Rorug01G0234700

Receptor-like protein 12

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018507
Physical Location & Seq
Forward (+)
33820967 .. 33822335
1369 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0234700.1

Sequence Viewer

Length: 684 bp
ATGGTTTCCTCAACATCCCTTGTAATCTCTCCAAGAAAGTTCAGATCAGATTTGTACTCCTATCCATACCAAGCCGATTCAAACACCCCTTTGGTGGTTAATGTTCTTGCTTCTCTTATTGAGAGAAACATGGCCAGGAACCAAAGGATTTCAAAGAACTGCTGCCCTTGGTACTTGTCCAAAGACATGAAGAAGACTCGGATTTTCGTGTGCCACGAGACTCCGGACATGACGATTCAGTCGTATTTGGAGAGAATTTTCAGGTACACAAGAGCCGGGCCGTCTGTTTATGTGGTCGCTTATGTATATATCGATCGGTTTTGCCAGAATAATCCTGGTTTTCGAATCAATGTCACAAATGTGCACAGGTTACTCATCACAACTATAATGGTGGCTTCGAAATATGTAGAAGACATGAATTACAGAAATTCTTACTTTGCAAGAGTCGGGGGATTAACAACAAACGAGCTGAACAAGTTGGAGCTTGAGTTTTTGTTCTTGATGGGATTCAAGTTACATGTGAATGTGAGTGTGTTTGAGAGCTACTGTTGTCATTTAGAAAGAGAAGTCAGTATTGGAGGAGGCTACCAAATTGAGAGCACATTGAGATGTGCAGAAGAAATCAAAACAAGGCAAGATGAAGATAGAAGATATAACCAGTGTGCTGCAGGTGTTTTGTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009888 GO:0010073 GO:0032501 GO:0032502 GO:0048507 GO:0048856
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_6 LRR_8

Protein Analysis

227

Amino Acids

26.38

Weight (kDa)

8.86

Isoelectric Point (pI)

