Rroxscaffold_175G00432310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000175
OG0019069
Physical Location & Seq
Forward (+)
857073 .. 861481
4409 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_175G00432310.1

Sequence Viewer

Length: 672 bp
ATGCAGCACACCAAGCAATCCAAACAATTCACAATCGGGACCAATCTCATGTACATAGTCAAACCACGAAACCAAAACCCGGTCGCCGACCGCAGTTCAAAACCGTCCCCAAAGCCGTCGCATCTTCCGGAAAAAGAGAAGTCACAACAAATCCCACCACCAATCCAAGGCCCTAAGTTCGATCCTCACGGCTGGGAAACATCAAACAACATCAATCCAAATCTGGATAGATTACCCGACCTCCGCCACGGCCAATTCGGACCAAGATCACAACAAATACAGAAAAAACAAATCTGGATTGTCAAATCCCGATCGGTGAGGATCCGAGAATCAAATCAAATGGCGTCGTACGGGGACGGAGGTTCTATTGGCCAAGCACGGGAAGCAAGTCCATCTCTCCGAGTCCGAGATCAAACAGCTATGTGTTGCTTCTCGGAAAATCTTTCTTCGCAGCCCAATTTGCTCGAGCTTGAAGAAGAGAGAGAGAGTGTGTGGAAATTAGCGAGAGAGAGAGAAAGAGGAAGAAGACGAGCGTGCGTATCGAGTGGATATTTTTCGATCGGGTTTGGGGTGTTGGGAGCTGGTATGAAGAAGGGGGTGGTTGGGAGGGGTGGGGCTCCTGGTTGGAAGGATGTGGATGATGGAGGGATGACCAGCGCTCACGTGGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.83

Weight (kDa)

9.92

Isoelectric Point (pI)

51.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 127
AciI CCGC 2 cut(s) 91, 244
AclWI GGATC 3 cut(s) 176, 316, 329
AcoI YGGCCR 2 cut(s) 250, 370
AcvI CACGTG 1 cut(s) 664
AcyI GRCGYC 1 cut(s) 344
AdeI CACNNNGTG 1 cut(s) 667
AfaI GTAC 2 cut(s) 53, 350
AfeI AGCGCT 1 cut(s) 658
AfiI CCNNNNNNNGG 3 cut(s) 79, 167, 379
AgsI TTSAA 2 cut(s) 99, 473
AjnI CCWGG 1 cut(s) 619
AluBI AGCT 3 cut(s) 419, 469, 581
AluI AGCT 3 cut(s) 419, 469, 581
AlwI GGATC 3 cut(s) 176, 316, 329
Ama87I CYCGRG 1 cut(s) 464
Aor13HI TCCGGA 1 cut(s) 127
Aor51HI AGCGCT 1 cut(s) 658
AoxI GGCC 3 cut(s) 169, 250, 370
ApeKI GCWGC 2 cut(s) 4, 451
AspLEI GCGC 1 cut(s) 659
AspS9I GGNCC 3 cut(s) 39, 170, 260
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 1 cut(s) 328
AvaI CYCGRG 1 cut(s) 464
AvaII GGWCC 2 cut(s) 39, 260
BalI TGGCCA 1 cut(s) 372
BamHI GGATCC 1 cut(s) 321
BanII GRGCYC 1 cut(s) 619
BbrPI CACGTG 1 cut(s) 664
BbsI GAAGAC 1 cut(s) 532
BbvI GCAGC 2 cut(s) 16, 463
BccI CCATC 2 cut(s) 400, 635
BceAI ACGGC 3 cut(s) 100, 205, 265
BciT130I CCWGG 1 cut(s) 621
BcnI CCSGG 1 cut(s) 80
BfoI RGCGCY 1 cut(s) 660
BisI GCNGC 2 cut(s) 5, 452
BlsI GCNGC 2 cut(s) 6, 453
Bme1390I CCNGG 2 cut(s) 80, 621
Bme18I GGWCC 2 cut(s) 39, 260
