Rmu_sc0001455.1_g000003

Thaumatin-like protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001455.1
OG0006096
Physical Location & Seq
Forward (+)
8391 .. 11700
3310 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1047 bp
atgatggtgttggggagtctagatatgctcttcccaaatctgatcaaggttggccgagttttgtgcagtcgagggtacgacggcggaggtggtttctggaggcttaggagtgctgggcttgtccatttcgacttggacttgtctaattggacttgggttgtacctctttcttctccgctctcactcctctctaccagcttcatttctttaatgggtcctcgtcgtcttctactatctgcctccatagtcacactcctcaccctctcgttcttctcagaaatggagtcggcctcgttcaagatagtgaacaagtgccgccacacgatctggccgggtgttctctccggcgccaacacccaacctctctcgcccaccggcttcgcgctcaagagcggcaagtcccggaccttgtcggtacccaaatcatggtcgggtcggatgtgggcccggaccctctgctccggatcctcccccggaaacttctcctgcctcaccgccgactgcggctccgggaagatcgagtgcgcgggaagcggcgccaagccgccggccactctagcggagttcactctcaacggcgccgacggcttggacttctatgacgtcagcctcgtcgacgggtacaacctcccggtgctggtggtgccgcgtggcgggaggagaggcgggtgcagccccacggggtgcctggtggacttgaacggcgcgtgccccaaggcgctgagggtcgcgcgtgaggggaagagtgggggcgtggtggcgtgtaggagcgcgtgcgaggcgtttggggagccgcagttttgctgcagtgaggcttacgcgacgcccgacacgtgttcgccctcggtgttttcgcagtatttcaaacatgtttgcccacgcgcgtatagctatgcgtatgatgacaagacgagtacgtacacgtgtgcgtcggctgactacattattattttctgccctttgccctatacgagtcaaaaggtgttgggagcacgaaaagatggagcgccattaccactggttaatgagacaatgatgtatttataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Thaumatin

Protein Analysis

348

Amino Acids

37.19

Weight (kDa)

8.71

Isoelectric Point (pI)

