Rmu_sc0001605.1_g000022

Protein NRT1 PTR FAMILY

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001605.1
OG0012381
Physical Location & Seq
Reverse (-)
64660 .. 65722
1063 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 966 bp
atgggtaataagccagttgtgagcatgcttcaagtttttaaggcagctgcattgaaattactgaattccaaagtcaagttacccgatgaaaatgatgttactgagctagagcttcaagggaaaccgctctgtcgacatcagaacttaagcagcaatgaaggcttgaacaatgagcatcccaaaagcagcatccacatgttcgaaaatgcaaaagttattcttaggcttttgcccatatggctaatgcttttaatgtttgcagtgattttccagcaaccttcgacattcttcaccaaacaaggcatgacaatgaagaggaatatcggaagcaattttctgattccacccgcaacactgcagagtgctattgcactttctatagttgtgttgatgcctctttatgacaaagttctgatcccaattactaaggtcctgacttgtaacgaaaagggcatcaccgtaatgcaaaggatggggattgggatattcacttcggtcatagcactgatcattgcagcacttgtagagacaagaaggctccatatcagcagaaatatggaaatcctaggatctcaatctgagacggttccattaagcatattctggttgctgccacagtacattcttctgggcatttcggacattttcactgtcgttgggatgcaagagttcttttactctgaatttcccattagaatgagaacaatggcctttgcactatacaccagtgtttttggggtcgggagctacttgagtgcccttttgatctcaacagttgaaggcatcacaagttcaaatggaagtaagagctggttctgtgatgatatgaatgaagcaaggctagacaagtactactggtttttagcagcagcaagtgcactgagctttctgttttttgtgattatttcatcattttacacaagtaagagggatttggagttggacggtaatgaaagttgtaaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0008150 GO:0009605 GO:0009607 GO:0009624 GO:0043207 GO:0050896 GO:0051704 GO:0051707
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PTR2

Protein Analysis

321

Amino Acids

36.04

Weight (kDa)

8.58

Isoelectric Point (pI)

