Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002550.1

Orthogroup ID

OG0019069

Physical Location & Seq

Genomic Coordinates Forward (+)

2505 .. 4304

Gene Structure 1800 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002550.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgcagcacaccaagcaatccaaacaattcacaatcgggaccaatctcatgtacatagtcaaaccacgaaaccaacacccggtcgccgactgcagttcaaaaccatctccgaagccgtcgcatcttccagaaaaagagaagtcacaacaaatcccaccaccaatccaaggccctaagttcgatcctcacaccctgggaaacatcaatccaaatctggatcaattacccgacctccgccacagccaattcagaccaagatcacaacaaatacaaaaaaaacaaatctggattgtcaaaccccagactggtgagggatctgagaatcaaatcaaatggcgtcgtacggggacggaagttcgattggccaagcttgggaagcaagtccatctctccgagtccgagatcaaacaactatgtgttgcttctcggaaaatctttctcctgcagcccaatttgctcgagcttgaagaagagagagaaatagtgtggaaattagcagagagagagagagagagaaaggaagaagaagaagagaatcagagtggaggtttttcgatcgggtttggggtgttgggagctggtatgaagaagggggtggttgggaggggcggcgctcctggttggaaggatgtggatgatggagggatggagggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000164 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006464 GO:0006468 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0008287 GO:0009314 GO:0009416 GO:0009628 GO:0009639 GO:0009987 GO:0010017 GO:0010114 GO:0010161 GO:0016310 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0019538 GO:0023052 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071214 GO:0071478 GO:0071482 GO:0071489 GO:0071491 GO:0071704 GO:0104004 GO:0140096 GO:1901564 GO:1902494 GO:1903293

KEGG Pathways

Metabolic & Signaling

ko03015 ko04022 ko04024 ko04113 ko04114 ko04218 ko04261 ko04270 ko04390 ko04510 ko04611 ko04720 ko04728 ko04750 ko04810 ko04910 ko04921 ko04931 ko05031 ko05034 ko05168 ko05205 map03015 map04022 map04024 map04113 map04114 map04218 map04261 map04270 map04390 map04510 map04611 map04720 map04728 map04750 map04810 map04910 map04921 map04931 map05031 map05034 map05168 map05205

Pfam Domains

Protein Families

Metallophos STPPase_N

Protein Analysis

218

Amino Acids

24.64

Weight (kDa)

9.3

Isoelectric Point (pI)