38.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 103 - 320 1.1e-81 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1045
AatII GACGTC 1 cut(s) 606
Acc65I GGTACC 1 cut(s) 415
AccB1I GGYRCC 6 cut(s) 347, 415, 536, 578, 643, 684
AccB7I CCANNNNNTGG 1 cut(s) 426
AccBSI CCGCTC 2 cut(s) 178, 393
AccI GTMKAC 1 cut(s) 615
AccIII TCCGGA 1 cut(s) 461
AclWI GGATC 2 cut(s) 459, 472
AcoI YGGCCR 3 cut(s) 52, 329, 549
AcvI CACGTG 2 cut(s) 834, 924
AcyI GRCGYC 5 cut(s) 348, 537, 579, 603, 824
AdeI CACNNNGTG 1 cut(s) 684
AfaI GTAC 6 cut(s) 77, 162, 417, 623, 916, 920
AfiI CCNNNNNNNGG 3 cut(s) 426, 637, 653
AflIII ACRYGT 5 cut(s) 831, 833, 868, 921, 923
AgsI TTSAA 3 cut(s) 298, 700, 865
AjnI CCWGG 1 cut(s) 687
AluBI AGCT 2 cut(s) 198, 891
AluI AGCT 2 cut(s) 198, 891
Alw21I GWGCWC 1 cut(s) 994
Alw26I GTCTC 1 cut(s) 1022
AlwI GGATC 2 cut(s) 459, 472
Aor13HI TCCGGA 1 cut(s) 461
AoxI GGCC 5 cut(s) 52, 288, 329, 444, 549
ApaI GGGCCC 1 cut(s) 448
ApeKI GCWGC 2 cut(s) 672, 804
Asp718I GGTACC 1 cut(s) 415
AspS9I GGNCC 5 cut(s) 215, 405, 444, 445, 450
AsuC2I CCSGG 6 cut(s) 333, 403, 448, 474, 511, 632
AsuHPI GGTGA 2 cut(s) 250, 484
AvaII GGWCC 3 cut(s) 215, 405, 450
BaeGI GKGCMC 2 cut(s) 448, 713
BamHI GGATCC 1 cut(s) 464
BanI GGYRCC 6 cut(s) 347, 415, 536, 578, 643, 684
BanII GRGCYC 1 cut(s) 448
BbrPI CACGTG 2 cut(s) 834, 924
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 994
BbvCI CCTCAGC 1 cut(s) 722
BbvI GCAGC 2 cut(s) 684, 791
BccI CCATC 1 cut(s) 995
BceAI ACGGC 4 cut(s) 97, 592, 601, 718
BcgI CGANNNNNNTGC 2 cut(s) 45, 79
BciT130I CCWGG 1 cut(s) 689
BclI TGATCA 1 cut(s) 42
BcnI CCSGG 6 cut(s) 333, 403, 448, 474, 511, 632
BcoDI GTCTC 1 cut(s) 1022
BfaI CTAG 2 cut(s) 20, 557
BfmI CTRYAG 1 cut(s) 805
BfoI RGCGCY 5 cut(s) 351, 540, 582, 722, 1010
BisI GCNGC 9 cut(s) 316, 394, 505, 535, 545, 647, 673, 794, 805
BlsI GCNGC 9 cut(s) 317, 395, 506, 536, 546, 648, 674, 795, 806
Bme1390I CCNGG 7 cut(s) 333, 403, 448, 474, 511, 632, 689
Bme18I GGWCC 3 cut(s) 215, 405, 450
BmgT120I GGNCC 5 cut(s) 215, 405, 444, 445, 450
BmrFI CCNGG 7 cut(s) 333, 403, 448, 474, 511, 632, 689
BpiI GAAGAC 1 cut(s) 218
BplI GAGNNNNNCTC 2 cut(s) 275, 307
BpmI CTGGAG 1 cut(s) 118
Bpu10I CCTNAGC 2 cut(s) 104, 722
BpuEI CTTGAG 1 cut(s) 371
BpuMI CCSGG 6 cut(s) 333, 403, 448, 474, 511, 632
BsaAI YACGTR 3 cut(s) 834, 918, 924
BsaHI GRCGYC 5 cut(s) 348, 537, 579, 603, 824
BsaJI CCNNGG 4 cut(s) 472, 678, 714, 843
BsaWI WCCGGW 1 cut(s) 461
BsaXI ACNNNNNCTCC 4 cut(s) 491, 521, 782, 812
Bsc4I CCNNNNNNNGG 3 cut(s) 426, 637, 653
Bse118I RCCGGY 2 cut(s) 374, 547
Bse1I ACTGG 1 cut(s) 1023
BseAI TCCGGA 1 cut(s) 461
BseBI CCWGG 1 cut(s) 689
BseDI CCNNGG 4 cut(s) 472, 678, 714, 843
