Rorug01G0234500

receptor-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018507
Physical Location & Seq
Reverse (-)
33722930 .. 33725828
2899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0234500.1

Sequence Viewer

Length: 603 bp
ATGCGAAGCCTAAGCCTCTCGTCAAAACCTATCTCAGTCCCAGGGTCCCAGCTCCTTGCTTGTAGAGTTGTTCAAGCAGTGCCGATTAGAAGCAGTACCATGAGTTTGGTTTCTGGTCAGAAGTTCCTTGGCAGTTATCTTGAGACTGGAGTGGCTGCAGCACATGGTATGCTTGGAAAAGGGTGTGCCCTGTTGGGAAACCCAAAATATATGGCTCTTTCATTGACGGAAACAGCAGCACGCCTATTTGTTACTAGATTTTTTAGACATTATATATCTACCGGATGTTTAATCTTATTAGAAGAGGGAGGCACAATGTTCACCTTTGAGGGAAGCAGAAAGGACTGTTCTCTAAAATCCATTCTTAAAGTTCACAGTCCTCAGTTTTACTGGAAAGAGAAACCCATGCTTGATGAATGTGAAGCATTACTGGCTTCAGTAGCAGCTATGCAGTCCCCATCTTTGGAGAATGTCACAAGACATACTGGAAGACCATGGAAAATAATGGTTGAGAATGATGGTTCTCATGGCAAAAAGAGCAAAGCAAATGAAAGCAAGTGCAAAGCTAACAAAATGAGAGTAAAATGGTACAGTTATATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

200

Amino Acids

22.06

Weight (kDa)

