtgcaacacgttcaaaggatcaataccaaaggaaattggagaacttgtatcattagagaccctcaacttgtccaacaatgctttcacaggtgcagttccatcatcactaagttacttgagtcagctacattctttggacctctcgagaaacaaactgagcggtcaaatcccaccggagcttacaaatctcacttaccttgcattcctgaatctctcatataatcgattggtcgggaggataccaagcggtgctcgattttcaacatttgatgcagcttccttcaaaggtaacaaaggattatggggacctcctttaccagcagataagacatggtcaaatcatagacatgagattgatttggatattatctgtcatgaacagacgacagagcttagacgacagaatagttgttttctgttgtttgatatattttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

401

Amino Acids

44.61

Weight (kDa)

5.43

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 111
AccBSI CCGCTC 1 cut(s) 930
AccI GTMKAC 1 cut(s) 406
AciI CCGC 2 cut(s) 930, 1017
AclWI GGATC 1 cut(s) 796
AcsI RAATTY 1 cut(s) 252
AfaI GTAC 2 cut(s) 94, 432
AfiI CCNNNNNNNGG 1 cut(s) 111
AflIII ACRYGT 1 cut(s) 777
AgsI TTSAA 6 cut(s) 27, 258, 372, 784, 1032, 1054
AjuI GAANNNNNNNTTGG 2 cut(s) 836, 868
AluBI AGCT 7 cut(s) 150, 160, 339, 895, 949, 1046, 1162
AluI AGCT 7 cut(s) 150, 160, 339, 895, 949, 1046, 1162
Alw21I GWGCWC 2 cut(s) 152, 1024
Alw26I GTCTC 2 cut(s) 9, 821
AlwI GGATC 1 cut(s) 796
Ama87I CYCGRG 1 cut(s) 913
AoxI GGCC 2 cut(s) 239, 314
ApeKI GCWGC 1 cut(s) 1043
ApoI RAATTY 1 cut(s) 252
AseI ATTAAT 1 cut(s) 612
AspS9I GGNCC 5 cut(s) 239, 314, 619, 907, 1076
AvaI CYCGRG 1 cut(s) 913
AvaII GGWCC 3 cut(s) 619, 907, 1076
BanII GRGCYC 1 cut(s) 152
BarI GAAGNNNNNNTAC 2 cut(s) 303, 335
BauI CACGAG 1 cut(s) 769
BbsI GAAGAC 1 cut(s) 258
Bbv12I GWGCWC 2 cut(s) 152, 1024
BbvI GCAGC 1 cut(s) 1055
BccI CCATC 3 cut(s) 158, 184, 877
BciVI GTATCC 1 cut(s) 1002
BcoDI GTCTC 2 cut(s) 9, 821
BfaI CTAG 6 cut(s) 212, 222, 308, 359, 707, 716
BfuI GTATCC 1 cut(s) 1002
BglII AGATCT 4 cut(s) 214, 361, 419, 455
BisI GCNGC 1 cut(s) 1044
BlsI GCNGC 1 cut(s) 1045
Bme18I GGWCC 3 cut(s) 619, 907, 1076
BmeT110I CYCGRG 1 cut(s) 913
BmgT120I GGNCC 5 cut(s) 239, 314, 619, 907, 1076
BmiI GGNNCC 1 cut(s) 1077
BmsI GCATC 1 cut(s) 1030
BpiI GAAGAC 1 cut(s) 258
BpmI CTGGAG 1 cut(s) 133
BpuEI CTTGAG 3 cut(s) 514, 613, 907
Bsa29I ATCGAT 1 cut(s) 994
BsaI GGTCTC 1 cut(s) 821
BsaWI WCCGGW 1 cut(s) 943
BsaXI ACNNNNNCTCC 2 cut(s) 801, 831
Bsc4I CCNNNNNNNGG 1 cut(s) 111