BseGI GGATG 1 cut(s) 444
BseLI CCNNNNNNNGG 3 cut(s) 426, 637, 653
BseMII CTCAG 2 cut(s) 288, 713
BseNI ACTGG 1 cut(s) 1023
BseRI GAGGAG 3 cut(s) 176, 245, 673
BseSI GKGCMC 2 cut(s) 448, 713
BseXI GCAGC 2 cut(s) 684, 791
BseYI CCCAGC 1 cut(s) 113
BsgI GTGCAG 2 cut(s) 85, 691
BshFI GGCC 5 cut(s) 54, 290, 331, 446, 551
BshNI GGYRCC 6 cut(s) 347, 415, 536, 578, 643, 684
BsiHKAI GWGCWC 1 cut(s) 994
BslFI GGGAC 1 cut(s) 385
BslI CCNNNNNNNGG 3 cut(s) 426, 637, 653
BsmAI GTCTC 1 cut(s) 1022
BsmFI GGGAC 1 cut(s) 385
BsnI GGCC 5 cut(s) 54, 290, 331, 446, 551
Bsp120I GGGCCC 1 cut(s) 444
Bsp1286I GDGCHC 3 cut(s) 448, 713, 994
Bsp13I TCCGGA 1 cut(s) 461
Bsp143I GATC 4 cut(s) 42, 324, 464, 516
BspANI GGCC 5 cut(s) 54, 290, 331, 446, 551
BspCNI CTCAG 2 cut(s) 287, 714
BspEI TCCGGA 1 cut(s) 461
BspMAI CTGCAG 1 cut(s) 809
BspPI GGATC 2 cut(s) 459, 472
BspQI GCTCTTC 1 cut(s) 35
BspT107I GGYRCC 6 cut(s) 347, 415, 536, 578, 643, 684
BsrBI CCGCTC 2 cut(s) 178, 393
BsrFI RCCGGY 2 cut(s) 374, 547
BsrI ACTGG 1 cut(s) 1023
BssAI RCCGGY 2 cut(s) 374, 547
BssECI CCNNGG 4 cut(s) 472, 678, 714, 843
BssMI GATC 4 cut(s) 42, 324, 464, 516
BssNI GRCGYC 5 cut(s) 348, 537, 579, 603, 824
BssT1I CCWWGG 1 cut(s) 714
Bst2UI CCWGG 1 cut(s) 689
Bst6I CTCTTC 2 cut(s) 35, 737
BstACI GRCGYC 5 cut(s) 348, 537, 579, 603, 824
BstBAI YACGTR 3 cut(s) 834, 918, 924
BstC8I GCNNGC 3 cut(s) 549, 709, 775
BstDEI CTNAG 3 cut(s) 104, 274, 722
BstDSI CCRYGG 1 cut(s) 678
BstF5I GGATG 1 cut(s) 444
BstH2I RGCGCY 5 cut(s) 351, 540, 582, 722, 1010
BstKTI GATC 4 cut(s) 45, 327, 467, 519
BstMAI GTCTC 1 cut(s) 1022
BstMBI GATC 4 cut(s) 42, 324, 464, 516
BstMWI GCNNNNNNNGC 7 cut(s) 531, 557, 585, 643, 672, 779, 888
BstNI CCWGG 1 cut(s) 689
BstNSI RCATGY 1 cut(s) 872
BstSCI CCNGG 7 cut(s) 331, 401, 446, 472, 509, 630, 687
BstSFI CTRYAG 1 cut(s) 805
BstSLI GKGCMC 2 cut(s) 448, 713
BstSNI TACGTA 1 cut(s) 918
BstV1I GCAGC 2 cut(s) 684, 791
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 464
BstYI RGATCY 1 cut(s) 464
BsuRI GGCC 5 cut(s) 54, 290, 331, 446, 551
BtgI CCRYGG 1 cut(s) 678
BtsCI GGATG 1 cut(s) 444
BtsI GCAGTG 1 cut(s) 814
BtsIMutI CAGTG 2 cut(s) 814, 1016
Cac8I GCNNGC 3 cut(s) 549, 709, 775
Cfr10I RCCGGY 2 cut(s) 374, 547
Cfr13I GGNCC 5 cut(s) 215, 405, 444, 445, 450
CseI GACGC 2 cut(s) 832, 918
Csp6I GTAC 6 cut(s) 76, 161, 416, 622, 915, 919
CviAII CATG 2 cut(s) 426, 869
CviQI GTAC 6 cut(s) 76, 161, 416, 622, 915, 919
DdeI CTNAG 3 cut(s) 104, 274, 722
DinI GGCGCC 3 cut(s) 349, 538, 580
DpnI GATC 4 cut(s) 44, 326, 466, 518
DpnII GATC 4 cut(s) 42, 324, 464, 516
DraIII CACNNNGTG 1 cut(s) 684
EaeI YGGCCR 3 cut(s) 52, 329, 549
Eam1104I CTCTTC 2 cut(s) 35, 737
EarI CTCTTC 2 cut(s) 35, 737
EciI GGCGGA 1 cut(s) 99
