Rmu_sc0001464.1_g000012
BZIP Family

basic region leucin zipper

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001464.1
OG0012846
Physical Location & Seq
Forward (+)
50682 .. 51269
588 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 588 bp
atgctttctggtgagatttcaggaatccactacctgactacacctgaaatccaggttccaaatcctgcaaactttggcaatattatcatgcaggacaacataccgtccttccatttcaatggagcatcagtcttcagcaatttactccacactcaaatccctcctcctggacatgatcaattgttagctactccggtgcagtcctcgagtctcagcaacaactccagtacctccgatgaagcagaagaacacgtgcagcagctgagcaacatcattgatcaaagaaagcagaggagaatgatatcaaacagagaatcggctcgcagatcacggatgcggaaacagaagcacttggatgagctctggtcacaggtgcttcggcttagaaccgaaaaccacaacctgatggacaggttgaaccatgtgtccgagacccatgacagggttcttgaggagaatgcaaagctcaaggaagaagcctcggatcttcgacaaatgctctccgagatccagatcagcaccttgagatcgacagagctggaagtagaggcctgcagcacaactttaagcactgacttgctccgttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
bZIP_1

Protein Analysis

195

Amino Acids

22.25

Weight (kDa)

5.84

Isoelectric Point (pI)

63.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
bZIP_1 PF00170 95 - 153 5.5e-12 bZIP transcription factor
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012846)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G13600 AT2G04038
fragaria_vesca FvH4_4g28780
malus_domestica MD13G1053800.v1.1 MD16G1052300.v1.1
prunus_persica Prupe.1G298200_v2.0.a1
pyrus_communis pycom13g04800 pycom16g04590
rosa_chinensis RchiOBHm_Chr4g0436911
rosa_laevigata RLG00000006488
rosa_multiflora Rmu_sc0001464.1_g000012
rosa_roxburghii Rroxscaffold_5G00377960
rosa_rugosa Rorug04G0297100
rosa_samantha Rh4AG351600 Rh4BG360400 Rh4CG374700 Rh4DG354800
rosa_wichuraiana Rw4G030770