BmeT110I CYCGRG 1 cut(s) 464
BmgT120I GGNCC 3 cut(s) 39, 170, 260
BmiI GGNNCC 3 cut(s) 40, 323, 618
BmrFI CCNGG 2 cut(s) 80, 621
BmsI GCATC 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 532
BpuMI CCSGG 1 cut(s) 80
BsaAI YACGTR 1 cut(s) 664
BsaHI GRCGYC 1 cut(s) 344
BsaJI CCNNGG 2 cut(s) 166, 247
BsaWI WCCGGW 1 cut(s) 127
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 3 cut(s) 79, 167, 379
BseAI TCCGGA 1 cut(s) 127
BseBI CCWGG 1 cut(s) 621
BseDI CCNNGG 2 cut(s) 166, 247
BseGI GGATG 3 cut(s) 637, 643, 654
BseLI CCNNNNNNNGG 3 cut(s) 79, 167, 379
BseXI GCAGC 2 cut(s) 16, 463
BseYI CCCAGC 1 cut(s) 192
Bsh1285I CGRYCG 4 cut(s) 84, 91, 314, 561
BshFI GGCC 3 cut(s) 171, 252, 372
BsiEI CGRYCG 4 cut(s) 84, 91, 314, 561
BsiHKCI CYCGRG 1 cut(s) 464
BsiSI CCGG 2 cut(s) 80, 128
BsiWI CGTACG 1 cut(s) 348
BslFI GGGAC 3 cut(s) 52, 91, 368
BslI CCNNNNNNNGG 3 cut(s) 79, 167, 379
BsmFI GGGAC 3 cut(s) 52, 91, 368
BsnI GGCC 3 cut(s) 171, 252, 372
BsoBI CYCGRG 1 cut(s) 464
Bsp1286I GDGCHC 1 cut(s) 619
Bsp13I TCCGGA 1 cut(s) 127
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 6 cut(s) 181, 266, 311, 321, 409, 558
BspACI CCGC 2 cut(s) 91, 244
BspANI GGCC 3 cut(s) 171, 252, 372
BspEI TCCGGA 1 cut(s) 127
BspLI GGNNCC 3 cut(s) 40, 323, 618
BspPI GGATC 3 cut(s) 176, 316, 329
BsrGI TGTACA 1 cut(s) 51
BssECI CCNNGG 2 cut(s) 166, 247
BssMI GATC 6 cut(s) 181, 266, 311, 321, 409, 558
BssNI GRCGYC 1 cut(s) 344
BssT1I CCWWGG 1 cut(s) 166
Bst2UI CCWGG 1 cut(s) 621
Bst4CI ACNGT 1 cut(s) 105
Bst6I CTCTTC 1 cut(s) 471
BstACI GRCGYC 1 cut(s) 344
BstAUI TGTACA 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 664
BstC8I GCNNGC 1 cut(s) 535
BstDEI CTNAG 1 cut(s) 174
BstDSI CCRYGG 1 cut(s) 247
BstF5I GGATG 3 cut(s) 637, 643, 654
BstH2I RGCGCY 1 cut(s) 660
BstHHI GCGC 1 cut(s) 659
BstKTI GATC 6 cut(s) 184, 269, 314, 324, 412, 561
BstMBI GATC 6 cut(s) 181, 266, 311, 321, 409, 558
BstMCI CGRYCG 4 cut(s) 84, 91, 314, 561
BstMWI GCNNNNNNNGC 3 cut(s) 13, 383, 460
BstNI CCWGG 1 cut(s) 621
BstSCI CCNGG 2 cut(s) 78, 619
BstV1I GCAGC 2 cut(s) 16, 463
BstV2I GAAGAC 1 cut(s) 532
BstX2I RGATCY 1 cut(s) 321
BstYI RGATCY 1 cut(s) 321
BsuRI GGCC 3 cut(s) 171, 252, 372
BtgI CCRYGG 1 cut(s) 247
BtsCI GGATG 3 cut(s) 637, 643, 654