39.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTR2 PF00854 23 - 271 6.4e-40 POT family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012381)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G01350 AT5G14940
fragaria_vesca FvH4_6g49960
malus_domestica MD09G1040700.v1.1 MD17G1041000.v1.1
prunus_persica Prupe.3G277200_v2.0.a1 Prupe.3G277200_v2.0.a1
pyrus_communis pycom111g03160 pycom17g03740
rosa_chinensis RchiOBHm_Chr2g0170141
rosa_laevigata RLG00000021928
rosa_multiflora Rmu_sc0001605.1_g000022
rosa_roxburghii Rroxscaffold_2G00081560
rosa_rugosa Rorug02G0546100.1
rosa_samantha Rh2BG629700 Rh2CG599200 Rh2DG641600
rosa_wichuraiana Rw0G018340 Rw2G051190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 127
AccI GTMKAC 1 cut(s) 133
AciI CCGC 2 cut(s) 125, 348
AclWI GGATC 2 cut(s) 409, 577
AcsI RAATTY 2 cut(s) 64, 683
AfaI GTAC 2 cut(s) 620, 851
AflII CTTAAG 1 cut(s) 145
AflIII ACRYGT 1 cut(s) 195
AgsI TTSAA 6 cut(s) 32, 55, 116, 166, 779, 795
AluBI AGCT 6 cut(s) 47, 106, 112, 747, 810, 885
AluI AGCT 6 cut(s) 47, 106, 112, 747, 810, 885
Alw21I GWGCWC 1 cut(s) 880
Alw26I GTCTC 2 cut(s) 521, 575
Alw44I GTGCAC 1 cut(s) 876
AlwI GGATC 2 cut(s) 409, 577
AoxI GGCC 1 cut(s) 708
ApaLI GTGCAC 1 cut(s) 876
ApeKI GCWGC 8 cut(s) 44, 47, 150, 186, 515, 610, 866, 869
ApoI RAATTY 2 cut(s) 64, 683
AspA2I CCTAGG 1 cut(s) 565
AspS9I GGNCC 1 cut(s) 430
AsuHPI GGTGA 2 cut(s) 283, 448
AsuII TTCGAA 1 cut(s) 201
AvaII GGWCC 1 cut(s) 430
AvrII CCTAGG 1 cut(s) 565
BaeGI GKGCMC 2 cut(s) 760, 880
Bbv12I GWGCWC 1 cut(s) 880
BbvI GCAGC 8 cut(s) 34, 56, 162, 198, 527, 597, 878, 881
BccI CCATC 1 cut(s) 466
BclI TGATCA 1 cut(s) 507
BcoDI GTCTC 2 cut(s) 521, 575
BfaI CTAG 3 cut(s) 107, 566, 842
BfmI CTRYAG 2 cut(s) 356, 378
BfrI CTTAAG 1 cut(s) 145
BglI GCCNNNNNGGC 1 cut(s) 238
BisI GCNGC 8 cut(s) 45, 48, 151, 187, 516, 611, 867, 870
BlnI CCTAGG 1 cut(s) 565
BlsI GCNGC 8 cut(s) 46, 49, 152, 188, 517, 612, 868, 871
BmcAI AGTACT 1 cut(s) 851
Bme18I GGWCC 1 cut(s) 430
BmgT120I GGNCC 1 cut(s) 430
BmiI GGNNCC 2 cut(s) 539, 588
BmsI GCATC 6 cut(s) 184, 198, 381, 462, 651, 792
Bpu14I TTCGAA 1 cut(s) 201
BpuEI CTTGAG 1 cut(s) 772
BsaBI GATNNNNATC 1 cut(s) 574
BsaJI CCNNGG 1 cut(s) 565
Bse1I ACTGG 3 cut(s) 14, 726, 860
Bse3DI GCAATG 2 cut(s) 160, 510
Bse8I GATNNNNATC 1 cut(s) 574
BseDI CCNNGG 1 cut(s) 565
BseGI GGATG 4 cut(s) 175, 189, 477, 666
BseJI GATNNNNATC 1 cut(s) 574
BseMI GCAATG 2 cut(s) 160, 510
BseMII CTCAG 3 cut(s) 93, 570, 872
BseNI ACTGG 3 cut(s) 14, 726, 860
BseSI GKGCMC 2 cut(s) 760, 880
BseXI GCAGC 8 cut(s) 34, 56, 162, 198, 527, 597, 878, 881
BshFI GGCC 1 cut(s) 710
BsiHKAI GWGCWC 1 cut(s) 880
BsmAI GTCTC 2 cut(s) 521, 575
BsmBI CGTCTC 1 cut(s) 575
BsnI GGCC 1 cut(s) 710
Bsp119I TTCGAA 1 cut(s) 201
Bsp1286I GDGCHC 2 cut(s) 760, 880
Bsp143I GATC 4 cut(s) 414, 507, 569, 765