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 337
AclWI GGATC 2 cut(s) 492, 502
AcuI CTGAAG 1 cut(s) 118
AcvI CACGTG 1 cut(s) 253
AfaI GTAC 1 cut(s) 229
AfiI CCNNNNNNNGG 3 cut(s) 167, 441, 442
AflIII ACRYGT 1 cut(s) 250
AgsI TTSAA 2 cut(s) 118, 418
AjnI CCWGG 2 cut(s) 51, 166
AloI GAACNNNNNNTCC 2 cut(s) 410, 442
AluBI AGCT 5 cut(s) 188, 262, 361, 466, 538
AluI AGCT 5 cut(s) 188, 262, 361, 466, 538
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 2 cut(s) 215, 425
AlwI GGATC 2 cut(s) 492, 502
AlwNI CAGNNNCTG 1 cut(s) 262
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 1 cut(s) 549
ApeKI GCWGC 3 cut(s) 256, 259, 555
AsuHPI GGTGA 1 cut(s) 23
AvaI CYCGRG 1 cut(s) 205
BaeI ACNNNNGTAYC 2 cut(s) 211, 244
BanII GRGCYC 1 cut(s) 363
BbrPI CACGTG 1 cut(s) 253
BbsI GAAGAC 1 cut(s) 124
Bbv12I GWGCWC 1 cut(s) 363
BbvI GCAGC 3 cut(s) 268, 271, 567
BccI CCATC 1 cut(s) 400
BciT130I CCWGG 2 cut(s) 53, 168
BclI TGATCA 2 cut(s) 175, 277
BcoDI GTCTC 2 cut(s) 215, 425
BfmI CTRYAG 1 cut(s) 553
BisI GCNGC 3 cut(s) 257, 260, 556
BlpI GCTNAGC 1 cut(s) 263
BlsI GCNGC 3 cut(s) 258, 261, 557
Bme1390I CCNGG 2 cut(s) 53, 168
BmeT110I CYCGRG 1 cut(s) 205
BmiI GGNNCC 1 cut(s) 57
BmrFI CCNGG 2 cut(s) 53, 168
BmsI GCATC 2 cut(s) 134, 324
BpiI GAAGAC 1 cut(s) 124
BpmI CTGGAG 1 cut(s) 208
Bpu1102I GCTNAGC 1 cut(s) 263
BpuEI CTTGAG 3 cut(s) 452, 470, 544
BsaAI YACGTR 1 cut(s) 253
BsaBI GATNNNNATC 1 cut(s) 512
BsaI GGTCTC 1 cut(s) 425
BsaJI CCNNGG 1 cut(s) 480
BsaWI WCCGGW 1 cut(s) 193
BsaXI ACNNNNNCTCC 2 cut(s) 114, 144
Bsc4I CCNNNNNNNGG 3 cut(s) 167, 441, 442
Bse1I ACTGG 1 cut(s) 225
Bse8I GATNNNNATC 1 cut(s) 512
BseBI CCWGG 2 cut(s) 53, 168
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 2 cut(s) 339, 361
BseJI GATNNNNATC 1 cut(s) 512
BseLI CCNNNNNNNGG 3 cut(s) 167, 441, 442
BseMII CTCAG 2 cut(s) 226, 254
BseNI ACTGG 1 cut(s) 225
BseRI GAGGAG 3 cut(s) 153, 307, 467
BseXI GCAGC 3 cut(s) 268, 271, 567
BsgI GTGCAG 2 cut(s) 218, 275
BshFI GGCC 1 cut(s) 551
BsiHKAI GWGCWC 1 cut(s) 363
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 1 cut(s) 194
BslI CCNNNNNNNGG 3 cut(s) 167, 441, 442
BsmAI GTCTC 2 cut(s) 215, 425
BsmI GAATGC 1 cut(s) 463
BsnI GGCC 1 cut(s) 551
Bso31I GGTCTC 1 cut(s) 425
BsoBI CYCGRG 1 cut(s) 205
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 527
Bsp1720I GCTNAGC 1 cut(s) 263
BspACI CCGC 1 cut(s) 337
BspANI GGCC 1 cut(s) 551
BspCNI CTCAG 2 cut(s) 225, 255
BspLI GGNNCC 1 cut(s) 57
BspMAI CTGCAG 1 cut(s) 557
BspPI GGATC 2 cut(s) 492, 502
BspTNI GGTCTC 1 cut(s) 425
BsrI ACTGG 1 cut(s) 225
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 527
Bst2UI CCWGG 2 cut(s) 53, 168
Bst4CI ACNGT 1 cut(s) 105
BstBAI YACGTR 1 cut(s) 253
BstC8I GCNNGC 2 cut(s) 322, 553
BstDEI CTNAG 3 cut(s) 212, 263, 383
BstF5I GGATG 2 cut(s) 339, 361
BstKTI GATC 7 cut(s) 178, 280, 329, 487, 510, 516, 530
BstMAI GTCTC 2 cut(s) 215, 425
BstMBI GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 527
BstNI CCWGG 2 cut(s) 53, 168
BstSCI CCNGG 2 cut(s) 51, 166
BstSFI CTRYAG 1 cut(s) 553
BstV1I GCAGC 3 cut(s) 268, 271, 567
BstV2I GAAGAC 1 cut(s) 124
BstX2I RGATCY 2 cut(s) 484, 507
BstXI CCANNNNNNTGG 1 cut(s) 119
BstYI RGATCY 2 cut(s) 484, 507
BsuRI GGCC 1 cut(s) 551
BtsCI GGATG 2 cut(s) 339, 361
BtsIMutI CAGTG 1 cut(s) 570
Cac8I GCNNGC 2 cut(s) 322, 553
CaiI CAGNNNCTG 1 cut(s) 262
Csp6I GTAC 1 cut(s) 228
CviAII CATG 4 cut(s) 88, 173, 422, 437
CviJI RGCY 9 cut(s) 188, 262, 320, 361, 382, 466, 479, 538, 551
CviKI_1 RGCY 9 cut(s) 188, 262, 320, 361, 382, 466, 479, 538, 551
CviQI GTAC 1 cut(s) 228
DdeI CTNAG 3 cut(s) 212, 263, 383
DpnI GATC 7 cut(s) 177, 279, 328, 486, 509, 515, 529
DpnII GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 527
Ecl136II GAGCTC 1 cut(s) 361
Eco147I AGGCCT 1 cut(s) 551
Eco24I GRGCYC 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 425
Eco32I GATATC 1 cut(s) 303
