Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000330.1

Orthogroup ID

OG0019069

Physical Location & Seq

Genomic Coordinates Reverse (-)

218342 .. 219233

Gene Structure 892 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000330.1_g000038.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

atggagggttttgtcgtcggagatgaagaccatgaactgggagtcggcgaagaaggcgaggacatcatcgatattaccatcaccattgacggcaatagagatgcagcacaccaagcaatccaaacaattcacaatcgggaccgatctcgtgtacaaagtcagaccaccaaaccaaaaactcgtcgccgtctgcagttcaaaactgtccccgaagccatcgcatcgtccagaaaaagtgacggtctcgattgtgccacatcttccagaaaaaaaaaaaaagcagtctgcagttcaaaaccaaaacccggttgccgtcgcatcgcaccaccaatcaaggccctaactccgatgctcacagcctgggaaacatcaaacaacatcaatccaaatctggatcgattacccgacctccgccacagccaatttagaccaagatcacaacaaatacaaaaagataaatctggattgtcaaatccccaactggtgagggatctgagaatcaaatcaaatggcgtcgtccaattggccaggcctgggaagcaggtccatctctctgagtctgagatcaaacaactatgtgttgcttgtgggaaaatttttctccagcagcccaatttgctcgagcttgaagaagagatagagagtggaaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000164 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008287 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0104004 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

217

Amino Acids

24.22

Weight (kDa)

9.28

Isoelectric Point (pI)

