Rmu_sc0001372.1_g000010

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001372.1
OG0013638
Physical Location & Seq
Forward (+)
50236 .. 53163
2928 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 978 bp
atgaaccagcaactgggagcgactatgagcaggcagcgttccgatgcaagaaaatcacatagattactaaagggtcttacaaagccccctccaacccatcacagaagtctgtttctcagaactgcaaagaagttgaatttagtaaagcgcattgagtataacccatttggttcatcaaagcaacaaaaccaagaaccctatggtttgaattcaccactttcattgccaccttatgattcactagctccactttccttgcctgatgcaaatgctcctccattttgtacttacccacccaacactccacaaaccccctctacaactactccaacacccaccacatcatcacccccaagcccacaatcaccttttctttacgtgccaccaattcttcccatgcaaagcccaccactagtcccaataggcactatcccaggcccaccacaatctatctccgtacctgggccgccggagtctataccgagtccgaccatctacttcccaggcccacctcaatctatcccgacccctaatccacccgaaacagtcccaagcccaccggattacgagcccagcccgccatatttttctattccaagcccaccttctttcgtcccatctcctccctatgggttcccaccaagcccaccagtgttcgaaccccctgttgtgttccctccaccaactactccgccgagtccaaaaaaaggcccgacaacggccctttggtgcgtggccaagccgtcggtgcccgacccaatcatccaagaagccatgaactacgcttgcgggtctggagcagattgtgatgccattctgcccaatgggtcatgctttgagcccaacacattgtatgcccatgcttcgtttgccttcaatagttactggcaaaggaccagggttgctggtagcacctgttcgtttggaggaacagccatactagtcacagttgatccaagtaagtttcccaacatctaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

325

Amino Acids

34.77

Weight (kDa)

8.69

Isoelectric Point (pI)

