Rmu_sc0001360.1_g000004

Polysaccharide biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001360.1
OG0018180
Physical Location & Seq
Reverse (-)
9406 .. 10411
1006 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 471 bp
atggaagtccggtttgaaacagagcaggtgagaaatgggcttccccggacgagaaagaatctgagattggaggaggaaaactccagagtgatgttgagatcattgaaagaagaaattacatgtctttcttgtgggttttgggtgtttgagatggtgaggtcagcgttgaagacatggtacaagaaaccagatggggtcaagttttggaagaaagagttcgtggggagtggggttttgaggaggttttgggagaagaaaggaaaagggtcagggaggactgtggattgggtttgggggaagaggaaagggatggtggtgatggagatggggaaggtggaggtggaggtttatagggtttggatttggcaaggtaggagtgtttatggtctaaggcatcagtgggtctatgtgtgtgagaaggccaagcaggagctggattataatcctagaagcttgaagaaaggattatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00900 ko00909 ko01130 map00900 map00909 map01130
Pfam Domains
Protein Families
Epimerase

Protein Analysis

156

Amino Acids

18.71

Weight (kDa)

9.97

Isoelectric Point (pI)

34.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 441
AarI CACCTGC 1 cut(s) 16
Acc36I ACCTGC 1 cut(s) 16
AfaI GTAC 1 cut(s) 179
AflIII ACRYGT 1 cut(s) 119
AgsI TTSAA 4 cut(s) 17, 106, 169, 457
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 2 cut(s) 433, 453
AluI AGCT 2 cut(s) 433, 453
AlwNI CAGNNNCTG 1 cut(s) 433
AoxI GGCC 1 cut(s) 420
Asp700I GAANNNNTTC 1 cut(s) 215
AsuC2I CCSGG 1 cut(s) 46
AsuHPI GGTGA 3 cut(s) 40, 166, 328
BarI GAAGNNNNNNTAC 2 cut(s) 161, 193
BbsI GAAGAC 1 cut(s) 176
BccI CCATC 5 cut(s) 145, 185, 304, 313, 319
BcnI CCSGG 1 cut(s) 46
BfaI CTAG 1 cut(s) 447
BfuAI ACCTGC 1 cut(s) 16
Bme1390I CCNGG 1 cut(s) 46
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 1 cut(s) 403
BpiI GAAGAC 1 cut(s) 176
BplI GAGNNNNNCTC 2 cut(s) 65, 97
BpmI CTGGAG 1 cut(s) 67
BpuMI CCSGG 1 cut(s) 46
BsaBI GATNNNNATC 1 cut(s) 441
BsaJI CCNNGG 1 cut(s) 44
BsaWI WCCGGW 1 cut(s) 9
Bse8I GATNNNNATC 1 cut(s) 441
BseDI CCNNGG 1 cut(s) 44
BseGI GGATG 1 cut(s) 315
BseJI GATNNNNATC 1 cut(s) 441
BseMII CTCAG 1 cut(s) 53
BseRI GAGGAG 2 cut(s) 86, 253
BshFI GGCC 1 cut(s) 422
BsiSI CCGG 2 cut(s) 10, 46
BsnI GGCC 1 cut(s) 422
Bsp143I GATC 1 cut(s) 98
BspANI GGCC 1 cut(s) 422
BspCNI CTCAG 1 cut(s) 54
BspMI ACCTGC 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 44
BssMI GATC 1 cut(s) 98
Bst4CI ACNGT 1 cut(s) 280
Bst6I CTCTTC 1 cut(s) 293
BstDEI CTNAG 2 cut(s) 62, 389
BstF5I GGATG 1 cut(s) 315
