Rh3CG121600

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0018507
Physical Location & Seq
Reverse (-)
9866645 .. 9867049
405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG121600.1

Sequence Viewer

Length: 405 bp
ATGACCAAGAATCTGACCAACATAAATCTTTCTCACAATGAGCTAGAAGGTCAAATTAACTCTACTCACTGGCAAAATCTTACAAATCTGGTCAACCTCAACTTGGGTAACAATAAACTGGATGGCAGTATTCCATTGTCTCTATTTTATCTTCCCTCACTGAAGCACCTACTGCTCTCCAACAATCAGTTCTCTGGTCAGTTGCTTGAATTTGCCAATATCGCTCCACTGGACACCCTTGATTTGAGTAGCAACAATTTGAAAGGGCCTTTACCCATGTCTATCTTGACTCTCCGAGGGCTCAAGTTTCTTTCACTTTCTTCTAACAACTTCAGTGGCACCTTCCCTCTTGACAGTATTCAACAGCTCAAAAATCTCTCCAGTCTTGGATCTTTCACACAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

134

Amino Acids

14.75

Weight (kDa)

6.82

Isoelectric Point (pI)

30.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 4 - 64 8.5e-07 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 338
AclWI GGATC 1 cut(s) 397
AcsI RAATTY 1 cut(s) 209
AcuI CTGAAG 2 cut(s) 182, 316
AfiI CCNNNNNNNGG 1 cut(s) 103
AgsI TTSAA 3 cut(s) 209, 262, 362
AjuI GAANNNNNNNTTGG 2 cut(s) 173, 205
AluBI AGCT 2 cut(s) 43, 367
AluI AGCT 2 cut(s) 43, 367
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 1 cut(s) 397
AoxI GGCC 1 cut(s) 266
ApoI RAATTY 1 cut(s) 209
AspS9I GGNCC 1 cut(s) 266
BanI GGYRCC 1 cut(s) 338
BanII GRGCYC 1 cut(s) 303
BccI CCATC 1 cut(s) 116
BcoDI GTCTC 1 cut(s) 144
BfaI CTAG 1 cut(s) 44
BmgT120I GGNCC 1 cut(s) 266
BmiI GGNNCC 1 cut(s) 340
BpmI CTGGAG 1 cut(s) 364
BpuEI CTTGAG 1 cut(s) 287
BsaJI CCNNGG 1 cut(s) 295
Bsc4I CCNNNNNNNGG 1 cut(s) 103
Bse1I ACTGG 4 cut(s) 74, 123, 234, 381
BseDI CCNNGG 1 cut(s) 295
BseGI GGATG 1 cut(s) 127
BseLI CCNNNNNNNGG 1 cut(s) 103
BseNI ACTGG 4 cut(s) 74, 123, 234, 381
BshFI GGCC 1 cut(s) 268
BshNI GGYRCC 1 cut(s) 338
BslI CCNNNNNNNGG 1 cut(s) 103
BsmAI GTCTC 1 cut(s) 144
BsnI GGCC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 303
Bsp143I GATC 1 cut(s) 389
BspANI GGCC 1 cut(s) 268
BspLI GGNNCC 1 cut(s) 340
BspPI GGATC 1 cut(s) 397
BspT107I GGYRCC 1 cut(s) 338
BsrI ACTGG 4 cut(s) 74, 123, 234, 381
BssECI CCNNGG 1 cut(s) 295
BssMI GATC 1 cut(s) 389
Bst4CI ACNGT 1 cut(s) 356
BstAPI GCANNNNNTGC 1 cut(s) 172
BstF5I GGATG 1 cut(s) 127
BstKTI GATC 1 cut(s) 392
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 1 cut(s) 389
BstMWI GCNNNNNNNGC 2 cut(s) 172, 221
BstX2I RGATCY 1 cut(s) 389
BstYI RGATCY 1 cut(s) 389
BsuRI GGCC 1 cut(s) 268
BtsCI GGATG 1 cut(s) 127
BtsIMutI CAGTG 4 cut(s) 67, 158, 227, 340
Cfr13I GGNCC 1 cut(s) 266
CspCI CAANNNNNGTGG 2 cut(s) 316, 351
CviAII CATG 1 cut(s) 277
CviJI RGCY 4 cut(s) 43, 268, 301, 367
CviKI_1 RGCY 4 cut(s) 43, 268, 301, 367
DpnI GATC 1 cut(s) 391
DpnII GATC 1 cut(s) 389
Eco24I GRGCYC 1 cut(s) 303
Eco57I CTGAAG 2 cut(s) 182, 316
EcoO109I RGGNCCY 1 cut(s) 266
EcoT38I GRGCYC 1 cut(s) 303
FaeI CATG 1 cut(s) 280
FaiI YATR 2 cut(s) 23, 278
FatI CATG 1 cut(s) 276
FokI GGATG 1 cut(s) 134
FriOI GRGCYC 1 cut(s) 303
FspBI CTAG 1 cut(s) 44
GsuI CTGGAG 1 cut(s) 364
HaeIII GGCC 1 cut(s) 268
Hin1II CATG 1 cut(s) 280
HincII GTYRAC 1 cut(s) 94
HindII GTYRAC 1 cut(s) 94
HinfI GANTC 2 cut(s) 10, 289
Hpy166II GTNNAC 1 cut(s) 94
Hpy188I TCNGA 2 cut(s) 15, 296
Hpy188III TCNNGA 2 cut(s) 286, 350
Hpy8I GTNNAC 1 cut(s) 94
HpyAV CCTTC 2 cut(s) 41, 352
HpyCH4III ACNGT 1 cut(s) 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 172, 221
Hsp92II CATG 1 cut(s) 280
Kzo9I GATC 1 cut(s) 389
LmnI GCTCC 1 cut(s) 229
LpnPI CCDG 6 cut(s) 55, 74, 104, 180, 215, 394
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 107
MalI GATC 1 cut(s) 391
MboI GATC 1 cut(s) 389
MboII GAAGA 2 cut(s) 143, 312
MflI RGATCY 1 cut(s) 389
MhlI GDGCHC 1 cut(s) 303
MluCI AATT 3 cut(s) 54, 209, 256
MlyI GAGTC 1 cut(s) 283
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 4 cut(s) 107, 166, 290, 357
MseI TTAA 1 cut(s) 57
MwoI GCNNNNNNNGC 2 cut(s) 172, 221
NdeII GATC 1 cut(s) 389
NlaIII CATG 1 cut(s) 280
NlaIV GGNNCC 1 cut(s) 340
PfeI GAWTC 1 cut(s) 10
PleI GAGTC 1 cut(s) 283
PpsI GAGTC 1 cut(s) 283
PspN4I GGNNCC 1 cut(s) 340
PspPI GGNCC 1 cut(s) 266
PsuI RGATCY 1 cut(s) 389
SaqAI TTAA 1 cut(s) 57
Sau3AI GATC 1 cut(s) 389
Sau96I GGNCC 1 cut(s) 266
SchI GAGTC 1 cut(s) 283
SduI GDGCHC 1 cut(s) 303
SetI ASST 6 cut(s) 45, 52, 99, 171, 344, 369
SmlI CTYRAG 1 cut(s) 302
SmoI CTYRAG 1 cut(s) 302
Sse9I AATT 3 cut(s) 54, 209, 256
SspMI CTAG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 356
TasI AATT 3 cut(s) 54, 209, 256
TfiI GAWTC 1 cut(s) 10
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TscAI CASTG 4 cut(s) 74, 165, 234, 340
TspRI CASTG 4 cut(s) 74, 165, 234, 340
XapI RAATTY 1 cut(s) 209
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.