86.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 242 - 312 3.2e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013638)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g14440
malus_domestica MD05G1236800.v1.1 MD10G1213700.v1.1
prunus_persica Prupe.4G129300_v2.0.a1
pyrus_communis pycom05g21370 pycom10g18040
rosa_chinensis RchiOBHm_Chr5g0023751
rosa_laevigata RLG00000032734
rosa_multiflora Rmu_sc0001372.1_g000010
rosa_roxburghii Rroxscaffold_1G00055440
rosa_rugosa Rorug05G0079500
rosa_samantha Rh5AG169400 Rh5BG166800 Rh5CG182400 Rh5DG168700
rosa_wichuraiana Rw0G001570 Rw0G005000 Rw5G015320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 748
AccB7I CCANNNNNTGG 1 cut(s) 13
AciI CCGC 4 cut(s) 467, 578, 692, 789
AclWI GGATC 1 cut(s) 947
AcoI YGGCCR 1 cut(s) 735
AcsI RAATTY 2 cut(s) 136, 208
AfaI GTAC 2 cut(s) 286, 459
AfiI CCNNNNNNNGG 5 cut(s) 13, 462, 629, 707, 718
AgsI TTSAA 3 cut(s) 136, 208, 877
AhlI ACTAGT 2 cut(s) 412, 940
AjnI CCWGG 4 cut(s) 433, 460, 502, 896
AjuI GAANNNNNNNTTGG 2 cut(s) 589, 621
AluBI AGCT 1 cut(s) 245
AluI AGCT 1 cut(s) 245
AlwI GGATC 1 cut(s) 947
AlwNI CAGNNNCTG 1 cut(s) 13
AoxI GGCC 6 cut(s) 436, 464, 505, 709, 720, 735
ApeKI GCWGC 1 cut(s) 34
ApoI RAATTY 2 cut(s) 136, 208
AspLEI GCGC 1 cut(s) 150
AspS9I GGNCC 6 cut(s) 437, 464, 506, 710, 721, 894
AsuHPI GGTGA 3 cut(s) 204, 339, 357
AsuII TTCGAA 1 cut(s) 657
AvaII GGWCC 1 cut(s) 894
BaeGI GKGCMC 1 cut(s) 753
BalI TGGCCA 1 cut(s) 737
BanI GGYRCC 1 cut(s) 748
BanII GRGCYC 2 cut(s) 573, 843
BbvI GCAGC 1 cut(s) 46
BccI CCATC 3 cut(s) 105, 500, 625
BceAI ACGGC 2 cut(s) 727, 735
BciT130I CCWGG 4 cut(s) 435, 462, 504, 898
BcuI ACTAGT 2 cut(s) 412, 940
BfaI CTAG 3 cut(s) 242, 413, 941
BisI GCNGC 2 cut(s) 35, 467
BlsI GCNGC 2 cut(s) 36, 468
Bme1390I CCNGG 4 cut(s) 435, 462, 504, 898
Bme18I GGWCC 1 cut(s) 894
BmgT120I GGNCC 6 cut(s) 437, 464, 506, 710, 721, 894
BmiI GGNNCC 2 cut(s) 635, 750
BmrFI CCNGG 4 cut(s) 435, 462, 504, 898
BmrI ACTGGG 1 cut(s) 23
BmsI GCATC 3 cut(s) 34, 253, 799
BmuI ACTGGG 1 cut(s) 23
BpmI CTGGAG 1 cut(s) 816
Bpu14I TTCGAA 1 cut(s) 657
BsaAI YACGTR 1 cut(s) 379
BsaJI CCNNGG 4 cut(s) 433, 461, 502, 897
BsaWI WCCGGW 1 cut(s) 559
BsaXI ACNNNNNCTCC 2 cut(s) 310, 340
Bsc4I CCNNNNNNNGG 5 cut(s) 13, 462, 629, 707, 718
Bse1I ACTGG 3 cut(s) 18, 650, 890
Bse3DI GCAATG 1 cut(s) 221
BseBI CCWGG 4 cut(s) 435, 462, 504, 898
BseDI CCNNGG 4 cut(s) 433, 461, 502, 897
BseGI GGATG 1 cut(s) 762
BseLI CCNNNNNNNGG 5 cut(s) 13, 462, 629, 707, 718
BseMI GCAATG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 130
BseNI ACTGG 3 cut(s) 18, 650, 890
BseRI GAGGAG 2 cut(s) 264, 612
BseSI GKGCMC 1 cut(s) 753
BseXI GCAGC 1 cut(s) 46
BseYI CCCAGC 1 cut(s) 572
BshFI GGCC 6 cut(s) 438, 466, 507, 711, 722, 737
