Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0019069

Physical Location & Seq

Genomic Coordinates Reverse (-)

46727842 .. 46729739

Gene Structure 1898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG325000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCTTTGGGCCTGGGAACCTCTCCGTTGCCATGATCGATTCATTAGCACTGCACCTCTAGCAAACCTAACTGCCGCCGTCAGCCACCATACAGGGTCGATGGCCACTGGCCTTATAATTACAAGCACCGTCTGCTTGGCCTTCAAGTCACTCCACACAATTCCGGCCAGATCTCCTTGCCCAACAGACCTCCATAGTGATGGTTGCACATCACCGGCCTTGAGCCGCGCTCTATTTGGTCGGATTCAACCAGAATCACGACTAAAAACCTCTCTAGTCAATGATCTCCAACGTGAGATCCTGACAGTGGCAAAACCATCCTTCTTACCAGCACTTGGTTGGGAGCTCGTCAAAAGAGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

13.13

Weight (kDa)

8.88

Isoelectric Point (pI)

54.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019069)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000018845 RLG00000029066
rosa_multiflora	Rmu_sc0001643.1_g000027 Rmu_sc0002550.1_g000001 Rmu_ssc0000330.1_g000038
rosa_roxburghii	Rroxscaffold_175G00432310 Rroxscaffold_1G00035620
rosa_samantha	Rh2AG325000 Rh2AG428700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	335
AccII	CGCG	1 cut(s)	228
AciI	CCGC	2 cut(s)	75, 226
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	2 cut(s)	102, 165
AfiI	CCNNNNNNNGG	2 cut(s)	307, 335
AgsI	TTSAA	2 cut(s)	145, 248
AjnI	CCWGG	1 cut(s)	11
AluBI	AGCT	1 cut(s)	346
AluI	AGCT	1 cut(s)	346
Alw21I	GWGCWC	1 cut(s)	348
Alw26I	GTCTC	1 cut(s)	351
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	6 cut(s)	9, 102, 109, 138, 165, 216
AspLEI	GCGC	1 cut(s)	230
AspS9I	GGNCC	1 cut(s)	9
AsuHPI	GGTGA	1 cut(s)	204
BalI	TGGCCA	1 cut(s)	104
BanII	GRGCYC	1 cut(s)	348
Bbv12I	GWGCWC	1 cut(s)	348
BccI	CCATC	3 cut(s)	94, 194, 325
BceAI	ACGGC	1 cut(s)	62
BciT130I	CCWGG	1 cut(s)	13
BcoDI	GTCTC	1 cut(s)	351
BfaI	CTAG	2 cut(s)	59, 275
BglII	AGATCT	1 cut(s)	170
BisI	GCNGC	2 cut(s)	75, 226
BlsI	GCNGC	2 cut(s)	76, 227
Bme1390I	CCNGG	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	9
BmiI	GGNNCC	1 cut(s)	18
BmrFI	CCNGG	1 cut(s)	13
BplI	GAGNNNNNCTC	2 cut(s)	214, 246
BpuEI	CTTGAG	1 cut(s)	241
Bsa29I	ATCGAT	1 cut(s)	37
BsaJI	CCNNGG	1 cut(s)	12
Bsc4I	CCNNNNNNNGG	2 cut(s)	307, 335
Bse118I	RCCGGY	1 cut(s)	214
Bse1I	ACTGG	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	13
BseCI	ATCGAT	1 cut(s)	37
BseDI	CCNNGG	1 cut(s)	12
BseGI	GGATG	1 cut(s)	317
BseLI	CCNNNNNNNGG	2 cut(s)	307, 335