Bse1I ACTGG 2 cut(s) 116, 659
Bse3DI GCAATG 1 cut(s) 563
BseCI ATCGAT 1 cut(s) 994
BseLI CCNNNNNNNGG 1 cut(s) 111
BseMI GCAATG 1 cut(s) 563
BseMII CTCAG 4 cut(s) 137, 407, 443, 917
BseNI ACTGG 2 cut(s) 116, 659
BseXI GCAGC 1 cut(s) 1055
BsgI GTGCAG 1 cut(s) 882
BshFI GGCC 2 cut(s) 241, 316
BshVI ATCGAT 1 cut(s) 994
BsiHKAI GWGCWC 2 cut(s) 152, 1024
BsiHKCI CYCGRG 1 cut(s) 913
BsiSI CCGG 1 cut(s) 944
BslFI GGGAC 1 cut(s) 1089
BslI CCNNNNNNNGG 1 cut(s) 111
BsmAI GTCTC 2 cut(s) 9, 821
BsmFI GGGAC 1 cut(s) 1089
BsmI GAATGC 1 cut(s) 971
BsnI GGCC 2 cut(s) 241, 316
Bso31I GGTCTC 1 cut(s) 821
BsoBI CYCGRG 1 cut(s) 913
Bsp1286I GDGCHC 2 cut(s) 152, 1024
Bsp143I GATC 9 cut(s) 214, 283, 361, 419, 436, 455, 472, 750, 788
BspACI CCGC 2 cut(s) 930, 1017
BspANI GGCC 2 cut(s) 241, 316
BspCNI CTCAG 4 cut(s) 138, 408, 444, 918
BspDI ATCGAT 1 cut(s) 994
BspHI TCATGA 1 cut(s) 1144
BspLI GGNNCC 1 cut(s) 1077
BspPI GGATC 1 cut(s) 796
BspTNI GGTCTC 1 cut(s) 821
BsrBI CCGCTC 1 cut(s) 930
BsrDI GCAATG 1 cut(s) 563
BsrI ACTGG 2 cut(s) 116, 659
BssMI GATC 9 cut(s) 214, 283, 361, 419, 436, 455, 472, 750, 788
BssSI CACGAG 1 cut(s) 769
Bst2BI CACGAG 1 cut(s) 769
Bst4CI ACNGT 1 cut(s) 404
Bst6I CTCTTC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 341
BstDEI CTNAG 6 cut(s) 146, 416, 452, 878, 926, 1163
BstKTI GATC 9 cut(s) 217, 286, 364, 422, 439, 458, 475, 753, 791
BstMAI GTCTC 2 cut(s) 9, 821
BstMBI GATC 9 cut(s) 214, 283, 361, 419, 436, 455, 472, 750, 788
BstV1I GCAGC 1 cut(s) 1055
BstV2I GAAGAC 1 cut(s) 258
BstX2I RGATCY 4 cut(s) 214, 361, 419, 455
BstXI CCANNNNNNTGG 1 cut(s) 641
BstYI RGATCY 4 cut(s) 214, 361, 419, 455
Bsu15I ATCGAT 1 cut(s) 994
BsuI GTATCC 1 cut(s) 1002
BsuRI GGCC 2 cut(s) 241, 316
BsuTUI ATCGAT 1 cut(s) 994
BtsIMutI CAGTG 3 cut(s) 46, 109, 612
Cac8I GCNNGC 1 cut(s) 341
CciI TCATGA 1 cut(s) 1144
Cfr13I GGNCC 5 cut(s) 239, 314, 619, 907, 1076
ClaI ATCGAT 1 cut(s) 994
Csp6I GTAC 2 cut(s) 93, 431
CviAII CATG 3 cut(s) 1101, 1118, 1145
CviJI RGCY 9 cut(s) 150, 160, 241, 316, 339, 895, 949, 1046, 1162
CviKI_1 RGCY 9 cut(s) 150, 160, 241, 316, 339, 895, 949, 1046, 1162
CviQI GTAC 2 cut(s) 93, 431
DdeI CTNAG 6 cut(s) 146, 416, 452, 878, 926, 1163