BstKTI GATC 1 cut(s) 101
BstMBI GATC 1 cut(s) 98
BstNSI RCATGY 1 cut(s) 123
BstSCI CCNGG 1 cut(s) 44
BstV2I GAAGAC 1 cut(s) 176
BsuRI GGCC 1 cut(s) 422
BtsCI GGATG 1 cut(s) 315
BtsIMutI CAGTG 1 cut(s) 404
BveI ACCTGC 1 cut(s) 16
CaiI CAGNNNCTG 1 cut(s) 433
Csp6I GTAC 1 cut(s) 178
CviAII CATG 2 cut(s) 120, 174
CviJI RGCY 4 cut(s) 40, 422, 433, 453
CviKI_1 RGCY 4 cut(s) 40, 422, 433, 453
CviQI GTAC 1 cut(s) 178
DdeI CTNAG 2 cut(s) 62, 389
DpnI GATC 1 cut(s) 100
DpnII GATC 1 cut(s) 98
Eam1104I CTCTTC 1 cut(s) 293
EarI CTCTTC 1 cut(s) 293
FaeI CATG 2 cut(s) 123, 177
FaiI YATR 7 cut(s) 121, 175, 351, 384, 408, 441, 469
FatI CATG 2 cut(s) 119, 173
FokI GGATG 1 cut(s) 322
FspBI CTAG 1 cut(s) 447
GsuI CTGGAG 1 cut(s) 67
HaeIII GGCC 1 cut(s) 422
HapII CCGG 2 cut(s) 10, 46
Hin1II CATG 2 cut(s) 123, 177
HindIII AAGCTT 1 cut(s) 451
HinfI GANTC 1 cut(s) 58
HpaII CCGG 2 cut(s) 10, 46
HphI GGTGA 3 cut(s) 40, 166, 328
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 84
HpyAV CCTTC 2 cut(s) 325, 412
HpyCH4III ACNGT 1 cut(s) 280
HpyF3I CTNAG 2 cut(s) 62, 389
Hsp92II CATG 2 cut(s) 123, 177
Kzo9I GATC 1 cut(s) 98
LmnI GCTCC 1 cut(s) 430
LpnPI CCDG 8 cut(s) 11, 23, 59, 97, 201, 255, 413, 419
LweI GCATC 1 cut(s) 403
MaeI CTAG 1 cut(s) 447
MalI GATC 1 cut(s) 100
MboI GATC 1 cut(s) 98
MboII GAAGA 6 cut(s) 122, 181, 220, 265, 310, 469
MluCI AATT 1 cut(s) 114
MnlI CCTC 9 cut(s) 64, 67, 150, 231, 234, 267, 294, 331, 337
MroXI GAANNNNTTC 1 cut(s) 215
MspI CCGG 2 cut(s) 10, 46
MspR9I CCNGG 1 cut(s) 46
NciI CCSGG 1 cut(s) 46
NdeII GATC 1 cut(s) 98
NlaIII CATG 2 cut(s) 123, 177
NspI RCATGY 1 cut(s) 123
PaqCI CACCTGC 1 cut(s) 16
PciI ACATGT 1 cut(s) 119
PdmI GAANNNNTTC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 58
PscI ACATGT 1 cut(s) 119
PsiI TTATAA 1 cut(s) 441
PstNI CAGNNNCTG 1 cut(s) 433
RsaI GTAC 1 cut(s) 179
RsaNI GTAC 1 cut(s) 178
Sau3AI GATC 1 cut(s) 98
ScrFI CCNGG 1 cut(s) 46
SetI ASST 9 cut(s) 30, 161, 245, 336, 342, 348, 373, 435, 455
SfaNI GCATC 1 cut(s) 403
Sse9I AATT 1 cut(s) 114
SspMI CTAG 1 cut(s) 447
StyD4I CCNGG 1 cut(s) 44
TaaI ACNGT 1 cut(s) 280
TasI AATT 1 cut(s) 114
TfiI GAWTC 1 cut(s) 58
TscAI CASTG 1 cut(s) 404
TspRI CASTG 1 cut(s) 404
XceI RCATGY 1 cut(s) 123
XcmI CCANNNNNNNNNTGG 1 cut(s) 430
XmnI GAANNNNTTC 1 cut(s) 215
XspI CTAG 1 cut(s) 447
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.