Rorug01G0234600

Receptor-like protein 12

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
Physical Location & Seq
Forward (+)
33768252 .. 33771441
3190 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0234600.1

Sequence Viewer

Length: 1389 bp
ATGAGCCAGTGTGTTCCCAGCTGGGATCTTGATAACAGTAGTCCATCGCCACCGCCGAGGCTCTCTCTTCGTTCTCACTCCAATTCCACCGCTCCTGATGTTCCCATGTTGGACTATGAGGTAGCAGAGCTGACATGGGAAAATGGCCAGGTGGCCATGCACGGCTTGGGTCTACCGCGCTTGCCTTCCAAACCAGCATCCTGGGACAAGCCACGCGCTACTGGTACTCTGGAGTCCATAGTCAACCAAGCCACCTGTACTTTGCCTCGGTTTTCCAAGCCTCCCTTTGATAACACCATCACTTCTGCCACTGGTGGTGGTGCTAAAGAAGTAGTGACCTGGTTTGATCATCTCCGTCGTGTTGCCACCTCCGGTGCTCCCTCCAACACCACCATGACCATGGACGCGTTGGTCCCTTGCAGGAACAACCAACCTGATGAACCAAACAGTAGCCTTATGATAGACTCTGTAGATACCGTGCCAGGAGTCCTCGGCAGTTCTGGCACGGGCATGATCAATGGGTGCTCCACTCGAGTGGGGTCGTGCAGCGCTACCGCGACCCACAACGAGGACACCCGCCGACTGGGAAAACACAAGGCGGGCGTTGCACGTGTACCTGCTACACCCGAGTGCAGATCCCCCAGCGTGAGCGGTAGTGCCACGTTTGGGATGGATAGCCAGCAAGCCACACTTGATACTAAGGGAAGCGACCGTGACTCAGTTTGTCACAGTAGACCACAGAGAGAGGAAAGCGACGAGGAGGAGAGAAAGAAGCGAAGTACTGGAAAATCCTCAGTTTCTACAAAAAGGAGTAGGGCTGCTGCTATACATAACCAATCTGAACGTAAAAGGAGAGATAAGATCAACCAGAGGATGAAGACGCTGCAGAAGCTGGTCCCAAATTCCAGTAAGACTGATAAAGCTTCAATGCTGGACGAAGTGATTGAATACTTGAAACAATTGCAAGCTCAAGTCCATGTGATAAGCAGAATGAACATACCAGCCATGATGTTGCCGATGGCTATGCAGCAACAACTTCAAATGTCTATGATGGCCCCAAGAAATATGGGCATGGGGATTGGGATGGGAATGGGAATGGGAATGGGAATGGGAATGGGAATGGACATGAACAACATCGGCCGCCCCAACATAGGGGGAGTCCCTCCGGTTCTTCACCCAACTGCATTTATGCCCATGGCTTCATGGGATGGCTCTGCCTGCGGCGCTGAGAGGTTACAAGCTGCTTCAACGACTGTGATGCCTGATCCCTTGCCAGCATTTCTTGCATGCCAATCGCAGCCGATGTCGACCATGGATGCTTACAGCATGATGGCGGCCATGTATCAACAATTCCATCAGCAACCAGCAGCATCTAGTTCTAAGAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

462

Amino Acids

49.8

Weight (kDa)

8.82

Isoelectric Point (pI)

