Rroxscaffold_1G00035620

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0019069
Physical Location & Seq
Reverse (-)
51732321 .. 51733303
983 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00035620.1

Sequence Viewer

Length: 384 bp
ATGCATAGGATTCCGCTCACCGACTCTTCGACACTTCATGTAGAGGGATTCTCTTACAGGTTGCAGTCTCCAAAAGCTTCGGCCATCTCGTCGTGGAGTACACAGCTTCTGCAATCGCAAAGCCCGTCACTGCCACCCATTGAGCAAGGAACTACTTTCCCCTGCCGTGATCAGACCACTGGTAGTTCGTTTGCCGTCTCCCAATTAGAATCCTTCCACGCCAGCAATTCCAGTTCATCACAGGCCTTGAGTCGTGCTCTGCTTAGTCGGATTCAACCTAGATCCTGGACAGAGGTTTCCCCTATTAACAGCCTCCATCGCGAAACTCTGACACCTGAAAATCCATTCTTCTTTCCAAAGATTGTAGAGAGAAAGGATGGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

127

Amino Acids

14.09

Weight (kDa)

8.0

Isoelectric Point (pI)

75.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 16
AccII CGCG 1 cut(s) 321
AciI CCGC 1 cut(s) 14
AclWI GGATC 1 cut(s) 276
AcoI YGGCCR 1 cut(s) 81
AfaI GTAC 1 cut(s) 100
AgsI TTSAA 1 cut(s) 275
AjnI CCWGG 1 cut(s) 284
AluBI AGCT 2 cut(s) 77, 106
AluI AGCT 2 cut(s) 77, 106
Alw21I GWGCWC 1 cut(s) 259
Alw26I GTCTC 2 cut(s) 72, 202
AlwI GGATC 1 cut(s) 276
AlwNI CAGNNNCTG 1 cut(s) 109
AoxI GGCC 2 cut(s) 81, 243
AsuHPI GGTGA 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 259
BccI CCATC 3 cut(s) 92, 324, 371
BceAI ACGGC 2 cut(s) 150, 179
BciT130I CCWGG 1 cut(s) 286
BclI TGATCA 1 cut(s) 169
BcoDI GTCTC 2 cut(s) 72, 202
BfaI CTAG 1 cut(s) 279
Bme1390I CCNGG 1 cut(s) 286
BmrFI CCNGG 1 cut(s) 286
BplI GAGNNNNNCTC 4 cut(s) 35, 67, 241, 273
BpuEI CTTGAG 1 cut(s) 268
Bse1I ACTGG 2 cut(s) 184, 231
BseBI CCWGG 1 cut(s) 286
BseGI GGATG 1 cut(s) 382
BseNI ACTGG 2 cut(s) 184, 231
Bsh1236I CGCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 83, 245
BsiHKAI GWGCWC 1 cut(s) 259
BsmAI GTCTC 2 cut(s) 72, 202
BsmBI CGTCTC 1 cut(s) 202
BsnI GGCC 2 cut(s) 83, 245
Bsp1286I GDGCHC 1 cut(s) 259
Bsp143I GATC 2 cut(s) 169, 281
Bsp68I TCGCGA 1 cut(s) 321
BspACI CCGC 1 cut(s) 14
BspANI GGCC 2 cut(s) 83, 245
BspFNI CGCG 1 cut(s) 321
BspPI GGATC 1 cut(s) 276
BsrBI CCGCTC 1 cut(s) 16
BsrI ACTGG 2 cut(s) 184, 231
BssMI GATC 2 cut(s) 169, 281
Bst2UI CCWGG 1 cut(s) 286
Bst6I CTCTTC 1 cut(s) 31
BstC8I GCNNGC 1 cut(s) 223
BstDEI CTNAG 1 cut(s) 263
BstF5I GGATG 1 cut(s) 382
BstFNI CGCG 1 cut(s) 321
BstKTI GATC 2 cut(s) 172, 284
BstMAI GTCTC 2 cut(s) 72, 202
BstMBI GATC 2 cut(s) 169, 281
BstMWI GCNNNNNNNGC 1 cut(s) 318
BstNI CCWGG 1 cut(s) 286
BstSCI CCNGG 1 cut(s) 284
BstUI CGCG 1 cut(s) 321
BstX2I RGATCY 1 cut(s) 281
BstYI RGATCY 1 cut(s) 281
BsuRI GGCC 2 cut(s) 83, 245
BtgZI GCGATG 1 cut(s) 302
BtsCI GGATG 1 cut(s) 382
BtsI GCAGTG 1 cut(s) 128
BtsIMutI CAGTG 2 cut(s) 128, 177
BtuMI TCGCGA 1 cut(s) 321
Cac8I GCNNGC 1 cut(s) 223
CaiI CAGNNNCTG 1 cut(s) 109
Csp6I GTAC 1 cut(s) 99
CviAII CATG 1 cut(s) 38
