Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0018507

Physical Location & Seq

Genomic Coordinates Reverse (-)

33849229 .. 33851271

Gene Structure 2043 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0234800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGTACGACTCCATTTCCAGAGCTTCAATTCTTGTAATTTTGATTGGAATAGTGCTCAGTTTCATGTCTTGGTCAATGGGTTTGTGGTTCTGAAAGTCAGTAACTTTGGATTTGAGGGTGTATTAGGTCCAATGGTTAGGGAGTACTTGATTTGGGTCAGTACTGAAAAGCTTGTAATTCGATTTGTTCTTGATAAAAATTCAAGCTTTGCGTTTGTGAATGCGATTGAGGTCGTTCTGCACCTACGGACCTTGTTGCTAATACTGCAATGCTCTTCATATATATTTGGACAAGCTTTTCAATTAGTTATTCCACAAGCAATATGCACTAGATATGGACTTGTTGTGGGTTCCAACCAATATGTTATCACTTGGATACATTTTGGAGAGAACAGCATGCAGAAATGTGAAATTATGCTCAATGATTTGATTGGTTCTAAGAGGAACAACACCAATATTAAAGCAACCATAGCTCAGCCATCTCATACAGATAGAGAAATGCAGTTCATGGTTGCTCCTCTTCATGCAACAATTATAATGCAATTTCAAGATCAGAAAAGCTGGACCTCCAAAGATCTTGCAGCTGCAGTTGGGGTTCCAATAGATACACTTAATCAGAGGATCAATTTTTGGATAAGCAAGGGAATTCTTGCAGAATCACTTGGGGAAGATACTGATGACCATGTGTTTACACTAATGGAAGGGATGATTGGTTCTTGCCTCTGTTTTCTATTCTGCTTCGTCATTTTTTATTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

252

Amino Acids

28.66

Weight (kDa)

6.14

Isoelectric Point (pI)

22.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018507)

