Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0019069

Physical Location & Seq

Genomic Coordinates Forward (+)

63641168 .. 63641527

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG428700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGCTATGGGCCTGGGAACCCTTCCGTTGCCATGATCGATTCATCATCATTGCACCTCCAGCAAACTGGACTGCCGCCGTCAGCCACCATACAGGGTCGGTGGCCACTGGCCTTAGAATTGCAAGCACCGTTTGCTTGGCCTTCAAGTCGCTCCACACAATTCCGGCCAGATCTCCTTGCCCAGACCTCCATAGCGATAGTTGCACATCCCCAGCTTTGAGCCGCGCTCGATTTGGTCGGATTCGACCAGAATCACGACTAAAAACCTCTCTGGTCAATGTTCTCCAACTTGAGATTCTGACAGTGGCAAAACTATCCTTCTTCCCAGCAGTTGGTTGGGAGCTCGCCAAAAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

119

Amino Acids

13.19

Weight (kDa)

9.78

Isoelectric Point (pI)

58.29

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019069)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018845 RLG00000029066
rosa_multiflora	Rmu_sc0001643.1_g000027 Rmu_sc0002550.1_g000001 Rmu_ssc0000330.1_g000038
rosa_roxburghii	Rroxscaffold_175G00432310 Rroxscaffold_1G00035620
rosa_samantha	Rh2AG325000 Rh2AG428700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	332
AccII	CGCG	1 cut(s)	225
AciI	CCGC	2 cut(s)	75, 223
AcoI	YGGCCR	2 cut(s)	102, 165
AfiI	CCNNNNNNNGG	1 cut(s)	332
AgsI	TTSAA	1 cut(s)	145
AjnI	CCWGG	1 cut(s)	11
AjuI	GAANNNNNNNTTGG	2 cut(s)	279, 311
AluBI	AGCT	2 cut(s)	215, 343
AluI	AGCT	2 cut(s)	215, 343
Alw21I	GWGCWC	1 cut(s)	345
Alw26I	GTCTC	1 cut(s)	348
AoxI	GGCC	5 cut(s)	9, 102, 109, 138, 165
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	9
BalI	TGGCCA	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	345
Bbv12I	GWGCWC	1 cut(s)	345
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	348
BglII	AGATCT	1 cut(s)	170
BisI	GCNGC	2 cut(s)	75, 223
BlsI	GCNGC	2 cut(s)	76, 224
Bme1390I	CCNGG	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	13
BplI	GAGNNNNNCTC	2 cut(s)	211, 243
BpmI	CTGGAG	1 cut(s)	42
BpuEI	CTTGAG	1 cut(s)	311
Bsa29I	ATCGAT	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	1 cut(s)	332
Bse1I	ACTGG	2 cut(s)	71, 112
Bse3DI	GCAATG	1 cut(s)	48
BseBI	CCWGG	1 cut(s)	13
BseCI	ATCGAT	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	206
BseLI	CCNNNNNNNGG	1 cut(s)	332
BseMI	GCAATG	1 cut(s)	48
BseNI	ACTGG	2 cut(s)	71, 112
BseYI	CCCAGC	2 cut(s)	211, 325
Bsh1236I	CGCG	1 cut(s)	225
BshFI	GGCC	5 cut(s)	11, 104, 111, 140, 167
BshVI	ATCGAT	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	345
BsiSI	CCGG	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	332
BsmAI	GTCTC	1 cut(s)	348
BsnI	GGCC	5 cut(s)	11, 104, 111, 140, 167
Bsp1286I	GDGCHC	1 cut(s)	345
Bsp143I	GATC	2 cut(s)	34, 170
BspACI	CCGC	2 cut(s)	75, 223
BspANI	GGCC	5 cut(s)	11, 104, 111, 140, 167
BspDI	ATCGAT	1 cut(s)	37
BspFNI	CGCG	1 cut(s)	225
BspLI	GGNNCC	1 cut(s)	18
BsrDI	GCAATG	1 cut(s)	48
BsrI	ACTGG	2 cut(s)	71, 112
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	2 cut(s)	34, 170
Bst2UI	CCWGG	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	130, 304
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstC8I	GCNNGC	2 cut(s)	124, 345
BstDEI	CTNAG	1 cut(s)	113
BstF5I	GGATG	1 cut(s)	206
BstFNI	CGCG	1 cut(s)	225
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	2 cut(s)	37, 173
BstMAI	GTCTC	1 cut(s)	348
BstMBI	GATC	2 cut(s)	34, 170
BstMWI	GCNNNNNNNGC	3 cut(s)	59, 132, 201
BstNI	CCWGG	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	11
BstUI	CGCG	1 cut(s)	225