DpnI GATC 9 cut(s) 216, 285, 363, 421, 438, 457, 474, 752, 790
DpnII GATC 9 cut(s) 214, 283, 361, 419, 436, 455, 472, 750, 788
DraI TTTAAA 1 cut(s) 669
Eam1104I CTCTTC 1 cut(s) 198
EarI CTCTTC 1 cut(s) 198
Ecl136II GAGCTC 1 cut(s) 150
Eco24I GRGCYC 1 cut(s) 152
Eco31I GGTCTC 1 cut(s) 821
Eco47I GGWCC 3 cut(s) 619, 907, 1076
Eco53kI GAGCTC 1 cut(s) 150
Eco88I CYCGRG 1 cut(s) 913
EcoICRI GAGCTC 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 1076
EcoT38I GRGCYC 1 cut(s) 152
FaeI CATG 3 cut(s) 1104, 1121, 1148
FaqI GGGAC 1 cut(s) 1089
FatI CATG 3 cut(s) 1100, 1117, 1144
FblI GTMKAC 1 cut(s) 406
Fnu4HI GCNGC 1 cut(s) 1044
FriOI GRGCYC 1 cut(s) 152
Fsp4HI GCNGC 1 cut(s) 1044
FspBI CTAG 6 cut(s) 212, 222, 308, 359, 707, 716
GluI GCNGC 1 cut(s) 1044
GsuI CTGGAG 1 cut(s) 133
HaeIII GGCC 2 cut(s) 241, 316
HapII CCGG 1 cut(s) 944
Hin1II CATG 3 cut(s) 1104, 1121, 1148
HinfI GANTC 3 cut(s) 101, 889, 979
HpaII CCGG 1 cut(s) 944
Hpy166II GTNNAC 1 cut(s) 407
Hpy188I TCNGA 3 cut(s) 147, 453, 547
Hpy8I GTNNAC 1 cut(s) 407
HpyAV CCTTC 3 cut(s) 14, 305, 1060
HpyCH4III ACNGT 1 cut(s) 404
HpyCH4IV ACGT 1 cut(s) 779
HpyCH4V TGCA 6 cut(s) 343, 568, 774, 863, 971, 1043
HpyF3I CTNAG 6 cut(s) 146, 416, 452, 878, 926, 1163
HpySE526I ACGT 1 cut(s) 779
Hsp92II CATG 3 cut(s) 1104, 1121, 1148
Kzo9I GATC 9 cut(s) 214, 283, 361, 419, 436, 455, 472, 750, 788
LmnI GCTCC 2 cut(s) 155, 946
Lsp1109I GCAGC 1 cut(s) 1055
LweI GCATC 1 cut(s) 1030
MaeI CTAG 6 cut(s) 212, 222, 308, 359, 707, 716
MaeII ACGT 1 cut(s) 779
MaeIII GTNAC 2 cut(s) 881, 1058
MalI GATC 9 cut(s) 216, 285, 363, 421, 438, 457, 474, 752, 790
MbiI CCGCTC 1 cut(s) 930
MboI GATC 9 cut(s) 214, 283, 361, 419, 436, 455, 472, 750, 788
MboII GAAGA 4 cut(s) 126, 185, 258, 360
MflI RGATCY 4 cut(s) 214, 361, 419, 455
MhlI GDGCHC 2 cut(s) 152, 1024
MluCI AATT 8 cut(s) 27, 230, 252, 376, 514, 579, 613, 804
MlyI GAGTC 1 cut(s) 898
MmeI TCCRAC 1 cut(s) 867
MnlI CCTC 7 cut(s) 538, 546, 594, 842, 920, 999, 1089
MseI TTAA 5 cut(s) 123, 380, 612, 668, 1204
MslI CAYNNNNRTG 1 cut(s) 1116
MspI CCGG 1 cut(s) 944
Mva1269I GAATGC 1 cut(s) 971
NdeII GATC 9 cut(s) 214, 283, 361, 419, 436, 455, 472, 750, 788
