Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001643.1

Orthogroup ID

OG0019069

Physical Location & Seq

Genomic Coordinates Reverse (-)

142637 .. 143182

Gene Structure 546 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001643.1_g000027.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atgcagcacaccaagcaatccaaacaattcacaatcgggaccgatctcatgtacatagtcaaaccacgaaaccaaaacccagtagccgactgcagttcaaaaccgtccccgaagctgtcgcatcttccagaaaaagagaagtcacaacaaatcccaccaccaatccaaggccctaagtttgatcctcacagcctgggaaacatcaaacaacatcaatccaaatctggatcgattacccgacctccgccacagccaattcagaccaagatcacaacaaatacaaaaaaacaaatctggattgtcaaatcccagactggtgagggatatgagaatcaaatcaaatggcgtcgtacggggacagaggttcgattggccaagcctgggaagcaagtccatctctccgagtccgagatcaaacagctatgtgttgcttctcggaaaatctttctccaacagcccaatttgcttgagcttgaagaagagagagagagtgtgtggaaattgcagagagagagagaggaagaagaagagagtgcgtggaattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000164 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008287 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0104004 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

181

Amino Acids

20.88

Weight (kDa)

9.52

Isoelectric Point (pI)

59.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019069)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018845 RLG00000029066
rosa_multiflora	Rmu_sc0001643.1_g000027 Rmu_sc0002550.1_g000001 Rmu_ssc0000330.1_g000038
rosa_roxburghii	Rroxscaffold_175G00432310 Rroxscaffold_1G00035620
rosa_samantha	Rh2AG325000 Rh2AG428700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	245
AclWI	GGATC	2 cut(s)	176, 235
AcoI	YGGCCR	1 cut(s)	372
AcyI	GRCGYC	1 cut(s)	346
AfaI	GTAC	2 cut(s)	53, 352
AfiI	CCNNNNNNNGG	2 cut(s)	167, 381
AgsI	TTSAA	2 cut(s)	99, 476
AjnI	CCWGG	2 cut(s)	192, 379
AluBI	AGCT	3 cut(s)	115, 421, 472
AluI	AGCT	3 cut(s)	115, 421, 472
AlwI	GGATC	2 cut(s)	176, 235
AoxI	GGCC	2 cut(s)	169, 372
ApeKI	GCWGC	1 cut(s)	4
AspS9I	GGNCC	2 cut(s)	39, 170
AsuHPI	GGTGA	1 cut(s)	329
AvaII	GGWCC	1 cut(s)	39
BalI	TGGCCA	1 cut(s)	374
BbvI	GCAGC	1 cut(s)	16
BccI	CCATC	1 cut(s)	402
BciT130I	CCWGG	2 cut(s)	194, 381
BfmI	CTRYAG	1 cut(s)	91
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	2 cut(s)	194, 381
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	2 cut(s)	39, 170
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	2 cut(s)	194, 381
BmrI	ACTGGG	1 cut(s)	74
BmsI	GCATC	1 cut(s)	130
BmuI	ACTGGG	1 cut(s)	74
BpuEI	CTTGAG	1 cut(s)	488
Bsa29I	ATCGAT	1 cut(s)	230
BsaHI	GRCGYC	1 cut(s)	346
BsaJI	CCNNGG	3 cut(s)	166, 193, 380
BsaXI	ACNNNNNCTCC	2 cut(s)	226, 256
Bsc4I	CCNNNNNNNGG	2 cut(s)	167, 381
Bse1I	ACTGG	2 cut(s)	80, 319
BseBI	CCWGG	2 cut(s)	194, 381
BseCI	ATCGAT	1 cut(s)	230
BseDI	CCNNGG	3 cut(s)	166, 193, 380
BseLI	CCNNNNNNNGG	2 cut(s)	167, 381
BseNI	ACTGG	2 cut(s)	80, 319
BseXI	GCAGC	1 cut(s)	16
BshFI	GGCC	2 cut(s)	171, 374
BshVI	ATCGAT	1 cut(s)	230
BsiWI	CGTACG	1 cut(s)	350
BslFI	GGGAC	3 cut(s)	52, 91, 370
BslI	CCNNNNNNNGG	2 cut(s)	167, 381
BsmFI	GGGAC	3 cut(s)	52, 91, 370
BsnI	GGCC	2 cut(s)	171, 374
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	5 cut(s)	43, 181, 227, 267, 411
BspACI	CCGC	1 cut(s)	245
BspANI	GGCC	2 cut(s)	171, 374
BspDI	ATCGAT	1 cut(s)	230
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	1 cut(s)	95
BspPI	GGATC	2 cut(s)	176, 235
BsrGI	TGTACA	1 cut(s)	51
BsrI	ACTGG	2 cut(s)	80, 319
BssECI	CCNNGG	3 cut(s)	166, 193, 380
BssMI	GATC	5 cut(s)	43, 181, 227, 267, 411
BssNI	GRCGYC	1 cut(s)	346
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	2 cut(s)	194, 381
Bst4CI	ACNGT	1 cut(s)	105
Bst6I	CTCTTC	2 cut(s)	474, 522
BstACI	GRCGYC	1 cut(s)	346
BstAUI	TGTACA	1 cut(s)	51
BstDEI	CTNAG	1 cut(s)	174