51.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019069)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018845 RLG00000029066
rosa_multiflora	Rmu_sc0001643.1_g000027 Rmu_sc0002550.1_g000001 Rmu_ssc0000330.1_g000038
rosa_roxburghii	Rroxscaffold_175G00432310 Rroxscaffold_1G00035620
rosa_samantha	Rh2AG325000 Rh2AG428700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	235, 609
AclWI	GGATC	3 cut(s)	176, 225, 322
AcoI	YGGCCR	1 cut(s)	363
AcyI	GRCGYC	1 cut(s)	337
AfaI	GTAC	2 cut(s)	53, 343
AfiI	CCNNNNNNNGG	4 cut(s)	79, 167, 305, 372
AgsI	TTSAA	2 cut(s)	99, 467
AjnI	CCWGG	2 cut(s)	192, 616
AluBI	AGCT	3 cut(s)	370, 463, 578
AluI	AGCT	3 cut(s)	370, 463, 578
AlwI	GGATC	3 cut(s)	176, 225, 322
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	2 cut(s)	169, 363
ApeKI	GCWGC	2 cut(s)	4, 445
AspLEI	GCGC	1 cut(s)	614
AspS9I	GGNCC	2 cut(s)	39, 170
AsuC2I	CCSGG	1 cut(s)	80
AsuHPI	GGTGA	1 cut(s)	320
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	39
BalI	TGGCCA	1 cut(s)	365
BbvI	GCAGC	2 cut(s)	16, 457
BccI	CCATC	4 cut(s)	112, 393, 632, 640
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	2 cut(s)	194, 618
BcnI	CCSGG	1 cut(s)	80
BfmI	CTRYAG	2 cut(s)	91, 443
BfoI	RGCGCY	1 cut(s)	615
BisI	GCNGC	3 cut(s)	5, 446, 610
BlsI	GCNGC	3 cut(s)	6, 447, 611
Bme1390I	CCNGG	3 cut(s)	80, 194, 618
Bme18I	GGWCC	1 cut(s)	39
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	39, 170
BmiI	GGNNCC	1 cut(s)	40
BmrFI	CCNGG	3 cut(s)	80, 194, 618
BmsI	GCATC	1 cut(s)	130
BpuMI	CCSGG	1 cut(s)	80
BsaHI	GRCGYC	1 cut(s)	337
BsaJI	CCNNGG	3 cut(s)	166, 192, 193
BsaXI	ACNNNNNCTCC	2 cut(s)	216, 246
Bsc4I	CCNNNNNNNGG	4 cut(s)	79, 167, 305, 372
Bse1I	ACTGG	1 cut(s)	310
BseBI	CCWGG	2 cut(s)	194, 618
BseDI	CCNNGG	3 cut(s)	166, 192, 193
BseGI	GGATG	3 cut(s)	634, 640, 651
BseLI	CCNNNNNNNGG	4 cut(s)	79, 167, 305, 372
BseMII	CTCAG	1 cut(s)	309
BseNI	ACTGG	1 cut(s)	310
BseXI	GCAGC	2 cut(s)	16, 457
Bsh1285I	CGRYCG	2 cut(s)	84, 558
BshFI	GGCC	2 cut(s)	171, 365
BsiEI	CGRYCG	2 cut(s)	84, 558
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	80
BsiWI	CGTACG	1 cut(s)	341
BslFI	GGGAC	2 cut(s)	52, 361
BslI	CCNNNNNNNGG	4 cut(s)	79, 167, 305, 372
BsmFI	GGGAC	2 cut(s)	52, 361
BsnI	GGCC	2 cut(s)	171, 365
BsoBI	CYCGRG	1 cut(s)	458
Bsp1407I	TGTACA	1 cut(s)	51
Bsp143I	GATC	6 cut(s)	181, 217, 257, 314, 402, 555
BspACI	CCGC	2 cut(s)	235, 609
BspANI	GGCC	2 cut(s)	171, 365
BspCNI	CTCAG	1 cut(s)	310
BspLI	GGNNCC	1 cut(s)	40
BspMAI	CTGCAG	2 cut(s)	95, 447