Eco105I TACGTA 1 cut(s) 918
Eco130I CCWWGG 1 cut(s) 714
Eco24I GRGCYC 1 cut(s) 448
Eco47I GGWCC 3 cut(s) 215, 405, 450
Eco72I CACGTG 2 cut(s) 834, 924
EcoO109I RGGNCCY 1 cut(s) 215
EcoRII CCWGG 1 cut(s) 687
EcoT14I CCWWGG 1 cut(s) 714
EcoT38I GRGCYC 1 cut(s) 448
EgeI GGCGCC 3 cut(s) 349, 538, 580
EheI GGCGCC 3 cut(s) 349, 538, 580
ErhI CCWWGG 1 cut(s) 714
FaeI CATG 2 cut(s) 429, 872
FaqI GGGAC 1 cut(s) 385
FatI CATG 2 cut(s) 425, 868
FauI CCCGC 3 cut(s) 520, 647, 659
FbaI TGATCA 1 cut(s) 42
FblI GTMKAC 1 cut(s) 615
Fnu4HI GCNGC 9 cut(s) 316, 394, 505, 535, 545, 647, 673, 794, 805
FokI GGATG 1 cut(s) 451
FriOI GRGCYC 1 cut(s) 448
Fsp4HI GCNGC 9 cut(s) 316, 394, 505, 535, 545, 647, 673, 794, 805
FspBI CTAG 2 cut(s) 20, 557
GluI GCNGC 9 cut(s) 316, 394, 505, 535, 545, 647, 673, 794, 805
GsaI CCCAGC 1 cut(s) 117
GsuI CTGGAG 1 cut(s) 118
HaeII RGCGCY 5 cut(s) 351, 540, 582, 722, 1010
HaeIII GGCC 5 cut(s) 54, 290, 331, 446, 551
HgaI GACGC 2 cut(s) 832, 918
Hin1I GRCGYC 5 cut(s) 348, 537, 579, 603, 824
Hin1II CATG 2 cut(s) 429, 872
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HinfI GANTC 3 cut(s) 16, 284, 973
HphI GGTGA 2 cut(s) 250, 484
Hpy166II GTNNAC 5 cut(s) 307, 567, 616, 694, 921
Hpy188I TCNGA 3 cut(s) 42, 277, 438
Hpy188III TCNNGA 5 cut(s) 20, 97, 298, 388, 462
Hpy8I GTNNAC 5 cut(s) 307, 567, 616, 694, 921
Hpy99I CGWCG 7 cut(s) 83, 225, 587, 617, 620, 826, 934
HpyCH4IV ACGT 4 cut(s) 603, 833, 917, 923
HpyCH4V TGCA 3 cut(s) 66, 672, 807
HpyF10VI GCNNNNNNNGC 7 cut(s) 531, 557, 585, 643, 672, 779, 888
HpyF3I CTNAG 3 cut(s) 104, 274, 722
HpySE526I ACGT 4 cut(s) 603, 833, 917, 923
Hsp92I GRCGYC 5 cut(s) 348, 537, 579, 603, 824
Hsp92II CATG 2 cut(s) 429, 872
KasI GGCGCC 3 cut(s) 347, 536, 578
Kpn2I TCCGGA 1 cut(s) 461
KpnI GGTACC 1 cut(s) 419
KroI GCCGGC 1 cut(s) 547
KroNI GCCGGC 1 cut(s) 549
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 4 cut(s) 42, 324, 464, 516
LguI GCTCTTC 1 cut(s) 35
LmnI GCTCC 6 cut(s) 464, 512, 768, 790, 989, 1004
Lsp1109I GCAGC 2 cut(s) 684, 791
MaeI CTAG 2 cut(s) 20, 557
MaeII ACGT 4 cut(s) 603, 833, 917, 923
MaeIII GTNAC 1 cut(s) 247
MalI GATC 4 cut(s) 44, 326, 466, 518
MbiI CCGCTC 2 cut(s) 178, 393
MboI GATC 4 cut(s) 42, 324, 464, 516
MboII GAAGA 6 cut(s) 22, 162, 218, 262, 526, 754
MflI RGATCY 1 cut(s) 464
MhlI GDGCHC 3 cut(s) 448, 713, 994
MluCI AATT 1 cut(s) 145
Mly113I GGCGCC 3 cut(s) 348, 537, 579
MlyI GAGTC 3 cut(s) 25, 293, 982
MmeI TCCRAC 1 cut(s) 416
MroI TCCGGA 1 cut(s) 461
MroNI GCCGGC 1 cut(s) 547
MseI TTAA 2 cut(s) 209, 1023
MspR9I CCNGG 7 cut(s) 333, 403, 448, 474, 511, 632, 689
MvaI CCWGG 1 cut(s) 689
MwoI GCNNNNNNNGC 7 cut(s) 531, 557, 585, 643, 672, 779, 888
NaeI GCCGGC 1 cut(s) 549