65.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HLH PF00010 277 - 322 4.4e-14 Helix-loop-helix DNA-binding domain
bHLH_SAC51 PF23173 280 - 326 2.1e-08 Transcription factor SAC51 bHLH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 410
Acc36I ACCTGC 1 cut(s) 625
AccBSI CCGCTC 2 cut(s) 92, 651
AccI GTMKAC 3 cut(s) 172, 733, 1307
AccII CGCG 4 cut(s) 178, 216, 407, 557
AclWI GGATC 3 cut(s) 33, 630, 1259
AcoI YGGCCR 4 cut(s) 145, 153, 1138, 1335
AcsI RAATTY 1 cut(s) 901
AcvI CACGTG 1 cut(s) 611
AfaI GTAC 4 cut(s) 226, 259, 615, 781
AfeI AGCGCT 1 cut(s) 550
AfiI CCNNNNNNNGG 5 cut(s) 568, 583, 666, 1151, 1152
AflIII ACRYGT 2 cut(s) 405, 610
AgsI TTSAA 5 cut(s) 927, 947, 955, 1040, 1248
AjnI CCWGG 4 cut(s) 147, 200, 338, 481
AleI CACNNNNGTG 2 cut(s) 533, 628
AluBI AGCT 7 cut(s) 21, 130, 892, 923, 968, 1241, 1386
AluI AGCT 7 cut(s) 21, 130, 892, 923, 968, 1241, 1386
Alw21I GWGCWC 2 cut(s) 379, 527
AlwI GGATC 3 cut(s) 33, 630, 1259
AlwNI CAGNNNCTG 1 cut(s) 892
Ama87I CYCGRG 2 cut(s) 531, 626
Aor51HI AGCGCT 1 cut(s) 550
AoxI GGCC 5 cut(s) 145, 153, 1053, 1138, 1335
ApeKI GCWGC 8 cut(s) 546, 818, 821, 883, 1027, 1241, 1297, 1367
ApoI RAATTY 1 cut(s) 901
AspLEI GCGC 4 cut(s) 180, 218, 551, 1226
AspS9I GGNCC 3 cut(s) 412, 895, 1054
AsuHPI GGTGA 1 cut(s) 1166
AvaI CYCGRG 2 cut(s) 531, 626
AvaII GGWCC 2 cut(s) 412, 895
BalI TGGCCA 2 cut(s) 147, 155
BbrPI CACGTG 1 cut(s) 611
BbsI GAAGAC 1 cut(s) 884
Bbv12I GWGCWC 2 cut(s) 379, 527
BbvI GCAGC 8 cut(s) 558, 805, 808, 870, 1039, 1228, 1309, 1379
BccI CCATC 9 cut(s) 52, 305, 664, 1012, 1045, 1078, 1202, 1324, 1362
BceAI ACGGC 1 cut(s) 178
BcgI CGANNNNNNTGC 6 cut(s) 1006, 1040, 1240, 1274, 1275, 1309
BciT130I CCWGG 4 cut(s) 149, 202, 340, 483
BclI TGATCA 2 cut(s) 346, 513
BfaI CTAG 1 cut(s) 1374
BfmI CTRYAG 2 cut(s) 468, 884
BfoI RGCGCY 2 cut(s) 552, 1227
BfuAI ACCTGC 1 cut(s) 625
BmcAI AGTACT 1 cut(s) 781
Bme1390I CCNGG 4 cut(s) 149, 202, 340, 483
Bme18I GGWCC 2 cut(s) 412, 895
BmeT110I CYCGRG 2 cut(s) 531, 626
BmgT120I GGNCC 3 cut(s) 412, 895, 1054
BmiI GGNNCC 3 cut(s) 414, 897, 1056
BmrFI CCNGG 4 cut(s) 149, 202, 340, 483
BmrI ACTGGG 1 cut(s) 593
BmsI GCATC 4 cut(s) 206, 1248, 1306, 1379
BmuI ACTGGG 1 cut(s) 593
BpiI GAAGAC 1 cut(s) 884
BplI GAGNNNNNCTC 2 cut(s) 49, 81