BspPI	GGATC	3 cut(s)	176, 225, 322
BsrGI	TGTACA	1 cut(s)	51
BsrI	ACTGG	1 cut(s)	310
BssECI	CCNNGG	3 cut(s)	166, 192, 193
BssMI	GATC	6 cut(s)	181, 217, 257, 314, 402, 555
BssNI	GRCGYC	1 cut(s)	337
BssT1I	CCWWGG	1 cut(s)	166
Bst2UI	CCWGG	2 cut(s)	194, 618
Bst6I	CTCTTC	2 cut(s)	465, 525
BstACI	GRCGYC	1 cut(s)	337
BstAUI	TGTACA	1 cut(s)	51
BstDEI	CTNAG	2 cut(s)	174, 318
BstF5I	GGATG	3 cut(s)	634, 640, 651
BstH2I	RGCGCY	1 cut(s)	615
BstHHI	GCGC	1 cut(s)	614
BstKTI	GATC	6 cut(s)	184, 220, 260, 317, 405, 558
BstMBI	GATC	6 cut(s)	181, 217, 257, 314, 402, 555
BstMCI	CGRYCG	2 cut(s)	84, 558
BstMWI	GCNNNNNNNGC	3 cut(s)	13, 376, 454
BstNI	CCWGG	2 cut(s)	194, 618
BstSCI	CCNGG	3 cut(s)	78, 192, 616
BstSFI	CTRYAG	2 cut(s)	91, 443
BstV1I	GCAGC	2 cut(s)	16, 457
BstX2I	RGATCY	1 cut(s)	314
BstYI	RGATCY	1 cut(s)	314
BsuRI	GGCC	2 cut(s)	171, 365
BtsCI	GGATG	3 cut(s)	634, 640, 651
CfoI	GCGC	1 cut(s)	614
Cfr13I	GGNCC	2 cut(s)	39, 170
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	2 cut(s)	52, 342
CviAII	CATG	1 cut(s)	49
CviJI	RGCY	8 cut(s)	115, 171, 243, 365, 370, 448, 463, 578
CviKI_1	RGCY	8 cut(s)	115, 171, 243, 365, 370, 448, 463, 578
CviQI	GTAC	2 cut(s)	52, 342
DdeI	CTNAG	2 cut(s)	174, 318
DpnI	GATC	6 cut(s)	183, 219, 259, 316, 404, 557
DpnII	GATC	6 cut(s)	181, 217, 257, 314, 402, 555
EaeI	YGGCCR	1 cut(s)	363
Eam1104I	CTCTTC	2 cut(s)	465, 525
EarI	CTCTTC	2 cut(s)	465, 525
EciI	GGCGGA	1 cut(s)	224
Eco130I	CCWWGG	1 cut(s)	166
Eco47I	GGWCC	1 cut(s)	39
Eco88I	CYCGRG	1 cut(s)	458
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	192, 616
EcoT14I	CCWWGG	1 cut(s)	166
ErhI	CCWWGG	1 cut(s)	166
FaeI	CATG	1 cut(s)	52
FaiI	YATR	4 cut(s)	50, 56, 415, 584
FaqI	GGGAC	2 cut(s)	52, 361
FatI	CATG	1 cut(s)	48
Fnu4HI	GCNGC	3 cut(s)	5, 446, 610
FokI	GGATG	2 cut(s)	641, 647
Fsp4HI	GCNGC	3 cut(s)	5, 446, 610
GlaI	GCGC	1 cut(s)	613
GluI	GCNGC	3 cut(s)	5, 446, 610
HaeII	RGCGCY	1 cut(s)	615
HaeIII	GGCC	2 cut(s)	171, 365
HapII	CCGG	1 cut(s)	80
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	1 cut(s)	614
Hin1I	GRCGYC	1 cut(s)	337
Hin1II	CATG	1 cut(s)	52
Hin6I	GCGC	1 cut(s)	612
HinP1I	GCGC	1 cut(s)	612
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	3 cut(s)	322, 395, 535
HpaII	CCGG	1 cut(s)	80
HphI	GGTGA	1 cut(s)	320
Hpy188I	TCNGA	7 cut(s)	111, 251, 319, 394, 400, 429, 540
Hpy188III	TCNNGA	4 cut(s)	37, 128, 215, 286
Hpy99I	CGWCG	2 cut(s)	121, 342
HpyAV	CCTTC	2 cut(s)	583, 619
HpyCH4V	TGCA	3 cut(s)	4, 93, 445
HpyF10VI	GCNNNNNNNGC	3 cut(s)	13, 376, 454