Species	Orthologous Gene IDs
malus_domestica	MD12G1153100.v1.1
rosa_chinensis	RchiOBHm_Chr0c39g0503321 RchiOBHm_Chr1g0353361
rosa_multiflora	Rmu_sc0001207.1_g000023 Rmu_sc0001207.1_g000065
rosa_rugosa	Rorug01G0234500 Rorug01G0234600 Rorug01G0234700 Rorug01G0234800
rosa_samantha	Rh3CG121600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
AclWI	GGATC	1 cut(s)	629
AcsI	RAATTY	2 cut(s)	199, 645
AfaI	GTAC	3 cut(s)	6, 146, 163
AgsI	TTSAA	4 cut(s)	28, 204, 302, 548
AjuI	GAANNNNNNNTTGG	2 cut(s)	693, 725
AloI	GAACNNNNNNTCC	2 cut(s)	697, 729
AluBI	AGCT	7 cut(s)	24, 172, 207, 296, 473, 561, 584
AluI	AGCT	7 cut(s)	24, 172, 207, 296, 473, 561, 584
Alw21I	GWGCWC	1 cut(s)	58
AlwI	GGATC	1 cut(s)	629
ApeKI	GCWGC	2 cut(s)	581, 584
ApoI	RAATTY	2 cut(s)	199, 645
AspS9I	GGNCC	3 cut(s)	128, 249, 564
AvaII	GGWCC	3 cut(s)	128, 249, 564
Bbv12I	GWGCWC	1 cut(s)	58
BbvI	GCAGC	2 cut(s)	571, 593
BccI	CCATC	1 cut(s)	487
BciVI	GTATCC	1 cut(s)	369
BfaI	CTAG	1 cut(s)	330
BfmI	CTRYAG	1 cut(s)	585
BfuI	GTATCC	1 cut(s)	369
BglII	AGATCT	1 cut(s)	574
BisI	GCNGC	2 cut(s)	582, 585
BlpI	GCTNAGC	1 cut(s)	474
BlsI	GCNGC	2 cut(s)	583, 586
BmcAI	AGTACT	2 cut(s)	146, 163
Bme18I	GGWCC	3 cut(s)	128, 249, 564
BmgT120I	GGNCC	3 cut(s)	128, 249, 564
BmiI	GGNNCC	2 cut(s)	352, 597
Bpu1102I	GCTNAGC	1 cut(s)	474
Bse3DI	GCAATG	1 cut(s)	275
BseGI	GGATG	1 cut(s)	711
BseMI	GCAATG	1 cut(s)	275
BseMII	CTCAG	2 cut(s)	71, 488
BseRI	GAGGAG	1 cut(s)	507
BseXI	GCAGC	2 cut(s)	571, 593
BsgI	GTGCAG	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	58
BsmI	GAATGC	1 cut(s)	226
Bsp1286I	GDGCHC	1 cut(s)	58
Bsp143I	GATC	3 cut(s)	550, 574, 621
Bsp1720I	GCTNAGC	1 cut(s)	474
BspCNI	CTCAG	2 cut(s)	70, 487
BspLI	GGNNCC	2 cut(s)	352, 597
BspMAI	CTGCAG	1 cut(s)	589
BspPI	GGATC	1 cut(s)	629
BspQI	GCTCTTC	1 cut(s)	280
BsrDI	GCAATG	1 cut(s)	275
BssMI	GATC	3 cut(s)	550, 574, 621
Bst6I	CTCTTC	2 cut(s)	280, 525
BstC8I	GCNNGC	1 cut(s)	398
BstDEI	CTNAG	3 cut(s)	57, 438, 474
BstF5I	GGATG	1 cut(s)	711
BstKTI	GATC	3 cut(s)	553, 577, 624
BstMBI	GATC	3 cut(s)	550, 574, 621
BstMWI	GCNNNNNNNGC	2 cut(s)	265, 470
BstNSI	RCATGY	1 cut(s)	400
BstSFI	CTRYAG	1 cut(s)	585
BstV1I	GCAGC	2 cut(s)	571, 593
BstX2I	RGATCY	1 cut(s)	574
BstYI	RGATCY	1 cut(s)	574
BsuI	GTATCC	1 cut(s)	369
BtsCI	GGATG	1 cut(s)	711
Cac8I	GCNNGC	1 cut(s)	398
Cfr13I	GGNCC	3 cut(s)	128, 249, 564
Csp6I	GTAC	3 cut(s)	5, 145, 162
CviAII	CATG	5 cut(s)	65, 397, 508, 524, 683
CviJI	RGCY	8 cut(s)	24, 172, 207, 296, 473, 478, 561, 584
CviKI_1	RGCY	8 cut(s)	24, 172, 207, 296, 473, 478, 561, 584
CviQI	GTAC	3 cut(s)	5, 145, 162
DdeI	CTNAG	3 cut(s)	57, 438, 474
DpnI	GATC	3 cut(s)	552, 576, 623
DpnII	GATC	3 cut(s)	550, 574, 621
Eam1104I	CTCTTC	2 cut(s)	280, 525