BspACI CCGC 2 cut(s) 125, 348
BspANI GGCC 1 cut(s) 710
BspCNI CTCAG 3 cut(s) 94, 571, 873
BspLI GGNNCC 2 cut(s) 539, 588
BspMAI CTGCAG 1 cut(s) 360
BspPI GGATC 2 cut(s) 409, 577
BspT104I TTCGAA 1 cut(s) 201
BspTI CTTAAG 1 cut(s) 145
BsrBI CCGCTC 1 cut(s) 127
BsrDI GCAATG 2 cut(s) 160, 510
BsrI ACTGG 3 cut(s) 14, 726, 860
BssECI CCNNGG 1 cut(s) 565
BssMI GATC 4 cut(s) 414, 507, 569, 765
BssT1I CCWWGG 1 cut(s) 565
Bst4CI ACNGT 6 cut(s) 460, 586, 618, 652, 775, 947
Bst6I CTCTTC 1 cut(s) 308
BstAFI CTTAAG 1 cut(s) 145
BstAPI GCANNNNNTGC 1 cut(s) 875
BstBI TTCGAA 1 cut(s) 201
BstC8I GCNNGC 1 cut(s) 26
BstDEI CTNAG 5 cut(s) 102, 221, 426, 579, 881
BstF5I GGATG 4 cut(s) 175, 189, 477, 666
BstKTI GATC 4 cut(s) 417, 510, 572, 768
BstMAI GTCTC 2 cut(s) 521, 575
BstMBI GATC 4 cut(s) 414, 507, 569, 765
BstMWI GCNNNNNNNGC 3 cut(s) 159, 238, 875
BstNSI RCATGY 2 cut(s) 28, 199
BstSFI CTRYAG 2 cut(s) 356, 378
BstSLI GKGCMC 2 cut(s) 760, 880
BstV1I GCAGC 8 cut(s) 34, 56, 162, 198, 527, 597, 878, 881
BstX2I RGATCY 1 cut(s) 569
BstYI RGATCY 1 cut(s) 569
BsuRI GGCC 1 cut(s) 710
BtsCI GGATG 4 cut(s) 175, 189, 477, 666
BtsI GCAGTG 2 cut(s) 267, 353
BtsIMutI CAGTG 6 cut(s) 267, 353, 503, 648, 733, 878
Cac8I GCNNGC 1 cut(s) 26
Cfr13I GGNCC 1 cut(s) 430
Csp6I GTAC 2 cut(s) 619, 850
CviAII CATG 3 cut(s) 25, 196, 304
CviQI GTAC 2 cut(s) 619, 850
DdeI CTNAG 5 cut(s) 102, 221, 426, 579, 881
DpnI GATC 4 cut(s) 416, 509, 571, 767
DpnII GATC 4 cut(s) 414, 507, 569, 765
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Eco130I CCWWGG 1 cut(s) 565
Eco47I GGWCC 1 cut(s) 430
EcoO109I RGGNCCY 1 cut(s) 430
EcoRI GAATTC 1 cut(s) 64
EcoT14I CCWWGG 1 cut(s) 565
ErhI CCWWGG 1 cut(s) 565
Esp3I CGTCTC 1 cut(s) 575
FaeI CATG 3 cut(s) 28, 199, 307
FalI AAGNNNNNCTT 2 cut(s) 204, 236
FatI CATG 3 cut(s) 24, 195, 303
FauI CCCGC 1 cut(s) 355
FauNDI CATATG 1 cut(s) 236
FbaI TGATCA 1 cut(s) 507
FblI GTMKAC 1 cut(s) 133
Fnu4HI GCNGC 8 cut(s) 45, 48, 151, 187, 516, 611, 867, 870
FokI GGATG 4 cut(s) 162, 176, 484, 673
Fsp4HI GCNGC 8 cut(s) 45, 48, 151, 187, 516, 611, 867, 870
FspBI CTAG 3 cut(s) 107, 566, 842
GluI GCNGC 8 cut(s) 45, 48, 151, 187, 516, 611, 867, 870
HaeIII GGCC 1 cut(s) 710
Hin1II CATG 3 cut(s) 28, 199, 307
HincII GTYRAC 1 cut(s) 134
HindII GTYRAC 1 cut(s) 134
HinfI GANTC 1 cut(s) 340
HphI GGTGA 2 cut(s) 283, 448
Hpy166II GTNNAC 2 cut(s) 134, 878
Hpy188I TCNGA 7 cut(s) 141, 326, 339, 414, 580, 640, 682
Hpy188III TCNNGA 2 cut(s) 433, 742
Hpy8I GTNNAC 2 cut(s) 134, 878
HpyAV CCTTC 4 cut(s) 152, 288, 528, 773
HpyCH4III ACNGT 6 cut(s) 460, 586, 618, 652, 775, 947
HpyF10VI GCNNNNNNNGC 3 cut(s) 159, 238, 875
HpyF3I CTNAG 5 cut(s) 102, 221, 426, 579, 881
Hsp92II CATG 3 cut(s) 28, 199, 307
Ksp22I TGATCA 1 cut(s) 507
Kzo9I GATC 4 cut(s) 414, 507, 569, 765
LmnI GCTCC 2 cut(s) 543, 744