Cac8I GCNNGC 1 cut(s) 535
CfoI GCGC 1 cut(s) 659
Cfr13I GGNCC 3 cut(s) 39, 170, 260
CseI GACGC 1 cut(s) 333
Csp6I GTAC 2 cut(s) 52, 349
CviAII CATG 1 cut(s) 49
CviQI GTAC 2 cut(s) 52, 349
DdeI CTNAG 1 cut(s) 174
DpnI GATC 6 cut(s) 183, 268, 313, 323, 411, 560
DpnII GATC 6 cut(s) 181, 266, 311, 321, 409, 558
DraIII CACNNNGTG 1 cut(s) 667
EaeI YGGCCR 2 cut(s) 250, 370
Eam1104I CTCTTC 1 cut(s) 471
EarI CTCTTC 1 cut(s) 471
EciI GGCGGA 1 cut(s) 233
Eco130I CCWWGG 1 cut(s) 166
Eco24I GRGCYC 1 cut(s) 619
Eco47I GGWCC 2 cut(s) 39, 260
Eco47III AGCGCT 1 cut(s) 658
Eco72I CACGTG 1 cut(s) 664
Eco88I CYCGRG 1 cut(s) 464
EcoO109I RGGNCCY 1 cut(s) 170
EcoRII CCWGG 1 cut(s) 619
EcoT14I CCWWGG 1 cut(s) 166
EcoT38I GRGCYC 1 cut(s) 619
ErhI CCWWGG 1 cut(s) 166
FaeI CATG 1 cut(s) 52
FaiI YATR 4 cut(s) 50, 56, 422, 587
FaqI GGGAC 3 cut(s) 52, 91, 368
FatI CATG 1 cut(s) 48
Fnu4HI GCNGC 2 cut(s) 5, 452
FokI GGATG 3 cut(s) 644, 650, 661
FriOI GRGCYC 1 cut(s) 619
Fsp4HI GCNGC 2 cut(s) 5, 452
GlaI GCGC 1 cut(s) 658
GluI GCNGC 2 cut(s) 5, 452
GsaI CCCAGC 1 cut(s) 196
HaeII RGCGCY 1 cut(s) 660
HaeIII GGCC 3 cut(s) 171, 252, 372
HapII CCGG 2 cut(s) 80, 128
HgaI GACGC 1 cut(s) 333
HhaI GCGC 1 cut(s) 659
Hin1I GRCGYC 1 cut(s) 344
Hin1II CATG 1 cut(s) 52
Hin6I GCGC 1 cut(s) 657
HinP1I GCGC 1 cut(s) 657
HinfI GANTC 2 cut(s) 329, 402
HpaII CCGG 2 cut(s) 80, 128
HphI GGTGA 1 cut(s) 328
Hpy188I TCNGA 5 cut(s) 260, 326, 401, 407, 436
Hpy188III TCNNGA 5 cut(s) 37, 128, 224, 295, 309
Hpy99I CGWCG 2 cut(s) 121, 349
HpyAV CCTTC 2 cut(s) 586, 622
HpyCH4III ACNGT 1 cut(s) 105
HpyCH4IV ACGT 1 cut(s) 663
HpyCH4V TGCA 1 cut(s) 4
HpyF10VI GCNNNNNNNGC 3 cut(s) 13, 383, 460
HpyF3I CTNAG 1 cut(s) 174
HpySE526I ACGT 1 cut(s) 663
Hsp92I GRCGYC 1 cut(s) 344
Hsp92II CATG 1 cut(s) 52
HspAI GCGC 1 cut(s) 657
Kpn2I TCCGGA 1 cut(s) 127
Kzo9I GATC 6 cut(s) 181, 266, 311, 321, 409, 558
LmnI GCTCC 2 cut(s) 578, 622
LpnPI CCDG 9 cut(s) 93, 141, 178, 209, 280, 567, 606, 633, 667
Lsp1109I GCAGC 2 cut(s) 16, 463
LweI GCATC 1 cut(s) 130
MaeII ACGT 1 cut(s) 663
MaeIII GTNAC 1 cut(s) 141
MalI GATC 6 cut(s) 183, 268, 313, 323, 411, 560
MboI GATC 6 cut(s) 181, 266, 311, 321, 409, 558
MboII GAAGA 7 cut(s) 116, 438, 485, 488, 534, 537, 601