BstX2I	RGATCY	1 cut(s)	170
BstXI	CCANNNNNNTGG	1 cut(s)	66
BstYI	RGATCY	1 cut(s)	170
Bsu15I	ATCGAT	1 cut(s)	37
BsuRI	GGCC	5 cut(s)	11, 104, 111, 140, 167
BsuTUI	ATCGAT	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	206
BtsIMutI	CAGTG	2 cut(s)	105, 309
Cac8I	GCNNGC	2 cut(s)	124, 345
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	9
ClaI	ATCGAT	1 cut(s)	37
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	9 cut(s)	11, 84, 104, 111, 140, 167, 215, 222, 343
CviKI_1	RGCY	9 cut(s)	11, 84, 104, 111, 140, 167, 215, 222, 343
DdeI	CTNAG	1 cut(s)	113
DpnI	GATC	2 cut(s)	36, 172
DpnII	GATC	2 cut(s)	34, 170
EaeI	YGGCCR	2 cut(s)	102, 165
Ecl136II	GAGCTC	1 cut(s)	343
Eco24I	GRGCYC	1 cut(s)	345
Eco53kI	GAGCTC	1 cut(s)	343
EcoICRI	GAGCTC	1 cut(s)	343
EcoRII	CCWGG	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	345
FaeI	CATG	1 cut(s)	35
FaiI	YATR	4 cut(s)	7, 33, 90, 192
FatI	CATG	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	75, 223
FokI	GGATG	1 cut(s)	193
FriOI	GRGCYC	1 cut(s)	345
Fsp4HI	GCNGC	2 cut(s)	75, 223
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	2 cut(s)	75, 223
GsaI	CCCAGC	2 cut(s)	215, 329
GsuI	CTGGAG	1 cut(s)	42
HaeIII	GGCC	5 cut(s)	11, 104, 111, 140, 167
HapII	CCGG	1 cut(s)	164
HhaI	GCGC	1 cut(s)	227
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HinfI	GANTC	4 cut(s)	39, 241, 251, 295
HpaII	CCGG	1 cut(s)	164
Hpy188I	TCNGA	2 cut(s)	240, 300
Hpy188III	TCNNGA	1 cut(s)	255
HpyAV	CCTTC	3 cut(s)	31, 151, 328
HpyCH4III	ACNGT	2 cut(s)	130, 304
HpyCH4V	TGCA	3 cut(s)	53, 122, 204
HpyF10VI	GCNNNNNNNGC	3 cut(s)	59, 132, 201
HpyF3I	CTNAG	1 cut(s)	113
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	1 cut(s)	225
Kzo9I	GATC	2 cut(s)	34, 170
LmnI	GCTCC	2 cut(s)	156, 340
MalI	GATC	2 cut(s)	36, 172
MboI	GATC	2 cut(s)	34, 170
MboII	GAAGA	1 cut(s)	313
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	345
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	2 cut(s)	117, 159
MluNI	TGGCCA	1 cut(s)	104
MmeI	TCCRAC	2 cut(s)	218, 310
MnlI	CCTC	3 cut(s)	66, 197, 277
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
Msp20I	TGGCCA	1 cut(s)	104
MspI	CCGG	1 cut(s)	164
MspR9I	CCNGG	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	13
MvnI	CGCG	1 cut(s)	225
MwoI	GCNNNNNNNGC	3 cut(s)	59, 132, 201
NdeII	GATC	2 cut(s)	34, 170
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	18
PfeI	GAWTC	4 cut(s)	39, 241, 251, 295
PflMI	CCANNNNNTGG	1 cut(s)	332
PkrI	GCNGC	2 cut(s)	76, 224
Psp124BI	GAGCTC	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	11
PspFI	CCCAGC	2 cut(s)	211, 325
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	9
PsuI	RGATCY	1 cut(s)	170
SacI	GAGCTC	1 cut(s)	345
SatI	GCNGC	2 cut(s)	75, 223
Sau3AI	GATC	2 cut(s)	34, 170
Sau96I	GGNCC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	345
SetI	ASST	5 cut(s)	58, 189, 217, 269, 345
SmlI	CTYRAG	1 cut(s)	290
SmoI	CTYRAG	1 cut(s)	290
Sse9I	AATT	2 cut(s)	117, 159
SsiI	CCGC	2 cut(s)	75, 223
SstI	GAGCTC	1 cut(s)	345
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	2 cut(s)	130, 304
TaqI	TCGA	3 cut(s)	37, 229, 244
TasI	AATT	2 cut(s)	117, 159
TauI	GCSGC	2 cut(s)	77, 225
TfiI	GAWTC	4 cut(s)	39, 241, 251, 295
TscAI	CASTG	2 cut(s)	112, 309
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	2 cut(s)	112, 309
Van91I	CCANNNNNTGG	1 cut(s)	332
XcmI	CCANNNNNNNNNTGG	1 cut(s)	333

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.