31.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Cyclin PF08613 35 - 172 9.5e-35 Cyclin
Cyclin_N PF00134 79 - 172 3.7e-09 Cyclin, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 659
AasI GACNNNNNNGTC 1 cut(s) 238
Acc36I ACCTGC 1 cut(s) 659
AccIII TCCGGA 1 cut(s) 223
AcoI YGGCCR 1 cut(s) 132
AcsI RAATTY 2 cut(s) 255, 427
AfaI GTAC 3 cut(s) 56, 173, 266
AfiI CCNNNNNNNGG 1 cut(s) 94
AflIII ACRYGT 1 cut(s) 517
AgsI TTSAA 3 cut(s) 81, 153, 511
AjnI CCWGG 2 cut(s) 134, 334
AjuI GAANNNNNNNTTGG 2 cut(s) 558, 590
AleI CACNNNNGTG 1 cut(s) 359
AluBI AGCT 3 cut(s) 469, 484, 543
AluI AGCT 3 cut(s) 469, 484, 543
Alw21I GWGCWC 2 cut(s) 366, 602
Alw26I GTCTC 1 cut(s) 212
Alw44I GTGCAC 1 cut(s) 362
Aor13HI TCCGGA 1 cut(s) 223
AoxI GGCC 2 cut(s) 132, 278
ApaLI GTGCAC 1 cut(s) 362
ApeKI GCWGC 2 cut(s) 162, 665
ApoI RAATTY 2 cut(s) 255, 427
AspS9I GGNCC 1 cut(s) 278
AsuC2I CCSGG 1 cut(s) 277
AsuII TTCGAA 2 cut(s) 343, 398
BaeGI GKGCMC 1 cut(s) 366
BalI TGGCCA 1 cut(s) 134
BauI CACGAG 1 cut(s) 215
BbsI GAAGAC 2 cut(s) 200, 417
Bbv12I GWGCWC 2 cut(s) 366, 602
BbvI GCAGC 2 cut(s) 149, 652
BccI CCATC 1 cut(s) 496
BceAI ACGGC 1 cut(s) 265
BciT130I CCWGG 2 cut(s) 136, 336
BcnI CCSGG 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 212
BfmI CTRYAG 1 cut(s) 666
BfuAI ACCTGC 1 cut(s) 659
BisI GCNGC 2 cut(s) 163, 666
BlsI GCNGC 2 cut(s) 164, 667
Bme1390I CCNGG 3 cut(s) 136, 277, 336
BmgT120I GGNCC 1 cut(s) 278
BmiI GGNNCC 1 cut(s) 140
BmrFI CCNGG 3 cut(s) 136, 277, 336
BpiI GAAGAC 2 cut(s) 200, 417
Bpu14I TTCGAA 2 cut(s) 343, 398
BpuEI CTTGAG 1 cut(s) 506
BpuMI CCSGG 1 cut(s) 277
Bsa29I ATCGAT 1 cut(s) 312
BsaJI CCNNGG 1 cut(s) 167
BsaWI WCCGGW 1 cut(s) 223
BsaXI ACNNNNNCTCC 2 cut(s) 473, 503
Bsc4I CCNNNNNNNGG 1 cut(s) 94
Bse1I ACTGG 1 cut(s) 658
BseAI TCCGGA 1 cut(s) 223
BseBI CCWGG 2 cut(s) 136, 336
BseCI ATCGAT 1 cut(s) 312
BseDI CCNNGG 1 cut(s) 167
BseGI GGATG 1 cut(s) 14
BseLI CCNNNNNNNGG 1 cut(s) 94
BseNI ACTGG 1 cut(s) 658
BseRI GAGGAG 1 cut(s) 594
BseSI GKGCMC 1 cut(s) 366
BseXI GCAGC 2 cut(s) 149, 652
BsgI GTGCAG 1 cut(s) 633
Bsh1285I CGRYCG 1 cut(s) 316
BshFI GGCC 2 cut(s) 134, 280
BshVI ATCGAT 1 cut(s) 312
BsiEI CGRYCG 1 cut(s) 316
BsiHKAI GWGCWC 2 cut(s) 366, 602
BsiSI CCGG 2 cut(s) 224, 276
BslI CCNNNNNNNGG 1 cut(s) 94
BsmAI GTCTC 1 cut(s) 212
BsnI GGCC 2 cut(s) 134, 280
Bsp119I TTCGAA 2 cut(s) 343, 398
Bsp1286I GDGCHC 2 cut(s) 366, 602
Bsp13I TCCGGA 1 cut(s) 223
Bsp143I GATC 2 cut(s) 44, 313
BspANI GGCC 2 cut(s) 134, 280
BspDI ATCGAT 1 cut(s) 312
BspEI TCCGGA 1 cut(s) 223
BspLI GGNNCC 1 cut(s) 140
BspMAI CTGCAG 1 cut(s) 670
BspMI ACCTGC 1 cut(s) 659
BspT104I TTCGAA 2 cut(s) 343, 398
BsrI ACTGG 1 cut(s) 658
BssECI CCNNGG 1 cut(s) 167
BssMI GATC 2 cut(s) 44, 313
BssSI CACGAG 1 cut(s) 215
BssT1I CCWWGG 1 cut(s) 167
Bst2BI CACGAG 1 cut(s) 215
Bst2UI CCWGG 2 cut(s) 136, 336
Bst4CI ACNGT 1 cut(s) 548
BstBI TTCGAA 2 cut(s) 343, 398
BstF5I GGATG 1 cut(s) 14
BstKTI GATC 2 cut(s) 47, 316
BstMAI GTCTC 1 cut(s) 212
BstMBI GATC 2 cut(s) 44, 313
BstMCI CGRYCG 1 cut(s) 316
BstNI CCWGG 2 cut(s) 136, 336
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 3 cut(s) 134, 275, 334
BstSFI CTRYAG 1 cut(s) 666
BstSLI GKGCMC 1 cut(s) 366
BstV1I GCAGC 2 cut(s) 149, 652
BstV2I GAAGAC 2 cut(s) 200, 417
Bsu15I ATCGAT 1 cut(s) 312
BsuRI GGCC 2 cut(s) 134, 280
BsuTUI ATCGAT 1 cut(s) 312
BtsCI GGATG 1 cut(s) 14
BtsIMutI CAGTG 1 cut(s) 665
BveI ACCTGC 1 cut(s) 659
Cfr13I GGNCC 1 cut(s) 278
ClaI ATCGAT 1 cut(s) 312
Csp6I GTAC 3 cut(s) 55, 172, 265
CviAII CATG 5 cut(s) 130, 187, 229, 415, 518
CviJI RGCY 9 cut(s) 74, 134, 275, 280, 395, 469, 484, 543, 585