BseNI	ACTGG	1 cut(s)	112
BsgI	GTGCAG	1 cut(s)	36
Bsh1236I	CGCG	1 cut(s)	228
BshFI	GGCC	6 cut(s)	11, 104, 111, 140, 167, 218
BshVI	ATCGAT	1 cut(s)	37
BsiHKAI	GWGCWC	1 cut(s)	348
BsiSI	CCGG	2 cut(s)	164, 215
BslI	CCNNNNNNNGG	2 cut(s)	307, 335
BsmAI	GTCTC	1 cut(s)	351
BsnI	GGCC	6 cut(s)	11, 104, 111, 140, 167, 218
Bsp1286I	GDGCHC	1 cut(s)	348
Bsp143I	GATC	4 cut(s)	34, 170, 283, 297
BspACI	CCGC	2 cut(s)	75, 226
BspANI	GGCC	6 cut(s)	11, 104, 111, 140, 167, 218
BspDI	ATCGAT	1 cut(s)	37
BspFNI	CGCG	1 cut(s)	228
BspLI	GGNNCC	1 cut(s)	18
BspPI	GGATC	1 cut(s)	292
BsrFI	RCCGGY	1 cut(s)	214
BsrI	ACTGG	1 cut(s)	112
BssAI	RCCGGY	1 cut(s)	214
BssECI	CCNNGG	1 cut(s)	12
BssMI	GATC	4 cut(s)	34, 170, 283, 297
Bst2UI	CCWGG	1 cut(s)	13
Bst4CI	ACNGT	2 cut(s)	130, 307
BstAPI	GCANNNNNTGC	1 cut(s)	132
BstF5I	GGATG	1 cut(s)	317
BstFNI	CGCG	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	230
BstKTI	GATC	4 cut(s)	37, 173, 286, 300
BstMAI	GTCTC	1 cut(s)	351
BstMBI	GATC	4 cut(s)	34, 170, 283, 297
BstMWI	GCNNNNNNNGC	2 cut(s)	59, 132
BstNI	CCWGG	1 cut(s)	13
BstSCI	CCNGG	1 cut(s)	11
BstUI	CGCG	1 cut(s)	228
BstX2I	RGATCY	2 cut(s)	170, 297
BstXI	CCANNNNNNTGG	1 cut(s)	200
BstYI	RGATCY	2 cut(s)	170, 297
Bsu15I	ATCGAT	1 cut(s)	37
BsuRI	GGCC	6 cut(s)	11, 104, 111, 140, 167, 218
BsuTUI	ATCGAT	1 cut(s)	37
BtsCI	GGATG	1 cut(s)	317
BtsI	GCAGTG	1 cut(s)	48
BtsIMutI	CAGTG	3 cut(s)	48, 105, 312
CfoI	GCGC	1 cut(s)	230
Cfr10I	RCCGGY	1 cut(s)	214
Cfr13I	GGNCC	1 cut(s)	9
ClaI	ATCGAT	1 cut(s)	37
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	9 cut(s)	11, 84, 104, 111, 140, 167, 218, 225, 346
CviKI_1	RGCY	9 cut(s)	11, 84, 104, 111, 140, 167, 218, 225, 346
DpnI	GATC	4 cut(s)	36, 172, 285, 299
DpnII	GATC	4 cut(s)	34, 170, 283, 297
EaeI	YGGCCR	2 cut(s)	102, 165
Ecl136II	GAGCTC	1 cut(s)	346
Eco24I	GRGCYC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	346
EcoICRI	GAGCTC	1 cut(s)	346
EcoRII	CCWGG	1 cut(s)	11
EcoT38I	GRGCYC	1 cut(s)	348
FaeI	CATG	1 cut(s)	35
FaiI	YATR	4 cut(s)	33, 90, 116, 195
FatI	CATG	1 cut(s)	31
Fnu4HI	GCNGC	2 cut(s)	75, 226
FokI	GGATG	1 cut(s)	304
FriOI	GRGCYC	1 cut(s)	348
Fsp4HI	GCNGC	2 cut(s)	75, 226
FspBI	CTAG	2 cut(s)	59, 275
GlaI	GCGC	1 cut(s)	229
GluI	GCNGC	2 cut(s)	75, 226
HaeIII	GGCC	6 cut(s)	11, 104, 111, 140, 167, 218
HapII	CCGG	2 cut(s)	164, 215
HhaI	GCGC	1 cut(s)	230
Hin1II	CATG	1 cut(s)	35
Hin6I	GCGC	1 cut(s)	228
HinP1I	GCGC	1 cut(s)	228
HinfI	GANTC	3 cut(s)	39, 244, 254