9.65

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 420
AfaI GTAC 2 cut(s) 97, 590
AfiI CCNNNNNNNGG 1 cut(s) 463
AgsI TTSAA 1 cut(s) 74
AjnI CCWGG 1 cut(s) 40
AluBI AGCT 3 cut(s) 52, 446, 566
AluI AGCT 3 cut(s) 52, 446, 566
Alw26I GTCTC 1 cut(s) 137
ApeKI GCWGC 4 cut(s) 155, 158, 236, 443
AspS9I GGNCC 1 cut(s) 45
AsuHPI GGTGA 1 cut(s) 313
AvaII GGWCC 1 cut(s) 45
BaeGI GKGCMC 1 cut(s) 190
BbsI GAAGAC 1 cut(s) 496
BbvI GCAGC 4 cut(s) 142, 170, 248, 455
BccI CCATC 2 cut(s) 466, 512
BciT130I CCWGG 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 137
BfaI CTAG 1 cut(s) 255
BfmI CTRYAG 1 cut(s) 156
BisI GCNGC 4 cut(s) 156, 159, 237, 444
BlsI GCNGC 4 cut(s) 157, 160, 238, 445
Bme1390I CCNGG 1 cut(s) 42
Bme18I GGWCC 1 cut(s) 45
BmgT120I GGNCC 1 cut(s) 45
BmiI GGNNCC 2 cut(s) 46, 47
BmrFI CCNGG 1 cut(s) 42
BpiI GAAGAC 1 cut(s) 496
BpmI CTGGAG 1 cut(s) 168
Bpu10I CCTNAGC 1 cut(s) 11
BpuEI CTTGAG 1 cut(s) 161
BsaJI CCNNGG 4 cut(s) 40, 41, 127, 494
BsaWI WCCGGW 1 cut(s) 281
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse1I ACTGG 4 cut(s) 151, 395, 435, 490
BseBI CCWGG 1 cut(s) 42
BseDI CCNNGG 4 cut(s) 40, 41, 127, 494
BseGI GGATG 1 cut(s) 290
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMII CTCAG 2 cut(s) 48, 395
BseNI ACTGG 4 cut(s) 151, 395, 435, 490
BseSI GKGCMC 1 cut(s) 190
BseXI GCAGC 4 cut(s) 142, 170, 248, 455
BseYI CCCAGC 1 cut(s) 48
BsiSI CCGG 1 cut(s) 282
BslFI GGGAC 3 cut(s) 23, 31, 439
BslI CCNNNNNNNGG 1 cut(s) 463
BsmAI GTCTC 1 cut(s) 137
BsmFI GGGAC 3 cut(s) 23, 31, 439
Bsp1286I GDGCHC 1 cut(s) 190
Bsp19I CCATGG 1 cut(s) 494
BspCNI CTCAG 2 cut(s) 47, 394
BspLI GGNNCC 2 cut(s) 46, 47
BspMAI CTGCAG 1 cut(s) 160
BsrI ACTGG 4 cut(s) 151, 395, 435, 490
BssECI CCNNGG 4 cut(s) 40, 41, 127, 494
BssT1I CCWWGG 2 cut(s) 127, 494
Bst2UI CCWGG 1 cut(s) 42
Bst4CI ACNGT 3 cut(s) 347, 377, 593
Bst6I CTCTTC 1 cut(s) 297
BstC8I GCNNGC 1 cut(s) 241
BstDEI CTNAG 3 cut(s) 11, 34, 381
BstDSI CCRYGG 1 cut(s) 494
BstF5I GGATG 1 cut(s) 290
BstMAI GTCTC 1 cut(s) 137
BstMWI GCNNNNNNNGC 3 cut(s) 431, 440, 537
BstNI CCWGG 1 cut(s) 42
BstSCI CCNGG 1 cut(s) 40
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 190
BstV1I GCAGC 4 cut(s) 142, 170, 248, 455
BstV2I GAAGAC 1 cut(s) 496
BstXI CCANNNNNNTGG 1 cut(s) 106
BtgI CCRYGG 1 cut(s) 494
BtsCI GGATG 1 cut(s) 290
BtsI GCAGTG 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 84
Cac8I GCNNGC 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 45
Csp6I GTAC 2 cut(s) 96, 589
CviAII CATG 5 cut(s) 100, 164, 406, 495, 527
CviJI RGCY 8 cut(s) 9, 15, 52, 155, 215, 434, 446, 566
CviKI_1 RGCY 8 cut(s) 9, 15, 52, 155, 215, 434, 446, 566
CviQI GTAC 2 cut(s) 96, 589
DdeI CTNAG 3 cut(s) 11, 34, 381
Eam1104I CTCTTC 1 cut(s) 297
EarI CTCTTC 1 cut(s) 297
Eco130I CCWWGG 2 cut(s) 127, 494
Eco47I GGWCC 1 cut(s) 45
Eco57I CTGAAG 1 cut(s) 420
EcoO109I RGGNCCY 1 cut(s) 45
EcoRII CCWGG 1 cut(s) 40
EcoT14I CCWWGG 2 cut(s) 127, 494
ErhI CCWWGG 2 cut(s) 127, 494
FaeI CATG 5 cut(s) 103, 167, 409, 498, 530
FaqI GGGAC 3 cut(s) 23, 31, 439
FatI CATG 5 cut(s) 99, 163, 405, 494, 526
Fnu4HI GCNGC 4 cut(s) 156, 159, 237, 444
FokI GGATG 1 cut(s) 297
Fsp4HI GCNGC 4 cut(s) 156, 159, 237, 444
FspBI CTAG 1 cut(s) 255
GluI GCNGC 4 cut(s) 156, 159, 237, 444
GsaI CCCAGC 1 cut(s) 52
GsuI CTGGAG 1 cut(s) 168
HapII CCGG 1 cut(s) 282
Hin1II CATG 5 cut(s) 103, 167, 409, 498, 530
HpaII CCGG 1 cut(s) 282
HphI GGTGA 1 cut(s) 313
Hpy166II GTNNAC 2 cut(s) 321, 373
Hpy188I TCNGA 1 cut(s) 120
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 2 cut(s) 321, 373
HpyCH4III ACNGT 3 cut(s) 347, 377, 593
HpyCH4V TGCA 3 cut(s) 158, 451, 561
HpyF10VI GCNNNNNNNGC 3 cut(s) 431, 440, 537
HpyF3I CTNAG 3 cut(s) 11, 34, 381
Hsp92II CATG 5 cut(s) 103, 167, 409, 498, 530
KflI GGGWCCC 1 cut(s) 45
LmnI GCTCC 1 cut(s) 57
Lsp1109I GCAGC 4 cut(s) 142, 170, 248, 455
MaeI CTAG 1 cut(s) 255
MaeIII GTNAC 2 cut(s) 250, 472
MboII GAAGA 2 cut(s) 314, 501
MhlI GDGCHC 1 cut(s) 190
MnlI CCTC 5 cut(s) 26, 298, 302, 322, 390
MseI TTAA 3 cut(s) 290, 366, 601
MspI CCGG 1 cut(s) 282
MspR9I CCNGG 1 cut(s) 42
MvaI CCWGG 1 cut(s) 42
MwoI GCNNNNNNNGC 3 cut(s) 431, 440, 537
NcoI CCATGG 1 cut(s) 494
NlaIII CATG 5 cut(s) 103, 167, 409, 498, 530
NlaIV GGNNCC 2 cut(s) 46, 47
NmuCI GTSAC 1 cut(s) 472
PasI CCCWGGG 1 cut(s) 41
PkrI GCNGC 4 cut(s) 157, 160, 238, 445
PpuMI RGGWCCY 1 cut(s) 45
Psp5II RGGWCCY 1 cut(s) 45
Psp6I CCWGG 1 cut(s) 40
PspFI CCCAGC 1 cut(s) 48
PspGI CCWGG 1 cut(s) 40
PspN4I GGNNCC 2 cut(s) 46, 47
PspPI GGNCC 1 cut(s) 45
PspPPI RGGWCCY 1 cut(s) 45
PstI CTGCAG 1 cut(s) 160
RsaI GTAC 2 cut(s) 97, 590
RsaNI GTAC 2 cut(s) 96, 589
SaqAI TTAA 3 cut(s) 290, 366, 601
SatI GCNGC 4 cut(s) 156, 159, 237, 444
Sau96I GGNCC 1 cut(s) 45
ScrFI CCNGG 1 cut(s) 42
SduI GDGCHC 1 cut(s) 190
SetI ASST 5 cut(s) 31, 54, 326, 448, 568
SfcI CTRYAG 1 cut(s) 156
SinI GGWCC 1 cut(s) 45
SmlI CTYRAG 1 cut(s) 140
SmoI CTYRAG 1 cut(s) 140
SspMI CTAG 1 cut(s) 255
StyD4I CCNGG 1 cut(s) 40
StyI CCWWGG 2 cut(s) 127, 494
TaaI ACNGT 3 cut(s) 347, 377, 593
Tru1I TTAA 3 cut(s) 290, 366, 601
Tru9I TTAA 3 cut(s) 290, 366, 601
TscAI CASTG 1 cut(s) 84
TseFI GTSAC 1 cut(s) 472
TseI GCWGC 4 cut(s) 155, 158, 236, 443
Tsp45I GTSAC 1 cut(s) 472
TspDTI ATGAA 3 cut(s) 210, 429, 564
TspGWI ACGGA 1 cut(s) 242
TspRI CASTG 1 cut(s) 84
VpaK11BI GGWCC 1 cut(s) 45
XspI CTAG 1 cut(s) 255
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.