CviKI_1 RGCY 9 cut(s) 74, 134, 275, 280, 395, 469, 484, 543, 585
CviQI GTAC 3 cut(s) 55, 172, 265
DpnI GATC 2 cut(s) 46, 315
DpnII GATC 2 cut(s) 44, 313
DrdI GACNNNNNNGTC 1 cut(s) 238
DseDI GACNNNNNNGTC 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 132
Eco130I CCWWGG 1 cut(s) 167
EcoRII CCWGG 2 cut(s) 134, 334
EcoT14I CCWWGG 1 cut(s) 167
ErhI CCWWGG 1 cut(s) 167
FaeI CATG 5 cut(s) 133, 190, 232, 418, 521
FatI CATG 5 cut(s) 129, 186, 228, 414, 517
Fnu4HI GCNGC 2 cut(s) 163, 666
Fsp4HI GCNGC 2 cut(s) 163, 666
GluI GCNGC 2 cut(s) 163, 666
HaeIII GGCC 2 cut(s) 134, 280
HapII CCGG 2 cut(s) 224, 276
Hin1II CATG 5 cut(s) 133, 190, 232, 418, 521
HinfI GANTC 7 cut(s) 77, 196, 220, 235, 345, 444, 507
HpaII CCGG 2 cut(s) 224, 276
Hpy166II GTNNAC 2 cut(s) 267, 364
Hpy188I TCNGA 3 cut(s) 44, 49, 201
Hpy188III TCNNGA 2 cut(s) 224, 499
Hpy8I GTNNAC 2 cut(s) 267, 364
HpyCH4III ACNGT 1 cut(s) 548
HpyCH4V TGCA 4 cut(s) 364, 440, 614, 668
Hsp92II CATG 5 cut(s) 133, 190, 232, 418, 521
Kpn2I TCCGGA 1 cut(s) 223
Kzo9I GATC 2 cut(s) 44, 313
LmnI GCTCC 1 cut(s) 481
Lsp1109I GCAGC 2 cut(s) 149, 652
MaeIII GTNAC 3 cut(s) 352, 369, 513
MalI GATC 2 cut(s) 46, 315
MboI GATC 2 cut(s) 44, 313
MboII GAAGA 6 cut(s) 202, 205, 422, 629, 653, 660
MhlI GDGCHC 2 cut(s) 366, 602
MlsI TGGCCA 1 cut(s) 134
MluCI AATT 4 cut(s) 255, 418, 427, 591
MluNI TGGCCA 1 cut(s) 134
MlyI GAGTC 3 cut(s) 190, 214, 453
MmeI TCCRAC 1 cut(s) 459
MnlI CCTC 3 cut(s) 19, 572, 575
Mox20I TGGCCA 1 cut(s) 134
MroI TCCGGA 1 cut(s) 223
MscI TGGCCA 1 cut(s) 134
MseI TTAA 2 cut(s) 99, 455
MslI CAYNNNNRTG 3 cut(s) 359, 522, 607
Msp20I TGGCCA 1 cut(s) 134
MspI CCGG 2 cut(s) 224, 276
MspR9I CCNGG 3 cut(s) 136, 277, 336
MvaI CCWGG 2 cut(s) 136, 336
NciI CCSGG 1 cut(s) 277
NdeII GATC 2 cut(s) 44, 313
NlaIII CATG 5 cut(s) 133, 190, 232, 418, 521
NlaIV GGNNCC 1 cut(s) 140
NmuCI GTSAC 1 cut(s) 352
NspI RCATGY 1 cut(s) 521
NspV TTCGAA 2 cut(s) 343, 398
OliI CACNNNNGTG 1 cut(s) 359
PaqCI CACCTGC 1 cut(s) 659
PciI ACATGT 1 cut(s) 517
PcsI WCGNNNNNNNCGW 2 cut(s) 213, 239
PfeI GAWTC 4 cut(s) 77, 235, 345, 507
PkrI GCNGC 2 cut(s) 164, 667
Ple19I CGATCG 1 cut(s) 316
PleI GAGTC 3 cut(s) 190, 214, 452
PpsI GAGTC 3 cut(s) 190, 214, 452
PscI ACATGT 1 cut(s) 517
Psp6I CCWGG 2 cut(s) 134, 334
PspGI CCWGG 2 cut(s) 134, 334
PspN4I GGNNCC 1 cut(s) 140
PspPI GGNCC 1 cut(s) 278
PstI CTGCAG 1 cut(s) 670
PvuI CGATCG 1 cut(s) 316
RsaI GTAC 3 cut(s) 56, 173, 266
RsaNI GTAC 3 cut(s) 55, 172, 265
RseI CAYNNNNRTG 3 cut(s) 359, 522, 607
SaqAI TTAA 2 cut(s) 99, 455
SatI GCNGC 2 cut(s) 163, 666
Sau3AI GATC 2 cut(s) 44, 313
Sau96I GGNCC 1 cut(s) 278
SchI GAGTC 3 cut(s) 190, 214, 453
ScrFI CCNGG 3 cut(s) 136, 277, 336
SduI GDGCHC 2 cut(s) 366, 602
SetI ASST 6 cut(s) 266, 371, 471, 486, 545, 673
SfcI CTRYAG 1 cut(s) 666
SfuI TTCGAA 2 cut(s) 343, 398
SmiMI CAYNNNNRTG 3 cut(s) 359, 522, 607
SmlI CTYRAG 1 cut(s) 485
SmoI CTYRAG 1 cut(s) 485
Sse9I AATT 4 cut(s) 255, 418, 427, 591
StyD4I CCNGG 3 cut(s) 134, 275, 334
StyI CCWWGG 1 cut(s) 167
TaaI ACNGT 1 cut(s) 548
TaqI TCGA 3 cut(s) 312, 343, 398
TasI AATT 4 cut(s) 255, 418, 427, 591
TatI WGTACW 1 cut(s) 54
TfiI GAWTC 4 cut(s) 77, 235, 345, 507
Tru1I TTAA 2 cut(s) 99, 455
Tru9I TTAA 2 cut(s) 99, 455
TscAI CASTG 1 cut(s) 665
TseFI GTSAC 1 cut(s) 352
TseI GCWGC 2 cut(s) 162, 665
Tsp45I GTSAC 1 cut(s) 352
TspDTI ATGAA 3 cut(s) 203, 431, 654
TspRI CASTG 1 cut(s) 665
VneI GTGCAC 1 cut(s) 362
XapI RAATTY 2 cut(s) 255, 427
XceI RCATGY 1 cut(s) 521
XcmI CCANNNNNNNNNTGG 1 cut(s) 332
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.