BpmI CTGGAG 1 cut(s) 251
BpuEI CTTGAG 1 cut(s) 954
BsaAI YACGTR 1 cut(s) 611
BsaJI CCNNGG 7 cut(s) 56, 201, 266, 399, 490, 1194, 1311
BsaWI WCCGGW 2 cut(s) 371, 1165
Bsc4I CCNNNNNNNGG 5 cut(s) 568, 583, 666, 1151, 1152
Bse1I ACTGG 6 cut(s) 7, 226, 316, 588, 787, 906
BseBI CCWGG 4 cut(s) 149, 202, 340, 483
BseDI CCNNGG 7 cut(s) 56, 201, 266, 399, 490, 1194, 1311
BseGI GGATG 6 cut(s) 197, 675, 879, 1089, 1213, 1321
BseLI CCNNNNNNNGG 5 cut(s) 568, 583, 666, 1151, 1152
BseMII CTCAG 3 cut(s) 732, 807, 1218
BseNI ACTGG 6 cut(s) 7, 226, 316, 588, 787, 906
BseRI GAGGAG 2 cut(s) 773, 776
BseX3I CGGCCG 1 cut(s) 1138
BseXI GCAGC 8 cut(s) 558, 805, 808, 870, 1039, 1228, 1309, 1379
BseYI CCCAGC 3 cut(s) 17, 21, 641
BsgI GTGCAG 2 cut(s) 565, 652
Bsh1236I CGCG 4 cut(s) 178, 216, 407, 557
Bsh1285I CGRYCG 2 cut(s) 712, 1141
BshFI GGCC 5 cut(s) 147, 155, 1055, 1140, 1337
BsiEI CGRYCG 2 cut(s) 712, 1141
BsiHKAI GWGCWC 2 cut(s) 379, 527
BsiHKCI CYCGRG 2 cut(s) 531, 626
BsiSI CCGG 2 cut(s) 372, 1166
BslFI GGGAC 4 cut(s) 218, 398, 881, 1145
BslI CCNNNNNNNGG 5 cut(s) 568, 583, 666, 1151, 1152
BsmFI GGGAC 4 cut(s) 218, 398, 881, 1145
BsnI GGCC 5 cut(s) 147, 155, 1055, 1140, 1337
BsoBI CYCGRG 2 cut(s) 531, 626
Bsp1286I GDGCHC 2 cut(s) 379, 527
Bsp143I GATC 6 cut(s) 25, 346, 513, 635, 861, 1264
Bsp19I CCATGG 3 cut(s) 399, 1194, 1311
BspANI GGCC 5 cut(s) 147, 155, 1055, 1140, 1337
BspCNI CTCAG 3 cut(s) 731, 806, 1219
BspFNI CGCG 4 cut(s) 178, 216, 407, 557
BspLI GGNNCC 3 cut(s) 414, 897, 1056
BspMAI CTGCAG 1 cut(s) 888
BspMI ACCTGC 1 cut(s) 625
BspPI GGATC 3 cut(s) 33, 630, 1259
BsrBI CCGCTC 2 cut(s) 92, 651
BsrI ACTGG 6 cut(s) 7, 226, 316, 588, 787, 906
BssECI CCNNGG 7 cut(s) 56, 201, 266, 399, 490, 1194, 1311
BssMI GATC 6 cut(s) 25, 346, 513, 635, 861, 1264
BssT1I CCWWGG 3 cut(s) 399, 1194, 1311
Bst2UI CCWGG 4 cut(s) 149, 202, 340, 483
Bst4CI ACNGT 6 cut(s) 38, 449, 478, 713, 731, 1255
Bst6I CTCTTC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 1283
BstBAI YACGTR 1 cut(s) 611
BstC8I GCNNGC 8 cut(s) 182, 601, 680, 684, 966, 1219, 1275, 1288
BstDEI CTNAG 5 cut(s) 699, 718, 793, 1227, 1380
BstDSI CCRYGG 3 cut(s) 399, 1194, 1311
BstF5I GGATG 6 cut(s) 197, 675, 879, 1089, 1213, 1321
BstFNI CGCG 4 cut(s) 178, 216, 407, 557
BstH2I RGCGCY 2 cut(s) 552, 1227