NarI GGCGCC 3 cut(s) 348, 537, 579
NciI CCSGG 6 cut(s) 333, 403, 448, 474, 511, 632
NdeII GATC 4 cut(s) 42, 324, 464, 516
NgoMIV GCCGGC 1 cut(s) 547
NlaIII CATG 2 cut(s) 429, 872
NmeAIII GCCGAG 1 cut(s) 80
NmuCI GTSAC 1 cut(s) 247
NspI RCATGY 1 cut(s) 872
PciI ACATGT 1 cut(s) 868
PciSI GCTCTTC 1 cut(s) 35
PcsI WCGNNNNNNNCGW 3 cut(s) 609, 825, 830
PdiI GCCGGC 1 cut(s) 549
PflFI GACNNNGTC 1 cut(s) 409
PflMI CCANNNNNTGG 1 cut(s) 426
PfoI TCCNGGA 2 cut(s) 401, 509
PkrI GCNGC 9 cut(s) 317, 395, 506, 536, 546, 648, 674, 795, 806
PleI GAGTC 3 cut(s) 24, 292, 981
PluTI GGCGCC 3 cut(s) 351, 540, 582
PmaCI CACGTG 2 cut(s) 834, 924
PmlI CACGTG 2 cut(s) 834, 924
PpsI GAGTC 3 cut(s) 24, 292, 981
Ppu21I YACGTR 3 cut(s) 834, 918, 924
PpuMI RGGWCCY 1 cut(s) 215
PscI ACATGT 1 cut(s) 868
PsiI TTATAA 1 cut(s) 1045
Psp5II RGGWCCY 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 687
PspCI CACGTG 2 cut(s) 834, 924
PspFI CCCAGC 1 cut(s) 113
PspGI CCWGG 1 cut(s) 687
PspOMI GGGCCC 1 cut(s) 444
PspPI GGNCC 5 cut(s) 215, 405, 444, 445, 450
PspPPI RGGWCCY 1 cut(s) 215
PstI CTGCAG 1 cut(s) 809
PsuI RGATCY 1 cut(s) 464
PsyI GACNNNGTC 1 cut(s) 409
RsaI GTAC 6 cut(s) 77, 162, 417, 623, 916, 920
RsaNI GTAC 6 cut(s) 76, 161, 416, 622, 915, 919
SalI GTCGAC 1 cut(s) 614
SapI GCTCTTC 1 cut(s) 35
SaqAI TTAA 2 cut(s) 209, 1023
SatI GCNGC 9 cut(s) 316, 394, 505, 535, 545, 647, 673, 794, 805
Sau3AI GATC 4 cut(s) 42, 324, 464, 516
Sau96I GGNCC 5 cut(s) 215, 405, 444, 445, 450
SchI GAGTC 3 cut(s) 25, 293, 982
ScrFI CCNGG 7 cut(s) 333, 403, 448, 474, 511, 632, 689
SduI GDGCHC 3 cut(s) 448, 713, 994
SfcI CTRYAG 1 cut(s) 805
SfoI GGCGCC 3 cut(s) 349, 538, 580
SgrDI CGTCGACG 1 cut(s) 614
SinI GGWCC 3 cut(s) 215, 405, 450
SmlI CTYRAG 1 cut(s) 386
SmoI CTYRAG 1 cut(s) 386
SnaBI TACGTA 1 cut(s) 918
Sse9I AATT 1 cut(s) 145
SspDI GGCGCC 3 cut(s) 347, 536, 578
SspMI CTAG 2 cut(s) 20, 557
StyD4I CCNGG 7 cut(s) 331, 401, 446, 472, 509, 630, 687
StyI CCWWGG 1 cut(s) 714
TaiI ACGT 4 cut(s) 606, 836, 920, 926
TaqI TCGA 4 cut(s) 70, 129, 519, 615
TasI AATT 1 cut(s) 145
TauI GCSGC 7 cut(s) 318, 396, 507, 537, 547, 649, 796
Tru1I TTAA 2 cut(s) 209, 1023
Tru9I TTAA 2 cut(s) 209, 1023
TscAI CASTG 2 cut(s) 814, 1023
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 2 cut(s) 672, 804
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 190
TspRI CASTG 2 cut(s) 814, 1023
Tth111I GACNNNGTC 1 cut(s) 409
Van91I CCANNNNNTGG 1 cut(s) 426
VpaK11BI GGWCC 3 cut(s) 215, 405, 450
XbaI TCTAGA 1 cut(s) 19
XceI RCATGY 1 cut(s) 872
XcmI CCANNNNNNNNNTGG 1 cut(s) 685
XmiI GTMKAC 1 cut(s) 615
XspI CTAG 2 cut(s) 20, 557
ZraI GACGTC 1 cut(s) 604
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.