BshNI GGYRCC 1 cut(s) 748
BsiSI CCGG 2 cut(s) 470, 560
BslFI GGGAC 3 cut(s) 401, 533, 599
BslI CCNNNNNNNGG 5 cut(s) 13, 462, 629, 707, 718
BsmFI GGGAC 3 cut(s) 401, 533, 599
BsnI GGCC 6 cut(s) 438, 466, 507, 711, 722, 737
Bsp119I TTCGAA 1 cut(s) 657
Bsp1286I GDGCHC 3 cut(s) 573, 753, 843
Bsp143I GATC 1 cut(s) 952
BspACI CCGC 4 cut(s) 467, 578, 692, 789
BspANI GGCC 6 cut(s) 438, 466, 507, 711, 722, 737
BspCNI CTCAG 1 cut(s) 129
BspLI GGNNCC 2 cut(s) 635, 750
BspPI GGATC 1 cut(s) 947
BspT104I TTCGAA 1 cut(s) 657
BspT107I GGYRCC 1 cut(s) 748
BsrDI GCAATG 1 cut(s) 221
BsrI ACTGG 3 cut(s) 18, 650, 890
BssECI CCNNGG 4 cut(s) 433, 461, 502, 897
BssMI GATC 1 cut(s) 952
Bst2UI CCWGG 4 cut(s) 435, 462, 504, 898
Bst4CI ACNGT 2 cut(s) 547, 949
BstBAI YACGTR 1 cut(s) 379
BstBI TTCGAA 1 cut(s) 657
BstC8I GCNNGC 3 cut(s) 32, 578, 787
BstDEI CTNAG 1 cut(s) 116
BstF5I GGATG 1 cut(s) 762
BstHHI GCGC 1 cut(s) 150
BstKTI GATC 1 cut(s) 955
BstMBI GATC 1 cut(s) 952
BstMWI GCNNNNNNNGC 3 cut(s) 577, 748, 869
BstNI CCWGG 4 cut(s) 435, 462, 504, 898
BstSCI CCNGG 4 cut(s) 433, 460, 502, 896
BstSLI GKGCMC 1 cut(s) 753
BstV1I GCAGC 1 cut(s) 46
BsuRI GGCC 6 cut(s) 438, 466, 507, 711, 722, 737
BtsCI GGATG 1 cut(s) 762
BtsIMutI CAGTG 1 cut(s) 657
Cac8I GCNNGC 3 cut(s) 32, 578, 787
CaiI CAGNNNCTG 1 cut(s) 13
CfoI GCGC 1 cut(s) 150
Cfr13I GGNCC 6 cut(s) 437, 464, 506, 710, 721, 894
Csp6I GTAC 2 cut(s) 285, 458
CspCI CAANNNNNGTGG 4 cut(s) 204, 237, 239, 272
CviAII CATG 4 cut(s) 397, 775, 831, 860
CviQI GTAC 2 cut(s) 285, 458
DdeI CTNAG 1 cut(s) 116
DpnI GATC 1 cut(s) 954
DpnII GATC 1 cut(s) 952
EaeI YGGCCR 1 cut(s) 735
EciI GGCGGA 1 cut(s) 681
Eco24I GRGCYC 2 cut(s) 573, 843
Eco47I GGWCC 1 cut(s) 894
EcoRI GAATTC 1 cut(s) 208
EcoRII CCWGG 4 cut(s) 433, 460, 502, 896
EcoT38I GRGCYC 2 cut(s) 573, 843
FaeI CATG 4 cut(s) 400, 778, 834, 863
FalI AAGNNNNNCTT 2 cut(s) 589, 621
FaqI GGGAC 3 cut(s) 401, 533, 599
FatI CATG 4 cut(s) 396, 774, 830, 859
FauI CCCGC 2 cut(s) 585, 782
Fnu4HI GCNGC 2 cut(s) 35, 467
FokI GGATG 1 cut(s) 749
FriOI GRGCYC 2 cut(s) 573, 843
Fsp4HI GCNGC 2 cut(s) 35, 467
FspBI CTAG 3 cut(s) 242, 413, 941
GlaI GCGC 1 cut(s) 149
GluI GCNGC 2 cut(s) 35, 467
GsaI CCCAGC 1 cut(s) 576
GsuI CTGGAG 1 cut(s) 816
HaeIII GGCC 6 cut(s) 438, 466, 507, 711, 722, 737
HapII CCGG 2 cut(s) 470, 560
HhaI GCGC 1 cut(s) 150
Hin1II CATG 4 cut(s) 400, 778, 834, 863
Hin6I GCGC 1 cut(s) 148
HinP1I GCGC 1 cut(s) 148
HinfI GANTC 4 cut(s) 236, 473, 484, 697
HpaII CCGG 2 cut(s) 470, 560
HphI GGTGA 3 cut(s) 204, 339, 357
Hpy188I TCNGA 3 cut(s) 43, 119, 489
Hpy188III TCNNGA 2 cut(s) 523, 795
Hpy99I CGWCG 1 cut(s) 748
HpyAV CCTTC 2 cut(s) 615, 883
HpyCH4III ACNGT 2 cut(s) 547, 949
HpyCH4IV ACGT 1 cut(s) 378