MflI RGATCY 1 cut(s) 321
MhlI GDGCHC 1 cut(s) 619
MlsI TGGCCA 1 cut(s) 372
MluCI AATT 4 cut(s) 26, 254, 457, 497
MluNI TGGCCA 1 cut(s) 372
MlyI GAGTC 1 cut(s) 411
MmeI TCCRAC 1 cut(s) 605
MnlI CCTC 7 cut(s) 195, 251, 312, 353, 512, 600, 638
Mox20I TGGCCA 1 cut(s) 372
MroI TCCGGA 1 cut(s) 127
MscI TGGCCA 1 cut(s) 372
Msp20I TGGCCA 1 cut(s) 372
MspI CCGG 2 cut(s) 80, 128
MspR9I CCNGG 2 cut(s) 80, 621
MvaI CCWGG 1 cut(s) 621
MwoI GCNNNNNNNGC 3 cut(s) 13, 383, 460
NciI CCSGG 1 cut(s) 80
NdeII GATC 6 cut(s) 181, 266, 311, 321, 409, 558
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 3 cut(s) 40, 323, 618
NmuCI GTSAC 1 cut(s) 141
PaeR7I CTCGAG 1 cut(s) 464
PfeI GAWTC 1 cut(s) 329
Pfl23II CGTACG 1 cut(s) 348
PkrI GCNGC 2 cut(s) 6, 453
Ple19I CGATCG 2 cut(s) 314, 561
PleI GAGTC 1 cut(s) 410
PmaCI CACGTG 1 cut(s) 664
PmlI CACGTG 1 cut(s) 664
PpsI GAGTC 1 cut(s) 410
Ppu21I YACGTR 1 cut(s) 664
Psp6I CCWGG 1 cut(s) 619
PspCI CACGTG 1 cut(s) 664
PspFI CCCAGC 1 cut(s) 192
PspGI CCWGG 1 cut(s) 619
PspLI CGTACG 1 cut(s) 348
PspN4I GGNNCC 3 cut(s) 40, 323, 618
PspPI GGNCC 3 cut(s) 39, 170, 260
PspXI VCTCGAGB 1 cut(s) 464
PsuI RGATCY 1 cut(s) 321
PvuI CGATCG 2 cut(s) 314, 561
RsaI GTAC 2 cut(s) 53, 350
RsaNI GTAC 2 cut(s) 52, 349
SatI GCNGC 2 cut(s) 5, 452
Sau3AI GATC 6 cut(s) 181, 266, 311, 321, 409, 558
Sau96I GGNCC 3 cut(s) 39, 170, 260
SchI GAGTC 1 cut(s) 411
ScrFI CCNGG 2 cut(s) 80, 621
SduI GDGCHC 1 cut(s) 619
SetI ASST 6 cut(s) 243, 364, 421, 471, 583, 666
SfaNI GCATC 1 cut(s) 130
Sfr274I CTCGAG 1 cut(s) 464
SinI GGWCC 2 cut(s) 39, 260
SlaI CTCGAG 1 cut(s) 464
SmlI CTYRAG 1 cut(s) 464
SmoI CTYRAG 1 cut(s) 464
Sse9I AATT 4 cut(s) 26, 254, 457, 497
SsiI CCGC 2 cut(s) 91, 244
StyD4I CCNGG 2 cut(s) 78, 619
StyI CCWWGG 1 cut(s) 166
TaaI ACNGT 1 cut(s) 105
TaiI ACGT 1 cut(s) 666
TaqI TCGA 4 cut(s) 180, 465, 542, 557
TasI AATT 4 cut(s) 26, 254, 457, 497
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 1 cut(s) 329
TseFI GTSAC 1 cut(s) 141
TseI GCWGC 2 cut(s) 4, 451
Tsp45I GTSAC 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 602
TspGWI ACGGA 1 cut(s) 372
VpaK11BI GGWCC 2 cut(s) 39, 260
XcmI CCANNNNNNNNNTGG 1 cut(s) 661
XhoI CTCGAG 1 cut(s) 464
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.