57.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019069)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018845 RLG00000029066
rosa_multiflora	Rmu_sc0001643.1_g000027 Rmu_sc0002550.1_g000001 Rmu_ssc0000330.1_g000038
rosa_roxburghii	Rroxscaffold_175G00432310 Rroxscaffold_1G00035620
rosa_samantha	Rh2AG325000 Rh2AG428700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	532
AccB7I	CCANNNNNTGG	1 cut(s)	37
AciI	CCGC	1 cut(s)	412
AclWI	GGATC	2 cut(s)	402, 498
AcoI	YGGCCR	1 cut(s)	525
AcsI	RAATTY	1 cut(s)	594
AcyI	GRCGYC	1 cut(s)	513
AfaI	GTAC	1 cut(s)	153
AfiI	CCNNNNNNNGG	3 cut(s)	37, 305, 534
AgsI	TTSAA	3 cut(s)	199, 294, 629
AjnI	CCWGG	3 cut(s)	359, 527, 532
AluBI	AGCT	1 cut(s)	625
AluI	AGCT	1 cut(s)	625
Alw26I	GTCTC	1 cut(s)	248
AlwI	GGATC	2 cut(s)	402, 498
Ama87I	CYCGRG	1 cut(s)	620
AoxI	GGCC	3 cut(s)	336, 525, 530
ApeKI	GCWGC	2 cut(s)	104, 607
ApoI	RAATTY	1 cut(s)	594
AspS9I	GGNCC	3 cut(s)	139, 337, 544
AsuC2I	CCSGG	1 cut(s)	306
AsuHPI	GGTGA	2 cut(s)	73, 496
AvaI	CYCGRG	1 cut(s)	620
AvaII	GGWCC	2 cut(s)	139, 544
BalI	TGGCCA	1 cut(s)	527
BauI	CACGAG	1 cut(s)	147
BbsI	GAAGAC	1 cut(s)	33
BbvI	GCAGC	2 cut(s)	116, 619
BccI	CCATC	3 cut(s)	86, 224, 555
BceAI	ACGGC	3 cut(s)	106, 171, 297
BciT130I	CCWGG	3 cut(s)	361, 529, 534
BcnI	CCSGG	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	248
BfmI	CTRYAG	2 cut(s)	191, 286
BfuAI	ACCTGC	1 cut(s)	532
BisI	GCNGC	2 cut(s)	105, 608
BlsI	GCNGC	2 cut(s)	106, 609
Bme1390I	CCNGG	4 cut(s)	306, 361, 529, 534
Bme18I	GGWCC	2 cut(s)	139, 544
BmeT110I	CYCGRG	1 cut(s)	620
BmgT120I	GGNCC	3 cut(s)	139, 337, 544
BmiI	GGNNCC	1 cut(s)	140
BmrFI	CCNGG	4 cut(s)	306, 361, 529, 534
BmrI	ACTGGG	1 cut(s)	47
BmsI	GCATC	4 cut(s)	91, 230, 327, 339
BmuI	ACTGGG	1 cut(s)	47
BpiI	GAAGAC	1 cut(s)	33
BpmI	CTGGAG	1 cut(s)	587
BpuMI	CCSGG	1 cut(s)	306
Bsa29I	ATCGAT	2 cut(s)	69, 397
BsaHI	GRCGYC	1 cut(s)	513
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	360, 533
BsaXI	ACNNNNNCTCC	2 cut(s)	393, 423
Bsc4I	CCNNNNNNNGG	3 cut(s)	37, 305, 534
Bse1I	ACTGG	2 cut(s)	42, 486
BseBI	CCWGG	3 cut(s)	361, 529, 534
BseCI	ATCGAT	2 cut(s)	69, 397
BseDI	CCNNGG	2 cut(s)	360, 533
BseLI	CCNNNNNNNGG	3 cut(s)	37, 305, 534
BseMII	CTCAG	3 cut(s)	485, 546, 552
BseNI	ACTGG	2 cut(s)	42, 486
BseXI	GCAGC	2 cut(s)	116, 619
BshFI	GGCC	3 cut(s)	338, 527, 532
BshVI	ATCGAT	2 cut(s)	69, 397
BsiHKCI	CYCGRG	1 cut(s)	620
BsiSI	CCGG	1 cut(s)	306
BslFI	GGGAC	2 cut(s)	152, 191
BslI	CCNNNNNNNGG	3 cut(s)	37, 305, 534
BsmAI	GTCTC	1 cut(s)	248
BsmFI	GGGAC	2 cut(s)	152, 191
BsnI	GGCC	3 cut(s)	338, 527, 532
Bso31I	GGTCTC	1 cut(s)	248
BsoBI	CYCGRG	1 cut(s)	620
Bsp1407I	TGTACA	1 cut(s)	151