LpnPI CCDG 8 cut(s) 27, 284, 446, 589, 614, 739, 796, 841
Lsp1109I GCAGC 8 cut(s) 34, 56, 162, 198, 527, 597, 878, 881
LweI GCATC 6 cut(s) 184, 198, 381, 462, 651, 792
MaeI CTAG 3 cut(s) 107, 566, 842
MaeIII GTNAC 3 cut(s) 78, 97, 440
MalI GATC 4 cut(s) 416, 509, 571, 767
MbiI CCGCTC 1 cut(s) 127
MboI GATC 4 cut(s) 414, 507, 569, 765
MboII GAAGA 3 cut(s) 280, 325, 617
MflI RGATCY 1 cut(s) 569
MhlI GDGCHC 2 cut(s) 760, 880
MluCI AATT 5 cut(s) 56, 64, 331, 420, 683
MmeI TCCRAC 1 cut(s) 921
MnlI CCTC 3 cut(s) 309, 405, 921
MseI TTAA 4 cut(s) 39, 146, 251, 593
MslI CAYNNNNRTG 4 cut(s) 194, 308, 461, 695
MspA1I CMGCKG 1 cut(s) 47
MspCI CTTAAG 1 cut(s) 145
MwoI GCNNNNNNNGC 3 cut(s) 159, 238, 875
NdeI CATATG 1 cut(s) 236
NdeII GATC 4 cut(s) 414, 507, 569, 765
NlaIII CATG 3 cut(s) 28, 199, 307
NlaIV GGNNCC 2 cut(s) 539, 588
NspI RCATGY 2 cut(s) 28, 199
NspV TTCGAA 1 cut(s) 201
PaeI GCATGC 1 cut(s) 28
PciI ACATGT 1 cut(s) 195
PfeI GAWTC 1 cut(s) 340
PkrI GCNGC 8 cut(s) 46, 49, 152, 188, 517, 612, 868, 871
PpuMI RGGWCCY 1 cut(s) 430
PscI ACATGT 1 cut(s) 195
Psp5II RGGWCCY 1 cut(s) 430
PspN4I GGNNCC 2 cut(s) 539, 588
PspPI GGNCC 1 cut(s) 430
PspPPI RGGWCCY 1 cut(s) 430
PstI CTGCAG 1 cut(s) 360
PsuI RGATCY 1 cut(s) 569
PvuII CAGCTG 1 cut(s) 47
RsaI GTAC 2 cut(s) 620, 851
RsaNI GTAC 2 cut(s) 619, 850
RseI CAYNNNNRTG 4 cut(s) 194, 308, 461, 695
SalI GTCGAC 1 cut(s) 132
SaqAI TTAA 4 cut(s) 39, 146, 251, 593
SatI GCNGC 8 cut(s) 45, 48, 151, 187, 516, 611, 867, 870
Sau3AI GATC 4 cut(s) 414, 507, 569, 765
Sau96I GGNCC 1 cut(s) 430
ScaI AGTACT 1 cut(s) 851
SduI GDGCHC 2 cut(s) 760, 880
SetI ASST 8 cut(s) 49, 108, 114, 280, 432, 749, 812, 887
SfaNI GCATC 6 cut(s) 184, 198, 381, 462, 651, 792
SfcI CTRYAG 2 cut(s) 356, 378
SfuI TTCGAA 1 cut(s) 201
SinI GGWCC 1 cut(s) 430
SmiMI CAYNNNNRTG 4 cut(s) 194, 308, 461, 695
SmlI CTYRAG 2 cut(s) 145, 751
SmoI CTYRAG 2 cut(s) 145, 751
SphI GCATGC 1 cut(s) 28
Sse9I AATT 5 cut(s) 56, 64, 331, 420, 683
SsiI CCGC 2 cut(s) 125, 348
SspMI CTAG 3 cut(s) 107, 566, 842
StyI CCWWGG 1 cut(s) 565
TaaI ACNGT 6 cut(s) 460, 586, 618, 652, 775, 947
TaqI TCGA 3 cut(s) 133, 201, 281
TaqII GACCGA 1 cut(s) 484
TasI AATT 5 cut(s) 56, 64, 331, 420, 683
TatI WGTACW 2 cut(s) 618, 849
TfiI GAWTC 1 cut(s) 340
Tru1I TTAA 4 cut(s) 39, 146, 251, 593
Tru9I TTAA 4 cut(s) 39, 146, 251, 593
TscAI CASTG 6 cut(s) 267, 360, 510, 655, 733, 885
TseI GCWGC 8 cut(s) 44, 47, 150, 186, 515, 610, 866, 869
TspDTI ATGAA 7 cut(s) 102, 171, 326, 842, 846, 897, 966
TspRI CASTG 6 cut(s) 267, 360, 510, 655, 733, 885
Vha464I CTTAAG 1 cut(s) 145
VneI GTGCAC 1 cut(s) 876
VpaK11BI GGWCC 1 cut(s) 430
XapI RAATTY 2 cut(s) 64, 683
XceI RCATGY 2 cut(s) 28, 199
XmaJI CCTAGG 1 cut(s) 565
XmiI GTMKAC 1 cut(s) 133
XspI CTAG 3 cut(s) 107, 566, 842
ZrmI AGTACT 1 cut(s) 851
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.