HpaII	CCGG	2 cut(s)	164, 215
HphI	GGTGA	1 cut(s)	204
Hpy188I	TCNGA	1 cut(s)	243
Hpy188III	TCNNGA	2 cut(s)	258, 301
HpyAV	CCTTC	2 cut(s)	151, 331
HpyCH4III	ACNGT	2 cut(s)	130, 307
HpyCH4IV	ACGT	1 cut(s)	292
HpyCH4V	TGCA	2 cut(s)	53, 207
HpyF10VI	GCNNNNNNNGC	2 cut(s)	59, 132
HpySE526I	ACGT	1 cut(s)	292
Hsp92II	CATG	1 cut(s)	35
HspAI	GCGC	1 cut(s)	228
Kzo9I	GATC	4 cut(s)	34, 170, 283, 297
LmnI	GCTCC	1 cut(s)	343
LpnPI	CCDG	9 cut(s)	25, 78, 93, 177, 181, 228, 264, 314, 342
MaeI	CTAG	2 cut(s)	59, 275
MaeII	ACGT	1 cut(s)	292
MaeIII	GTNAC	1 cut(s)	147
MalI	GATC	4 cut(s)	36, 172, 285, 299
MboI	GATC	4 cut(s)	34, 170, 283, 297
MflI	RGATCY	2 cut(s)	170, 297
MhlI	GDGCHC	1 cut(s)	348
MlsI	TGGCCA	1 cut(s)	104
MluCI	AATT	2 cut(s)	117, 159
MluNI	TGGCCA	1 cut(s)	104
MmeI	TCCRAC	2 cut(s)	221, 313
MnlI	CCTC	4 cut(s)	30, 66, 200, 280
Mox20I	TGGCCA	1 cut(s)	104
MscI	TGGCCA	1 cut(s)	104
MslI	CAYNNNNRTG	1 cut(s)	198
Msp20I	TGGCCA	1 cut(s)	104
MspI	CCGG	2 cut(s)	164, 215
MspR9I	CCNGG	1 cut(s)	13
MvaI	CCWGG	1 cut(s)	13
MvnI	CGCG	1 cut(s)	228
MwoI	GCNNNNNNNGC	2 cut(s)	59, 132
NdeII	GATC	4 cut(s)	34, 170, 283, 297
NlaIII	CATG	1 cut(s)	35
NlaIV	GGNNCC	1 cut(s)	18
NmuCI	GTSAC	1 cut(s)	147
PfeI	GAWTC	3 cut(s)	39, 244, 254
PflMI	CCANNNNNTGG	1 cut(s)	335
PkrI	GCNGC	2 cut(s)	76, 227
PsiI	TTATAA	1 cut(s)	116
Psp124BI	GAGCTC	1 cut(s)	348
Psp6I	CCWGG	1 cut(s)	11
PspGI	CCWGG	1 cut(s)	11
PspN4I	GGNNCC	1 cut(s)	18
PspPI	GGNCC	1 cut(s)	9
PsuI	RGATCY	2 cut(s)	170, 297
RseI	CAYNNNNRTG	1 cut(s)	198
SacI	GAGCTC	1 cut(s)	348
SatI	GCNGC	2 cut(s)	75, 226
Sau3AI	GATC	4 cut(s)	34, 170, 283, 297
Sau96I	GGNCC	1 cut(s)	9
ScrFI	CCNGG	1 cut(s)	13
SduI	GDGCHC	1 cut(s)	348
SetI	ASST	7 cut(s)	22, 58, 69, 192, 272, 295, 348
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
Sse9I	AATT	2 cut(s)	117, 159
SsiI	CCGC	2 cut(s)	75, 226
SspMI	CTAG	2 cut(s)	59, 275
SstI	GAGCTC	1 cut(s)	348
StyD4I	CCNGG	1 cut(s)	11
TaaI	ACNGT	2 cut(s)	130, 307
TaiI	ACGT	1 cut(s)	295
TaqI	TCGA	2 cut(s)	37, 98
TasI	AATT	2 cut(s)	117, 159
TauI	GCSGC	2 cut(s)	77, 228
TfiI	GAWTC	3 cut(s)	39, 244, 254
TscAI	CASTG	3 cut(s)	55, 112, 312
TseFI	GTSAC	1 cut(s)	147
Tsp45I	GTSAC	1 cut(s)	147
TspDTI	ATGAA	1 cut(s)	31
TspGWI	ACGGA	1 cut(s)	14
TspRI	CASTG	3 cut(s)	55, 112, 312
Van91I	CCANNNNNTGG	1 cut(s)	335
XcmI	CCANNNNNNNNNTGG	1 cut(s)	336
XspI	CTAG	2 cut(s)	59, 275

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.