Bsp143I	GATC	5 cut(s)	143, 394, 434, 490, 564
BspACI	CCGC	1 cut(s)	412
BspANI	GGCC	3 cut(s)	338, 527, 532
BspCNI	CTCAG	3 cut(s)	486, 547, 553
BspDI	ATCGAT	2 cut(s)	69, 397
BspLI	GGNNCC	1 cut(s)	140
BspMAI	CTGCAG	2 cut(s)	195, 290
BspMI	ACCTGC	1 cut(s)	532
BspPI	GGATC	2 cut(s)	402, 498
BspTNI	GGTCTC	1 cut(s)	248
BsrGI	TGTACA	1 cut(s)	151
BsrI	ACTGG	2 cut(s)	42, 486
BssECI	CCNNGG	2 cut(s)	360, 533
BssMI	GATC	5 cut(s)	143, 394, 434, 490, 564
BssNI	GRCGYC	1 cut(s)	513
BssSI	CACGAG	1 cut(s)	147
Bst2BI	CACGAG	1 cut(s)	147
Bst2UI	CCWGG	3 cut(s)	361, 529, 534
Bst4CI	ACNGT	2 cut(s)	205, 242
Bst6I	CTCTTC	1 cut(s)	627
BstACI	GRCGYC	1 cut(s)	513
BstAUI	TGTACA	1 cut(s)	151
BstDEI	CTNAG	3 cut(s)	494, 555, 561
BstKTI	GATC	5 cut(s)	146, 397, 437, 493, 567
BstMAI	GTCTC	1 cut(s)	248
BstMBI	GATC	5 cut(s)	143, 394, 434, 490, 564
BstMWI	GCNNNNNNNGC	4 cut(s)	54, 113, 538, 616
BstNI	CCWGG	3 cut(s)	361, 529, 534
BstSCI	CCNGG	4 cut(s)	304, 359, 527, 532
BstSFI	CTRYAG	2 cut(s)	191, 286
BstV1I	GCAGC	2 cut(s)	116, 619
BstV2I	GAAGAC	1 cut(s)	33
BstX2I	RGATCY	1 cut(s)	490
BstYI	RGATCY	1 cut(s)	490
Bsu15I	ATCGAT	2 cut(s)	69, 397
BsuRI	GGCC	3 cut(s)	338, 527, 532
BsuTUI	ATCGAT	2 cut(s)	69, 397
BtgZI	GCGATG	2 cut(s)	202, 304
BveI	ACCTGC	1 cut(s)	532
Cfr13I	GGNCC	3 cut(s)	139, 337, 544
ClaI	ATCGAT	2 cut(s)	69, 397
CseI	GACGC	1 cut(s)	502
Csp6I	GTAC	1 cut(s)	152
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	8 cut(s)	215, 338, 359, 420, 527, 532, 610, 625
CviKI_1	RGCY	8 cut(s)	215, 338, 359, 420, 527, 532, 610, 625
CviQI	GTAC	1 cut(s)	152
DdeI	CTNAG	3 cut(s)	494, 555, 561
DpnI	GATC	5 cut(s)	145, 396, 436, 492, 566
DpnII	GATC	5 cut(s)	143, 394, 434, 490, 564
EaeI	YGGCCR	1 cut(s)	525
Eam1104I	CTCTTC	1 cut(s)	627
EarI	CTCTTC	1 cut(s)	627
EciI	GGCGGA	1 cut(s)	401
Eco147I	AGGCCT	1 cut(s)	532
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	139, 544
Eco88I	CYCGRG	1 cut(s)	620
EcoO109I	RGGNCCY	1 cut(s)	337
EcoRII	CCWGG	3 cut(s)	359, 527, 532
FaeI	CATG	1 cut(s)	35
FaiI	YATR	2 cut(s)	33, 577
FaqI	GGGAC	2 cut(s)	152, 191
FatI	CATG	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	105, 608
Fsp4HI	GCNGC	2 cut(s)	105, 608
GluI	GCNGC	2 cut(s)	105, 608
GsuI	CTGGAG	1 cut(s)	587
HaeIII	GGCC	3 cut(s)	338, 527, 532
HapII	CCGG	1 cut(s)	306
HgaI	GACGC	1 cut(s)	502
Hin1I	GRCGYC	1 cut(s)	513
Hin1II	CATG	1 cut(s)	35
HinfI	GANTC	3 cut(s)	42, 498, 557
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	2 cut(s)	73, 496
Hpy166II	GTNNAC	1 cut(s)	152
Hpy188I	TCNGA	6 cut(s)	20, 162, 348, 495, 556, 562
Hpy188III	TCNNGA	6 cut(s)	137, 228, 245, 264, 392, 462
Hpy8I	GTNNAC	1 cut(s)	152
Hpy99I	CGWCG	4 cut(s)	20, 186, 318, 518