EarI	CTCTTC	2 cut(s)	280, 525
Eco47I	GGWCC	3 cut(s)	128, 249, 564
EcoRI	GAATTC	1 cut(s)	645
FaeI	CATG	5 cut(s)	68, 400, 511, 527, 686
FatI	CATG	5 cut(s)	64, 396, 507, 523, 682
Fnu4HI	GCNGC	2 cut(s)	582, 585
FokI	GGATG	1 cut(s)	718
Fsp4HI	GCNGC	2 cut(s)	582, 585
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	2 cut(s)	582, 585
Hin1II	CATG	5 cut(s)	68, 400, 511, 527, 686
HindIII	AAGCTT	3 cut(s)	170, 205, 294
HinfI	GANTC	2 cut(s)	9, 656
Hpy166II	GTNNAC	1 cut(s)	690
Hpy188I	TCNGA	3 cut(s)	93, 555, 618
Hpy188III	TCNNGA	3 cut(s)	19, 191, 548
Hpy8I	GTNNAC	1 cut(s)	690
HpyAV	CCTTC	1 cut(s)	695
HpyF10VI	GCNNNNNNNGC	2 cut(s)	265, 470
HpyF3I	CTNAG	3 cut(s)	57, 438, 474
Hsp92II	CATG	5 cut(s)	68, 400, 511, 527, 686
Kzo9I	GATC	3 cut(s)	550, 574, 621
LguI	GCTCTTC	1 cut(s)	280
LmnI	GCTCC	1 cut(s)	520
LpnPI	CCDG	2 cut(s)	32, 547
Lsp1109I	GCAGC	2 cut(s)	571, 593
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	101
MalI	GATC	3 cut(s)	552, 576, 623
MboI	GATC	3 cut(s)	550, 574, 621
MboII	GAAGA	3 cut(s)	267, 512, 680
MflI	RGATCY	1 cut(s)	574
MhlI	GDGCHC	1 cut(s)	58
MlyI	GAGTC	1 cut(s)	3
MmeI	TCCRAC	1 cut(s)	378
MnlI	CCTC	7 cut(s)	109, 223, 435, 528, 577, 612, 731
MseI	TTAA	2 cut(s)	459, 612
MspA1I	CMGCKG	1 cut(s)	584
Mva1269I	GAATGC	1 cut(s)	226
MwoI	GCNNNNNNNGC	2 cut(s)	265, 470
NdeII	GATC	3 cut(s)	550, 574, 621
NlaIII	CATG	5 cut(s)	68, 400, 511, 527, 686
NlaIV	GGNNCC	2 cut(s)	352, 597
NspI	RCATGY	1 cut(s)	400
PaeI	GCATGC	1 cut(s)	400
PciSI	GCTCTTC	1 cut(s)	280
PctI	GAATGC	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	656
PkrI	GCNGC	2 cut(s)	583, 586
PleI	GAGTC	1 cut(s)	3
PpsI	GAGTC	1 cut(s)	3
PsiI	TTATAA	1 cut(s)	536
PspN4I	GGNNCC	2 cut(s)	352, 597
PspPI	GGNCC	3 cut(s)	128, 249, 564
PstI	CTGCAG	1 cut(s)	589
PsuI	RGATCY	1 cut(s)	574
PvuII	CAGCTG	1 cut(s)	584
RsaI	GTAC	3 cut(s)	6, 146, 163
RsaNI	GTAC	3 cut(s)	5, 145, 162
SapI	GCTCTTC	1 cut(s)	280
SaqAI	TTAA	2 cut(s)	459, 612
SatI	GCNGC	2 cut(s)	582, 585
Sau3AI	GATC	3 cut(s)	550, 574, 621
Sau96I	GGNCC	3 cut(s)	128, 249, 564
ScaI	AGTACT	2 cut(s)	146, 163
SchI	GAGTC	1 cut(s)	3
SduI	GDGCHC	1 cut(s)	58
SfcI	CTRYAG	1 cut(s)	585
SinI	GGWCC	3 cut(s)	128, 249, 564
SphI	GCATGC	1 cut(s)	400
SspI	AATATT	1 cut(s)	457
SspMI	CTAG	1 cut(s)	330
TaqI	TCGA	1 cut(s)	181
TatI	WGTACW	2 cut(s)	144, 161
TfiI	GAWTC	1 cut(s)	656
Tru1I	TTAA	2 cut(s)	459, 612
Tru9I	TTAA	2 cut(s)	459, 612
TseI	GCWGC	2 cut(s)	581, 584
TspDTI	ATGAA	4 cut(s)	53, 267, 496, 512
TspGWI	ACGGA	1 cut(s)	262
VpaK11BI	GGWCC	3 cut(s)	128, 249, 564
XapI	RAATTY	2 cut(s)	199, 645
XceI	RCATGY	1 cut(s)	400
XspI	CTAG	1 cut(s)	330
ZrmI	AGTACT	2 cut(s)	146, 163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.