HpyF3I	CTNAG	2 cut(s)	174, 318
Hsp92I	GRCGYC	1 cut(s)	337
Hsp92II	CATG	1 cut(s)	52
HspAI	GCGC	1 cut(s)	612
Kzo9I	GATC	6 cut(s)	181, 217, 257, 314, 402, 555
LmnI	GCTCC	2 cut(s)	575, 619
Lsp1109I	GCAGC	2 cut(s)	16, 457
LweI	GCATC	1 cut(s)	130
MaeIII	GTNAC	1 cut(s)	141
MalI	GATC	6 cut(s)	183, 219, 259, 316, 404, 557
MboI	GATC	6 cut(s)	181, 217, 257, 314, 402, 555
MboII	GAAGA	8 cut(s)	116, 479, 482, 533, 536, 539, 542, 598
MflI	RGATCY	1 cut(s)	314
MlsI	TGGCCA	1 cut(s)	365
MluCI	AATT	5 cut(s)	26, 221, 245, 451, 491
MluNI	TGGCCA	1 cut(s)	365
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	1 cut(s)	602
MnlI	CCTC	7 cut(s)	195, 242, 304, 539, 597, 635, 643
Mox20I	TGGCCA	1 cut(s)	365
MscI	TGGCCA	1 cut(s)	365
Msp20I	TGGCCA	1 cut(s)	365
MspI	CCGG	1 cut(s)	80
MspR9I	CCNGG	3 cut(s)	80, 194, 618
MvaI	CCWGG	2 cut(s)	194, 618
MwoI	GCNNNNNNNGC	3 cut(s)	13, 376, 454
NciI	CCSGG	1 cut(s)	80
NdeII	GATC	6 cut(s)	181, 217, 257, 314, 402, 555
NlaIII	CATG	1 cut(s)	52
NlaIV	GGNNCC	1 cut(s)	40
NmuCI	GTSAC	1 cut(s)	141
PaeR7I	CTCGAG	1 cut(s)	458
PasI	CCCWGGG	1 cut(s)	193
PfeI	GAWTC	2 cut(s)	322, 535
Pfl23II	CGTACG	1 cut(s)	341
PkrI	GCNGC	3 cut(s)	6, 447, 611
Ple19I	CGATCG	1 cut(s)	558
PleI	GAGTC	1 cut(s)	403
PpsI	GAGTC	1 cut(s)	403
Psp6I	CCWGG	2 cut(s)	192, 616
PspGI	CCWGG	2 cut(s)	192, 616
PspLI	CGTACG	1 cut(s)	341
PspN4I	GGNNCC	1 cut(s)	40
PspPI	GGNCC	2 cut(s)	39, 170
PspXI	VCTCGAGB	1 cut(s)	458
PstI	CTGCAG	2 cut(s)	95, 447
PsuI	RGATCY	1 cut(s)	314
PvuI	CGATCG	1 cut(s)	558
RsaI	GTAC	2 cut(s)	53, 343
RsaNI	GTAC	2 cut(s)	52, 342
SatI	GCNGC	3 cut(s)	5, 446, 610
Sau3AI	GATC	6 cut(s)	181, 217, 257, 314, 402, 555
Sau96I	GGNCC	2 cut(s)	39, 170
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	3 cut(s)	80, 194, 618
SetI	ASST	5 cut(s)	234, 372, 465, 550, 580
SfaNI	GCATC	1 cut(s)	130
SfcI	CTRYAG	2 cut(s)	91, 443
Sfr274I	CTCGAG	1 cut(s)	458
SinI	GGWCC	1 cut(s)	39
SlaI	CTCGAG	1 cut(s)	458
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	5 cut(s)	26, 221, 245, 451, 491
SsiI	CCGC	2 cut(s)	235, 609
StyD4I	CCNGG	3 cut(s)	78, 192, 616
StyI	CCWWGG	1 cut(s)	166
TaqI	TCGA	4 cut(s)	180, 358, 459, 554
TasI	AATT	5 cut(s)	26, 221, 245, 451, 491
TatI	WGTACW	1 cut(s)	51
TauI	GCSGC	1 cut(s)	612
TfiI	GAWTC	2 cut(s)	322, 535
TseFI	GTSAC	1 cut(s)	141
TseI	GCWGC	2 cut(s)	4, 445
Tsp45I	GTSAC	1 cut(s)	141
TspDTI	ATGAA	1 cut(s)	599
TspGWI	ACGGA	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	39
XhoI	CTCGAG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.