NlaIII CATG 3 cut(s) 1104, 1121, 1148
NlaIV GGNNCC 1 cut(s) 1077
PaeR7I CTCGAG 1 cut(s) 913
PagI TCATGA 1 cut(s) 1144
PcsI WCGNNNNNNNCGW 1 cut(s) 776
PctI GAATGC 1 cut(s) 971
PfeI GAWTC 2 cut(s) 101, 979
PflFI GACNNNGTC 1 cut(s) 1102
PflMI CCANNNNNTGG 1 cut(s) 111
PkrI GCNGC 1 cut(s) 1045
PleI GAGTC 1 cut(s) 897
PpsI GAGTC 1 cut(s) 897
PpuMI RGGWCCY 1 cut(s) 1076
PshBI ATTAAT 1 cut(s) 612
Psp124BI GAGCTC 1 cut(s) 152
Psp5II RGGWCCY 1 cut(s) 1076
PspN4I GGNNCC 1 cut(s) 1077
PspPI GGNCC 5 cut(s) 239, 314, 619, 907, 1076
PspPPI RGGWCCY 1 cut(s) 1076
PsuI RGATCY 4 cut(s) 214, 361, 419, 455
PsyI GACNNNGTC 1 cut(s) 1102
RsaI GTAC 2 cut(s) 94, 432
RsaNI GTAC 2 cut(s) 93, 431
RseI CAYNNNNRTG 1 cut(s) 1116
SacI GAGCTC 1 cut(s) 152
SaqAI TTAA 5 cut(s) 123, 380, 612, 668, 1204
SatI GCNGC 1 cut(s) 1044
Sau3AI GATC 9 cut(s) 214, 283, 361, 419, 436, 455, 472, 750, 788
Sau96I GGNCC 5 cut(s) 239, 314, 619, 907, 1076
SchI GAGTC 1 cut(s) 898
SduI GDGCHC 2 cut(s) 152, 1024
SfaNI GCATC 1 cut(s) 1030
Sfr274I CTCGAG 1 cut(s) 913
SinI GGWCC 3 cut(s) 619, 907, 1076
SlaI CTCGAG 1 cut(s) 913
SmiMI CAYNNNNRTG 1 cut(s) 1116
SmlI CTYRAG 4 cut(s) 529, 592, 886, 913
SmoI CTYRAG 4 cut(s) 529, 592, 886, 913
Sse9I AATT 8 cut(s) 27, 230, 252, 376, 514, 579, 613, 804
SsiI CCGC 2 cut(s) 930, 1017
SspMI CTAG 6 cut(s) 212, 222, 308, 359, 707, 716
SstI GAGCTC 1 cut(s) 152
TaaI ACNGT 1 cut(s) 404
TaiI ACGT 1 cut(s) 782
TaqI TCGA 6 cut(s) 60, 75, 162, 914, 994, 1024
TasI AATT 8 cut(s) 27, 230, 252, 376, 514, 579, 613, 804
TatI WGTACW 1 cut(s) 430
TfiI GAWTC 2 cut(s) 101, 979
Tru1I TTAA 5 cut(s) 123, 380, 612, 668, 1204
Tru9I TTAA 5 cut(s) 123, 380, 612, 668, 1204
TscAI CASTG 3 cut(s) 46, 116, 612
TseI GCWGC 1 cut(s) 1043
TspDTI ATGAA 3 cut(s) 432, 468, 1161
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 3 cut(s) 46, 116, 612
Tth111I GACNNNGTC 1 cut(s) 1102
Van91I CCANNNNNTGG 1 cut(s) 111
VpaK11BI GGWCC 3 cut(s) 619, 907, 1076
VspI ATTAAT 1 cut(s) 612
XapI RAATTY 1 cut(s) 252
XbaI TCTAGA 5 cut(s) 211, 307, 358, 706, 715
XhoI CTCGAG 1 cut(s) 913
XmiI GTMKAC 1 cut(s) 406
XspI CTAG 6 cut(s) 212, 222, 308, 359, 707, 716
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.