BstHHI GCGC 4 cut(s) 180, 218, 551, 1226
BstKTI GATC 6 cut(s) 28, 349, 516, 638, 864, 1267
BstMBI GATC 6 cut(s) 25, 346, 513, 635, 861, 1264
BstMCI CGRYCG 2 cut(s) 712, 1141
BstMWI GCNNNNNNNGC 6 cut(s) 501, 605, 889, 1218, 1223, 1283
BstNI CCWGG 4 cut(s) 149, 202, 340, 483
BstNSI RCATGY 1 cut(s) 1290
BstSCI CCNGG 4 cut(s) 147, 200, 338, 481
BstSFI CTRYAG 2 cut(s) 468, 884
BstUI CGCG 4 cut(s) 178, 216, 407, 557
BstV1I GCAGC 8 cut(s) 558, 805, 808, 870, 1039, 1228, 1309, 1379
BstV2I GAAGAC 1 cut(s) 884
BstX2I RGATCY 2 cut(s) 25, 635
BstXI CCANNNNNNTGG 3 cut(s) 201, 400, 535
BstYI RGATCY 2 cut(s) 25, 635
BstZI CGGCCG 1 cut(s) 1138
BsuRI GGCC 5 cut(s) 147, 155, 1055, 1140, 1337
BtgI CCRYGG 3 cut(s) 399, 1194, 1311
BtgZI GCGATG 1 cut(s) 30
BtsCI GGATG 6 cut(s) 197, 675, 879, 1089, 1213, 1321
BtsIMutI CAGTG 2 cut(s) 14, 309
BveI ACCTGC 1 cut(s) 625
Cac8I GCNNGC 8 cut(s) 182, 601, 680, 684, 966, 1219, 1275, 1288
CaiI CAGNNNCTG 1 cut(s) 892
CfoI GCGC 4 cut(s) 180, 218, 551, 1226
Cfr13I GGNCC 3 cut(s) 412, 895, 1054
CseI GACGC 2 cut(s) 413, 889
CsiI ACCWGGT 1 cut(s) 338
Csp6I GTAC 4 cut(s) 225, 258, 614, 780
CviQI GTAC 4 cut(s) 225, 258, 614, 780
DdeI CTNAG 5 cut(s) 699, 718, 793, 1227, 1380
DpnI GATC 6 cut(s) 27, 348, 515, 637, 863, 1266
DpnII GATC 6 cut(s) 25, 346, 513, 635, 861, 1264
DrdI GACNNNNNNGTC 1 cut(s) 410
DseDI GACNNNNNNGTC 1 cut(s) 410
EaeI YGGCCR 4 cut(s) 145, 153, 1138, 1335
EagI CGGCCG 1 cut(s) 1138
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
EclXI CGGCCG 1 cut(s) 1138
Eco130I CCWWGG 3 cut(s) 399, 1194, 1311
Eco47I GGWCC 2 cut(s) 412, 895
Eco47III AGCGCT 1 cut(s) 550
Eco52I CGGCCG 1 cut(s) 1138
Eco72I CACGTG 1 cut(s) 611
Eco88I CYCGRG 2 cut(s) 531, 626
EcoRII CCWGG 4 cut(s) 147, 200, 338, 481
EcoT14I CCWWGG 3 cut(s) 399, 1194, 1311
ErhI CCWWGG 3 cut(s) 399, 1194, 1311
FalI AAGNNNNNCTT 4 cut(s) 269, 301, 675, 707
FaqI GGGAC 4 cut(s) 218, 398, 881, 1145
FauI CCCGC 2 cut(s) 584, 592
FbaI TGATCA 2 cut(s) 346, 513
FblI GTMKAC 3 cut(s) 172, 733, 1307
FokI GGATG 6 cut(s) 184, 682, 886, 1096, 1220, 1328
FspBI CTAG 1 cut(s) 1374
GlaI GCGC 4 cut(s) 179, 217, 550, 1225
GsaI CCCAGC 3 cut(s) 21, 25, 645
GsuI CTGGAG 1 cut(s) 251
HaeII RGCGCY 2 cut(s) 552, 1227
HaeIII GGCC 5 cut(s) 147, 155, 1055, 1140, 1337