HpyCH4V TGCA 4 cut(s) 47, 125, 266, 400
HpyF10VI GCNNNNNNNGC 3 cut(s) 577, 748, 869
HpyF3I CTNAG 1 cut(s) 116
HpySE526I ACGT 1 cut(s) 378
Hsp92II CATG 4 cut(s) 400, 778, 834, 863
HspAI GCGC 1 cut(s) 148
Kzo9I GATC 1 cut(s) 952
LmnI GCTCC 4 cut(s) 17, 250, 277, 797
Lsp1109I GCAGC 1 cut(s) 46
LweI GCATC 3 cut(s) 34, 253, 799
MaeI CTAG 3 cut(s) 242, 413, 941
MaeII ACGT 1 cut(s) 378
MaeIII GTNAC 2 cut(s) 881, 943
MalI GATC 1 cut(s) 954
MboI GATC 1 cut(s) 952
MboII GAAGA 1 cut(s) 383
MhlI GDGCHC 3 cut(s) 573, 753, 843
MlsI TGGCCA 1 cut(s) 737
MluCI AATT 3 cut(s) 136, 208, 387
MluNI TGGCCA 1 cut(s) 737
MlyI GAGTC 3 cut(s) 482, 493, 706
MmeI TCCRAC 3 cut(s) 116, 353, 512
MnlI CCTC 7 cut(s) 99, 285, 325, 522, 633, 687, 920
Mox20I TGGCCA 1 cut(s) 737
MscI TGGCCA 1 cut(s) 737
Msp20I TGGCCA 1 cut(s) 737
MspI CCGG 2 cut(s) 470, 560
MspR9I CCNGG 4 cut(s) 435, 462, 504, 898
MvaI CCWGG 4 cut(s) 435, 462, 504, 898
MwoI GCNNNNNNNGC 3 cut(s) 577, 748, 869
NdeII GATC 1 cut(s) 952
NlaIII CATG 4 cut(s) 400, 778, 834, 863
NlaIV GGNNCC 2 cut(s) 635, 750
NmeAIII GCCGAG 1 cut(s) 720
NmuCI GTSAC 1 cut(s) 943
NspV TTCGAA 1 cut(s) 657
PfeI GAWTC 1 cut(s) 236
PflMI CCANNNNNTGG 1 cut(s) 13
PkrI GCNGC 2 cut(s) 36, 468
PleI GAGTC 3 cut(s) 481, 492, 705
PpsI GAGTC 3 cut(s) 481, 492, 705
Ppu21I YACGTR 1 cut(s) 379
Psp6I CCWGG 4 cut(s) 433, 460, 502, 896
PspFI CCCAGC 1 cut(s) 572
PspGI CCWGG 4 cut(s) 433, 460, 502, 896
PspN4I GGNNCC 2 cut(s) 635, 750
PspPI GGNCC 6 cut(s) 437, 464, 506, 710, 721, 894
PsrI GAACNNNNNNTAC 2 cut(s) 901, 933
PstNI CAGNNNCTG 1 cut(s) 13
RsaI GTAC 2 cut(s) 286, 459
RsaNI GTAC 2 cut(s) 285, 458
SatI GCNGC 2 cut(s) 35, 467
Sau3AI GATC 1 cut(s) 952
Sau96I GGNCC 6 cut(s) 437, 464, 506, 710, 721, 894
SchI GAGTC 3 cut(s) 482, 493, 706
ScrFI CCNGG 4 cut(s) 435, 462, 504, 898
SduI GDGCHC 3 cut(s) 573, 753, 843
SetI ASST 8 cut(s) 232, 247, 370, 381, 463, 514, 607, 917
SfaNI GCATC 3 cut(s) 34, 253, 799
SfuI TTCGAA 1 cut(s) 657
SinI GGWCC 1 cut(s) 894
SpeI ACTAGT 2 cut(s) 412, 940
Sse9I AATT 3 cut(s) 136, 208, 387
SsiI CCGC 4 cut(s) 467, 578, 692, 789
SspMI CTAG 3 cut(s) 242, 413, 941
StyD4I CCNGG 4 cut(s) 433, 460, 502, 896
TaaI ACNGT 2 cut(s) 547, 949
TaiI ACGT 1 cut(s) 381
TaqI TCGA 1 cut(s) 657
TasI AATT 3 cut(s) 136, 208, 387
TatI WGTACW 1 cut(s) 284
TauI GCSGC 1 cut(s) 469
TfiI GAWTC 1 cut(s) 236
TscAI CASTG 1 cut(s) 657
TseFI GTSAC 1 cut(s) 943
TseI GCWGC 1 cut(s) 34
Tsp45I GTSAC 1 cut(s) 943
TspDTI ATGAA 4 cut(s) 17, 162, 210, 791
TspGWI ACGGA 1 cut(s) 445
TspRI CASTG 1 cut(s) 657
Van91I CCANNNNNTGG 1 cut(s) 13
VpaK11BI GGWCC 1 cut(s) 894
XapI RAATTY 2 cut(s) 136, 208
XcmI CCANNNNNNNNNTGG 1 cut(s) 197
XspI CTAG 3 cut(s) 242, 413, 941
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.