BstKTI	GATC	5 cut(s)	46, 184, 230, 270, 414
BstMBI	GATC	5 cut(s)	43, 181, 227, 267, 411
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 385, 463
BstNI	CCWGG	2 cut(s)	194, 381
BstSCI	CCNGG	2 cut(s)	192, 379
BstSFI	CTRYAG	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	16
Bsu15I	ATCGAT	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	171, 374
BsuTUI	ATCGAT	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	39, 170
ClaI	ATCGAT	1 cut(s)	230
CseI	GACGC	1 cut(s)	335
Csp6I	GTAC	2 cut(s)	52, 351
CviAII	CATG	1 cut(s)	49
CviQI	GTAC	2 cut(s)	52, 351
DdeI	CTNAG	1 cut(s)	174
DpnI	GATC	5 cut(s)	45, 183, 229, 269, 413
DpnII	GATC	5 cut(s)	43, 181, 227, 267, 411
EaeI	YGGCCR	1 cut(s)	372
Eam1104I	CTCTTC	2 cut(s)	474, 522
EarI	CTCTTC	2 cut(s)	474, 522
EciI	GGCGGA	1 cut(s)	234
Eco130I	CCWWGG	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	39
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	192, 379
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	1 cut(s)	52
FaiI	YATR	4 cut(s)	50, 56, 327, 424
FaqI	GGGAC	3 cut(s)	52, 91, 370
FatI	CATG	1 cut(s)	48
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	2 cut(s)	171, 374
HgaI	GACGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	346
Hin1II	CATG	1 cut(s)	52
HinfI	GANTC	2 cut(s)	331, 404
HphI	GGTGA	1 cut(s)	329
Hpy188I	TCNGA	4 cut(s)	261, 403, 409, 438
Hpy188III	TCNNGA	4 cut(s)	37, 128, 225, 295
Hpy99I	CGWCG	1 cut(s)	351
HpyCH4III	ACNGT	1 cut(s)	105
HpyCH4V	TGCA	3 cut(s)	4, 93, 505
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 385, 463
HpyF3I	CTNAG	1 cut(s)	174
Hsp92I	GRCGYC	1 cut(s)	346
Hsp92II	CATG	1 cut(s)	52
Kzo9I	GATC	5 cut(s)	43, 181, 227, 267, 411
Lsp1109I	GCAGC	1 cut(s)	16
LweI	GCATC	1 cut(s)	130
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	5 cut(s)	45, 183, 229, 269, 413
MboI	GATC	5 cut(s)	43, 181, 227, 267, 411
MboII	GAAGA	6 cut(s)	116, 488, 491, 533, 536, 539
MlsI	TGGCCA	1 cut(s)	374
MluCI	AATT	5 cut(s)	26, 255, 460, 500, 541
MluNI	TGGCCA	1 cut(s)	374
MlyI	GAGTC	1 cut(s)	413
MmeI	TCCRAC	1 cut(s)	475
MnlI	CCTC	5 cut(s)	195, 252, 313, 355, 511
Mox20I	TGGCCA	1 cut(s)	374
MscI	TGGCCA	1 cut(s)	374
MseI	TTAA	1 cut(s)	544
Msp20I	TGGCCA	1 cut(s)	374
MspR9I	CCNGG	2 cut(s)	194, 381
MvaI	CCWGG	2 cut(s)	194, 381
MwoI	GCNNNNNNNGC	3 cut(s)	13, 385, 463
NdeII	GATC	5 cut(s)	43, 181, 227, 267, 411
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	141
PfeI	GAWTC	1 cut(s)	331
Pfl23II	CGTACG	1 cut(s)	350
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	412
PpsI	GAGTC	1 cut(s)	412
Psp6I	CCWGG	2 cut(s)	192, 379
PspGI	CCWGG	2 cut(s)	192, 379
PspLI	CGTACG	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	2 cut(s)	39, 170
PstI	CTGCAG	1 cut(s)	95
RsaI	GTAC	2 cut(s)	53, 352
RsaNI	GTAC	2 cut(s)	52, 351
SaqAI	TTAA	1 cut(s)	544
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	5 cut(s)	43, 181, 227, 267, 411
Sau96I	GGNCC	2 cut(s)	39, 170
SchI	GAGTC	1 cut(s)	413
ScrFI	CCNGG	2 cut(s)	194, 381
SetI	ASST	5 cut(s)	117, 244, 366, 423, 474
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	1 cut(s)	91
SinI	GGWCC	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	467
SmoI	CTYRAG	1 cut(s)	467
Sse9I	AATT	5 cut(s)	26, 255, 460, 500, 541
SsiI	CCGC	1 cut(s)	245
StyD4I	CCNGG	2 cut(s)	192, 379
StyI	CCWWGG	1 cut(s)	166
TaaI	ACNGT	1 cut(s)	105
TaqI	TCGA	2 cut(s)	230, 367
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	5 cut(s)	26, 255, 460, 500, 541
TatI	WGTACW	1 cut(s)	51
TfiI	GAWTC	1 cut(s)	331
Tru1I	TTAA	1 cut(s)	544
Tru9I	TTAA	1 cut(s)	544
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	1 cut(s)	4
Tsp45I	GTSAC	1 cut(s)	141
VpaK11BI	GGWCC	1 cut(s)	39

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.