HapII CCGG 2 cut(s) 372, 1166
HgaI GACGC 2 cut(s) 413, 889
HhaI GCGC 4 cut(s) 180, 218, 551, 1226
Hin6I GCGC 4 cut(s) 178, 216, 549, 1224
HinP1I GCGC 4 cut(s) 178, 216, 549, 1224
HincII GTYRAC 2 cut(s) 244, 1308
HindII GTYRAC 2 cut(s) 244, 1308
HindIII AAGCTT 1 cut(s) 921
HinfI GANTC 5 cut(s) 233, 464, 486, 716, 1158
HpaII CCGG 2 cut(s) 372, 1166
HphI GGTGA 1 cut(s) 1166
Hpy166II GTNNAC 5 cut(s) 173, 244, 614, 734, 1308
Hpy188I TCNGA 1 cut(s) 841
Hpy188III TCNNGA 3 cut(s) 29, 95, 230
Hpy8I GTNNAC 5 cut(s) 173, 244, 614, 734, 1308
Hpy99I CGWCG 2 cut(s) 360, 758
HpyAV CCTTC 1 cut(s) 195
HpyCH4III ACNGT 6 cut(s) 38, 449, 478, 713, 731, 1255
HpyCH4IV ACGT 3 cut(s) 610, 662, 844
HpyF10VI GCNNNNNNNGC 6 cut(s) 501, 605, 889, 1218, 1223, 1283
HpyF3I CTNAG 5 cut(s) 699, 718, 793, 1227, 1380
HpySE526I ACGT 3 cut(s) 610, 662, 844
HspAI GCGC 4 cut(s) 178, 216, 549, 1224
Ksp22I TGATCA 2 cut(s) 346, 513
Kzo9I GATC 6 cut(s) 25, 346, 513, 635, 861, 1264
LmnI GCTCC 3 cut(s) 97, 382, 530
Lsp1109I GCAGC 8 cut(s) 558, 805, 808, 870, 1039, 1228, 1309, 1379
LweI GCATC 4 cut(s) 206, 1248, 1306, 1379
MabI ACCWGGT 1 cut(s) 338
MaeI CTAG 1 cut(s) 1374
MaeII ACGT 3 cut(s) 610, 662, 844
MaeIII GTNAC 4 cut(s) 334, 713, 725, 1233
MalI GATC 6 cut(s) 27, 348, 515, 637, 863, 1266
MbiI CCGCTC 2 cut(s) 92, 651
MboI GATC 6 cut(s) 25, 346, 513, 635, 861, 1264
MboII GAAGA 3 cut(s) 59, 889, 1163
MfeI CAATTG 1 cut(s) 959
MflI RGATCY 2 cut(s) 25, 635
MhlI GDGCHC 2 cut(s) 379, 527
MlsI TGGCCA 2 cut(s) 147, 155
MluCI AATT 4 cut(s) 82, 901, 959, 1349
MluI ACGCGT 1 cut(s) 405
MluNI TGGCCA 2 cut(s) 147, 155
MlyI GAGTC 5 cut(s) 242, 458, 495, 710, 1167
MmeI TCCRAC 2 cut(s) 90, 408
Mox20I TGGCCA 2 cut(s) 147, 155
MscI TGGCCA 2 cut(s) 147, 155
MslI CAYNNNNRTG 5 cut(s) 392, 398, 509, 533, 628
Msp20I TGGCCA 2 cut(s) 147, 155
MspA1I CMGCKG 1 cut(s) 21
MspI CCGG 2 cut(s) 372, 1166
MspR9I CCNGG 4 cut(s) 149, 202, 340, 483
MunI CAATTG 1 cut(s) 959
MvaI CCWGG 4 cut(s) 149, 202, 340, 483
MvnI CGCG 4 cut(s) 178, 216, 407, 557
MwoI GCNNNNNNNGC 6 cut(s) 501, 605, 889, 1218, 1223, 1283
NcoI CCATGG 3 cut(s) 399, 1194, 1311
NdeII GATC 6 cut(s) 25, 346, 513, 635, 861, 1264
NlaIV GGNNCC 3 cut(s) 414, 897, 1056
NmeAIII GCCGAG 2 cut(s) 81, 471
NmuCI GTSAC 3 cut(s) 334, 713, 725
NspI RCATGY 1 cut(s) 1290