CviJI RGCY 6 cut(s) 77, 83, 106, 123, 245, 312
CviKI_1 RGCY 6 cut(s) 77, 83, 106, 123, 245, 312
CviQI GTAC 1 cut(s) 99
DdeI CTNAG 1 cut(s) 263
DpnI GATC 2 cut(s) 171, 283
DpnII GATC 2 cut(s) 169, 281
EaeI YGGCCR 1 cut(s) 81
Eam1104I CTCTTC 1 cut(s) 31
EarI CTCTTC 1 cut(s) 31
Eco147I AGGCCT 1 cut(s) 245
EcoRII CCWGG 1 cut(s) 284
EcoT22I ATGCAT 1 cut(s) 6
Esp3I CGTCTC 1 cut(s) 202
FaeI CATG 1 cut(s) 41
FaiI YATR 2 cut(s) 6, 39
FatI CATG 1 cut(s) 37
FbaI TGATCA 1 cut(s) 169
FspBI CTAG 1 cut(s) 279
HaeIII GGCC 2 cut(s) 83, 245
Hin1II CATG 1 cut(s) 41
HindIII AAGCTT 1 cut(s) 75
HinfI GANTC 6 cut(s) 10, 23, 48, 209, 250, 271
HphI GGTGA 1 cut(s) 10
Hpy166II GTNNAC 1 cut(s) 101
Hpy188I TCNGA 3 cut(s) 174, 270, 330
Hpy188III TCNNGA 1 cut(s) 320
Hpy8I GTNNAC 1 cut(s) 101
Hpy99I CGWCG 1 cut(s) 94
HpyAV CCTTC 1 cut(s) 223
HpyCH4V TGCA 3 cut(s) 4, 64, 112
HpyF10VI GCNNNNNNNGC 1 cut(s) 318
HpyF3I CTNAG 1 cut(s) 263
Hsp92II CATG 1 cut(s) 41
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 2 cut(s) 169, 281
LpnPI CCDG 9 cut(s) 43, 165, 175, 227, 235, 244, 271, 298, 348
MaeI CTAG 1 cut(s) 279
MaeIII GTNAC 1 cut(s) 126
MalI GATC 2 cut(s) 171, 283
MbiI CCGCTC 1 cut(s) 16
MboI GATC 2 cut(s) 169, 281
MboII GAAGA 2 cut(s) 18, 340
MflI RGATCY 1 cut(s) 281
MhlI GDGCHC 1 cut(s) 259
MluCI AATT 2 cut(s) 203, 226
MlyI GAGTC 2 cut(s) 17, 259
MmeI TCCRAC 1 cut(s) 248
MnlI CCTC 3 cut(s) 37, 286, 323
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 306
MspR9I CCNGG 1 cut(s) 286
MvaI CCWGG 1 cut(s) 286
MvnI CGCG 1 cut(s) 321
MwoI GCNNNNNNNGC 1 cut(s) 318
NdeII GATC 2 cut(s) 169, 281
NlaIII CATG 1 cut(s) 41
NmuCI GTSAC 1 cut(s) 126
NruI TCGCGA 1 cut(s) 321
NsiI ATGCAT 1 cut(s) 6
PceI AGGCCT 1 cut(s) 245
PcsI WCGNNNNNNNCGW 2 cut(s) 86, 122
PfeI GAWTC 4 cut(s) 10, 48, 209, 271
PfoI TCCNGGA 1 cut(s) 284
PleI GAGTC 2 cut(s) 17, 258
PpsI GAGTC 2 cut(s) 17, 258
Psp6I CCWGG 1 cut(s) 284
PspGI CCWGG 1 cut(s) 284
PstNI CAGNNNCTG 1 cut(s) 109
PsuI RGATCY 1 cut(s) 281
RruI TCGCGA 1 cut(s) 321
RsaI GTAC 1 cut(s) 100
RsaNI GTAC 1 cut(s) 99
SaqAI TTAA 1 cut(s) 306
Sau3AI GATC 2 cut(s) 169, 281
SchI GAGTC 2 cut(s) 17, 259
ScrFI CCNGG 1 cut(s) 286
SduI GDGCHC 1 cut(s) 259
SetI ASST 6 cut(s) 62, 79, 108, 280, 297, 337
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 2 cut(s) 203, 226
SseBI AGGCCT 1 cut(s) 245
SsiI CCGC 1 cut(s) 14
SspMI CTAG 1 cut(s) 279
StuI AGGCCT 1 cut(s) 245
StyD4I CCNGG 1 cut(s) 284
TaqI TCGA 1 cut(s) 29
TasI AATT 2 cut(s) 203, 226
TatI WGTACW 1 cut(s) 98
TfiI GAWTC 4 cut(s) 10, 48, 209, 271
Tru1I TTAA 1 cut(s) 306
Tru9I TTAA 1 cut(s) 306
TscAI CASTG 2 cut(s) 135, 184
TseFI GTSAC 1 cut(s) 126
Tsp45I GTSAC 1 cut(s) 126
TspDTI ATGAA 2 cut(s) 26, 225
TspRI CASTG 2 cut(s) 135, 184
XspI CTAG 1 cut(s) 279
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.