HpyAV	CCTTC	1 cut(s)	47
HpyCH4III	ACNGT	2 cut(s)	205, 242
HpyCH4V	TGCA	3 cut(s)	104, 193, 288
HpyF10VI	GCNNNNNNNGC	4 cut(s)	54, 113, 538, 616
HpyF3I	CTNAG	3 cut(s)	494, 555, 561
Hsp92I	GRCGYC	1 cut(s)	513
Hsp92II	CATG	1 cut(s)	35
Kzo9I	GATC	5 cut(s)	143, 394, 434, 490, 564
Lsp1109I	GCAGC	2 cut(s)	116, 619
LweI	GCATC	4 cut(s)	91, 230, 327, 339
MaeIII	GTNAC	1 cut(s)	236
MalI	GATC	5 cut(s)	145, 396, 436, 492, 566
MboI	GATC	5 cut(s)	143, 394, 434, 490, 564
MboII	GAAGA	5 cut(s)	38, 62, 252, 641, 644
MfeI	CAATTG	1 cut(s)	521
MflI	RGATCY	1 cut(s)	490
MlsI	TGGCCA	1 cut(s)	527
MluCI	AATT	6 cut(s)	126, 422, 521, 594, 613, 649
MluNI	TGGCCA	1 cut(s)	527
MlyI	GAGTC	2 cut(s)	51, 566
MnlI	CCTC	3 cut(s)	52, 419, 480
Mox20I	TGGCCA	1 cut(s)	527
MscI	TGGCCA	1 cut(s)	527
Msp20I	TGGCCA	1 cut(s)	527
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	4 cut(s)	306, 361, 529, 534
MunI	CAATTG	1 cut(s)	521
MvaI	CCWGG	3 cut(s)	361, 529, 534
MwoI	GCNNNNNNNGC	4 cut(s)	54, 113, 538, 616
NciI	CCSGG	1 cut(s)	306
NdeII	GATC	5 cut(s)	143, 394, 434, 490, 564
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	140
NmuCI	GTSAC	1 cut(s)	236
PaeR7I	CTCGAG	1 cut(s)	620
PceI	AGGCCT	1 cut(s)	532
PfeI	GAWTC	1 cut(s)	498
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	2 cut(s)	106, 609
PleI	GAGTC	2 cut(s)	50, 565
PpsI	GAGTC	2 cut(s)	50, 565
Psp6I	CCWGG	3 cut(s)	359, 527, 532
PspGI	CCWGG	3 cut(s)	359, 527, 532
PspN4I	GGNNCC	1 cut(s)	140
PspPI	GGNCC	3 cut(s)	139, 337, 544
PspXI	VCTCGAGB	1 cut(s)	620
PstI	CTGCAG	2 cut(s)	195, 290
PsuI	RGATCY	1 cut(s)	490
RsaI	GTAC	1 cut(s)	153
RsaNI	GTAC	1 cut(s)	152
SatI	GCNGC	2 cut(s)	105, 608
Sau3AI	GATC	5 cut(s)	143, 394, 434, 490, 564
Sau96I	GGNCC	3 cut(s)	139, 337, 544
SchI	GAGTC	2 cut(s)	51, 566
ScrFI	CCNGG	4 cut(s)	306, 361, 529, 534
SetI	ASST	3 cut(s)	411, 546, 627
SfaNI	GCATC	4 cut(s)	91, 230, 327, 339
SfcI	CTRYAG	2 cut(s)	191, 286
Sfr274I	CTCGAG	1 cut(s)	620
SinI	GGWCC	2 cut(s)	139, 544
SlaI	CTCGAG	1 cut(s)	620
SmlI	CTYRAG	1 cut(s)	620
SmoI	CTYRAG	1 cut(s)	620
Sse9I	AATT	6 cut(s)	126, 422, 521, 594, 613, 649
SseBI	AGGCCT	1 cut(s)	532
SsiI	CCGC	1 cut(s)	412
StuI	AGGCCT	1 cut(s)	532
StyD4I	CCNGG	4 cut(s)	304, 359, 527, 532
TaaI	ACNGT	2 cut(s)	205, 242
TaqI	TCGA	4 cut(s)	69, 246, 397, 621
TaqII	GACCGA	1 cut(s)	156
TasI	AATT	6 cut(s)	126, 422, 521, 594, 613, 649
TatI	WGTACW	1 cut(s)	151
TfiI	GAWTC	1 cut(s)	498
TseFI	GTSAC	1 cut(s)	236
TseI	GCWGC	2 cut(s)	104, 607
Tsp45I	GTSAC	1 cut(s)	236
TspDTI	ATGAA	2 cut(s)	39, 48
Van91I	CCANNNNNTGG	1 cut(s)	37
VpaK11BI	GGWCC	2 cut(s)	139, 544
XapI	RAATTY	1 cut(s)	594
XhoI	CTCGAG	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.