OliI CACNNNNGTG 2 cut(s) 533, 628
PaeI GCATGC 1 cut(s) 1290
PaeR7I CTCGAG 1 cut(s) 531
PcsI WCGNNNNNNNCGW 1 cut(s) 53
PleI GAGTC 5 cut(s) 241, 458, 494, 710, 1166
PmaCI CACGTG 1 cut(s) 611
PmlI CACGTG 1 cut(s) 611
PpsI GAGTC 5 cut(s) 241, 458, 494, 710, 1166
Ppu21I YACGTR 1 cut(s) 611
Psp6I CCWGG 4 cut(s) 147, 200, 338, 481
PspCI CACGTG 1 cut(s) 611
PspFI CCCAGC 3 cut(s) 17, 21, 641
PspGI CCWGG 4 cut(s) 147, 200, 338, 481
PspN4I GGNNCC 3 cut(s) 414, 897, 1056
PspPI GGNCC 3 cut(s) 412, 895, 1054
PspXI VCTCGAGB 1 cut(s) 531
PstI CTGCAG 1 cut(s) 888
PstNI CAGNNNCTG 1 cut(s) 892
PsuI RGATCY 2 cut(s) 25, 635
PvuII CAGCTG 1 cut(s) 21
RsaI GTAC 4 cut(s) 226, 259, 615, 781
RsaNI GTAC 4 cut(s) 225, 258, 614, 780
RseI CAYNNNNRTG 5 cut(s) 392, 398, 509, 533, 628
SalI GTCGAC 1 cut(s) 1306
Sau3AI GATC 6 cut(s) 25, 346, 513, 635, 861, 1264
Sau96I GGNCC 3 cut(s) 412, 895, 1054
ScaI AGTACT 1 cut(s) 781
SchI GAGTC 5 cut(s) 242, 458, 495, 710, 1167
ScrFI CCNGG 4 cut(s) 149, 202, 340, 483
SduI GDGCHC 2 cut(s) 379, 527
SexAI ACCWGGT 1 cut(s) 338
SfaNI GCATC 4 cut(s) 206, 1248, 1306, 1379
SfcI CTRYAG 2 cut(s) 468, 884
Sfr274I CTCGAG 1 cut(s) 531
SinI GGWCC 2 cut(s) 412, 895
SlaI CTCGAG 1 cut(s) 531
SmiMI CAYNNNNRTG 5 cut(s) 392, 398, 509, 533, 628
SmlI CTYRAG 2 cut(s) 531, 969
SmoI CTYRAG 2 cut(s) 531, 969
SphI GCATGC 1 cut(s) 1290
Sse9I AATT 4 cut(s) 82, 901, 959, 1349
SspMI CTAG 1 cut(s) 1374
StyD4I CCNGG 4 cut(s) 147, 200, 338, 481
StyI CCWWGG 3 cut(s) 399, 1194, 1311
TaaI ACNGT 6 cut(s) 38, 449, 478, 713, 731, 1255
TaiI ACGT 3 cut(s) 613, 665, 847
TaqI TCGA 2 cut(s) 532, 1307
TasI AATT 4 cut(s) 82, 901, 959, 1349
TatI WGTACW 2 cut(s) 257, 779
TauI GCSGC 3 cut(s) 1143, 1224, 1337
TscAI CASTG 2 cut(s) 14, 316
TseFI GTSAC 3 cut(s) 334, 713, 725
TseI GCWGC 8 cut(s) 546, 818, 821, 883, 1027, 1241, 1297, 1367
Tsp45I GTSAC 3 cut(s) 334, 713, 725
TspDTI ATGAA 5 cut(s) 453, 890, 1007, 1142, 1191
TspGWI ACGGA 1 cut(s) 344
TspRI CASTG 2 cut(s) 14, 316
VpaK11BI GGWCC 2 cut(s) 412, 895
XapI RAATTY 1 cut(s) 901
XceI RCATGY 1 cut(s) 1290
XcmI CCANNNNNNNNNTGG 4 cut(s) 163, 397, 406, 667
XhoI CTCGAG 1 cut(s) 531
XmiI GTMKAC 3 cut(s) 172, 733, 1307
XspI CTAG 1 cut(s) 1374
ZrmI AGTACT 1 cut(s) 781
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.