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 118
Eco72I CACGTG 1 cut(s) 253
Eco88I CYCGRG 1 cut(s) 205
EcoICRI GAGCTC 1 cut(s) 361
EcoRII CCWGG 2 cut(s) 51, 166
EcoRV GATATC 1 cut(s) 303
EcoT38I GRGCYC 1 cut(s) 363
FaeI CATG 4 cut(s) 91, 176, 425, 440
FaiI YATR 5 cut(s) 89, 101, 174, 423, 438
FatI CATG 4 cut(s) 87, 172, 421, 436
FbaI TGATCA 2 cut(s) 175, 277
Fnu4HI GCNGC 3 cut(s) 257, 260, 556
FokI GGATG 2 cut(s) 346, 368
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 3 cut(s) 257, 260, 556
GluI GCNGC 3 cut(s) 257, 260, 556
GsuI CTGGAG 1 cut(s) 208
HaeIII GGCC 1 cut(s) 551
HapII CCGG 1 cut(s) 194
Hin1II CATG 4 cut(s) 91, 176, 425, 440
HinfI GANTC 3 cut(s) 24, 208, 314
HpaII CCGG 1 cut(s) 194
HphI GGTGA 1 cut(s) 23
Hpy188I TCNGA 4 cut(s) 235, 430, 484, 505
Hpy188III TCNNGA 3 cut(s) 21, 449, 511
HpyAV CCTTC 1 cut(s) 118
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4IV ACGT 1 cut(s) 252
HpyCH4V TGCA 6 cut(s) 68, 91, 199, 256, 461, 555
HpyF3I CTNAG 3 cut(s) 212, 263, 383
HpySE526I ACGT 1 cut(s) 252
Hsp92II CATG 4 cut(s) 91, 176, 425, 440
Ksp22I TGATCA 2 cut(s) 175, 277
Kzo9I GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 527
LmnI GCTCC 2 cut(s) 122, 585
Lsp1109I GCAGC 3 cut(s) 268, 271, 567
LweI GCATC 2 cut(s) 134, 324
MaeII ACGT 1 cut(s) 252
MaeIII GTNAC 1 cut(s) 366
MalI GATC 7 cut(s) 177, 279, 328, 486, 509, 515, 529
MboI GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 527
MboII GAAGA 4 cut(s) 124, 257, 479, 485
MfeI CAATTG 1 cut(s) 179
MflI RGATCY 2 cut(s) 484, 507
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 2 cut(s) 139, 179
MlyI GAGTC 1 cut(s) 217
MnlI CCTC 8 cut(s) 171, 174, 214, 241, 285, 445, 490, 541
MseI TTAA 1 cut(s) 566
MslI CAYNNNNRTG 2 cut(s) 117, 354
MspA1I CMGCKG 1 cut(s) 262
MspI CCGG 1 cut(s) 194
MspR9I CCNGG 2 cut(s) 53, 168
MunI CAATTG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 463
MvaI CCWGG 2 cut(s) 53, 168
NdeII GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 527
NlaIII CATG 4 cut(s) 91, 176, 425, 440
NlaIV GGNNCC 1 cut(s) 57
NmuCI GTSAC 1 cut(s) 366
PaeR7I CTCGAG 1 cut(s) 205
PceI AGGCCT 1 cut(s) 551
PctI GAATGC 1 cut(s) 463
PfeI GAWTC 2 cut(s) 24, 314
PfoI TCCNGGA 1 cut(s) 166
PkrI GCNGC 3 cut(s) 258, 261, 557
PleI GAGTC 1 cut(s) 216
PmaCI CACGTG 1 cut(s) 253
PmlI CACGTG 1 cut(s) 253
PpsI GAGTC 1 cut(s) 216
Ppu21I YACGTR 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 363
Psp6I CCWGG 2 cut(s) 51, 166
PspCI CACGTG 1 cut(s) 253
PspGI CCWGG 2 cut(s) 51, 166
PspN4I GGNNCC 1 cut(s) 57
PspXI VCTCGAGB 1 cut(s) 205
PstI CTGCAG 1 cut(s) 557
PstNI CAGNNNCTG 1 cut(s) 262
PsuI RGATCY 2 cut(s) 484, 507
PvuII CAGCTG 1 cut(s) 262
RsaI GTAC 1 cut(s) 229
RsaNI GTAC 1 cut(s) 228
RseI CAYNNNNRTG 2 cut(s) 117, 354
SacI GAGCTC 1 cut(s) 363
SaqAI TTAA 1 cut(s) 566
SatI GCNGC 3 cut(s) 257, 260, 556
Sau3AI GATC 7 cut(s) 175, 277, 326, 484, 507, 513, 527
SchI GAGTC 1 cut(s) 217
ScrFI CCNGG 2 cut(s) 53, 168
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 2 cut(s) 134, 324
SfcI CTRYAG 1 cut(s) 553
Sfr274I CTCGAG 1 cut(s) 205
SlaI CTCGAG 1 cut(s) 205
SmiMI CAYNNNNRTG 2 cut(s) 117, 354
SmlI CTYRAG 4 cut(s) 205, 449, 467, 523
SmoI CTYRAG 4 cut(s) 205, 449, 467, 523
Sse9I AATT 2 cut(s) 139, 179
SseBI AGGCCT 1 cut(s) 551
SsiI CCGC 1 cut(s) 337
SspI AATATT 1 cut(s) 82
SstI GAGCTC 1 cut(s) 363
StuI AGGCCT 1 cut(s) 551
StyD4I CCNGG 2 cut(s) 51, 166
TaaI ACNGT 1 cut(s) 105
TaiI ACGT 1 cut(s) 255
TaqI TCGA 3 cut(s) 206, 490, 530
TasI AATT 2 cut(s) 139, 179
TfiI GAWTC 2 cut(s) 24, 314
Tru1I TTAA 1 cut(s) 566
Tru9I TTAA 1 cut(s) 566
TscAI CASTG 1 cut(s) 577
TseFI GTSAC 1 cut(s) 366
TseI GCWGC 3 cut(s) 256, 259, 555
Tsp45I GTSAC 1 cut(s) 366
TspDTI ATGAA 1 cut(s) 252
TspGWI ACGGA 2 cut(s) 346, 572
TspRI CASTG 1 cut(s) 577
XhoI CTCGAG 1 cut(s) 205
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.