Rmu_sc0001670.1_g000029

Uncharacterized protein family, UPF0114

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001670.1
OG0015564
Physical Location & Seq
Reverse (-)
137348 .. 138172
825 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 741 bp
atggcaaccactagaatattgcgcacgtttaagcctatgactattcattcctcctctgcttcttcttcttcaccaccaacaactgttaggtatctgagcaaggatgccgggttgatgcgtggagagaaaaaacttggtactgcgaatgagagtaaacaaatggcggttgttaaggcttcagtggccggttcccagacacctaccacatcgaagccacaagtgaatcgaggagttatagatttggcttccttggttacaaagaccaatcgctctttgctcattctactaagaacggctctcaagagaaaatctatacagcagcaggtccagatgttcattgaaagggtaagtgataaacctctgagcttctgtattaattctacagacatgttcctagtaggaacagccatgcttatattcggagttgggttgtatgccatgttcatggggtcaaaggctgcgaaagatagaggaccgcggttcagtgagtcaaacttgtttgggctgttctacatgaaggcagctccggtatgggttgacatgaaatcagtttcgcaagcaaaatctaaaattgggcatgcagtggtgatgatacttcaagtgggactgttggagaagttcaaaagtatacctcttgtcacaccactcgatcttgcttgctttgccggagctgtgcttgtctcctcagcttgtatcttccttctttccagaattgattattctgctaccactgctggctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
UPF0114

Protein Analysis

246

Amino Acids

26.58

Weight (kDa)

10.19

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UPF0114 PF03350 104 - 207 2.6e-17 Uncharacterized protein family, UPF0114
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0015564)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g40480
malus_domestica MD00G1038700.v1.1 MD08G1038300.v1.1
prunus_persica Prupe.1G385900_v2.0.a1
pyrus_communis pycom15g02980
rosa_chinensis RchiOBHm_Chr6g0300251
rosa_laevigata RLG00000011354
rosa_multiflora Rmu_co8452471.1_g000001 Rmu_sc0001670.1_g000029
rosa_roxburghii Rroxscaffold_7G00167960
rosa_rugosa Rorug06G0294500
rosa_samantha Rh6AG406700 Rh6BG414500 Rh6CG421700 Rh6DG407300
rosa_wichuraiana Rw6G035590

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 23
Acc36I ACCTGC 1 cut(s) 313
AccI GTMKAC 1 cut(s) 628
AccII CGCG 1 cut(s) 478
AciI CCGC 3 cut(s) 164, 476, 478
AcoI YGGCCR 1 cut(s) 183
AcuI CTGAAG 1 cut(s) 162
AfaI GTAC 1 cut(s) 139
AflIII ACRYGT 1 cut(s) 387
AgsI TTSAA 3 cut(s) 341, 599, 622
AluBI AGCT 4 cut(s) 366, 524, 671, 689
AluI AGCT 4 cut(s) 366, 524, 671, 689
Alw26I GTCTC 1 cut(s) 685
AoxI GGCC 1 cut(s) 183
ApeKI GCWGC 3 cut(s) 319, 458, 521
AseI ATTAAT 1 cut(s) 375
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 2 cut(s) 325, 473
AsuC2I CCSGG 1 cut(s) 109
AsuHPI GGTGA 2 cut(s) 63, 598
AvaII GGWCC 2 cut(s) 325, 473
BbvCI CCTCAGC 1 cut(s) 685
BbvI GCAGC 3 cut(s) 331, 445, 533
BceAI ACGGC 1 cut(s) 309
BcnI CCSGG 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 685
BfaI CTAG 2 cut(s) 12, 395
BfmI CTRYAG 1 cut(s) 381
BfuAI ACCTGC 1 cut(s) 313
BisI GCNGC 3 cut(s) 320, 459, 522
BlsI GCNGC 3 cut(s) 321, 460, 523
Bme1390I CCNGG 1 cut(s) 109
Bme18I GGWCC 2 cut(s) 325, 473
BmgT120I GGNCC 2 cut(s) 325, 473
BmiI GGNNCC 1 cut(s) 190
BmrFI CCNGG 1 cut(s) 109
BmsI GCATC 2 cut(s) 94, 105
Bpu10I CCTNAGC 1 cut(s) 685
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 109
BsaJI CCNNGG 2 cut(s) 249, 476
BsaWI WCCGGW 1 cut(s) 526
Bse118I RCCGGY 1 cut(s) 185
BseDI CCNNGG 2 cut(s) 249, 476
BseGI GGATG 1 cut(s) 109
BseMII CTCAG 3 cut(s) 86, 353, 699
BseRI GAGGAG 3 cut(s) 43, 243, 673
BseXI GCAGC 3 cut(s) 331, 445, 533
Bsh1236I CGCG 1 cut(s) 478
BshFI GGCC 1 cut(s) 185
BsiSI CCGG 4 cut(s) 108, 186, 527, 666
BslFI GGGAC 1 cut(s) 618
BsmAI GTCTC 1 cut(s) 685
BsmFI GGGAC 1 cut(s) 618
BsnI GGCC 1 cut(s) 185
Bsp143I GATC 1 cut(s) 649
BspACI CCGC 3 cut(s) 164, 476, 478
BspANI GGCC 1 cut(s) 185
BspCNI CTCAG 3 cut(s) 87, 354, 698
BspFNI CGCG 1 cut(s) 478
BspLI GGNNCC 1 cut(s) 190
BspMI ACCTGC 1 cut(s) 313
BsrFI RCCGGY 1 cut(s) 185
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 249, 476
BssMI GATC 1 cut(s) 649
BssNAI GTATAC 1 cut(s) 629
BssT1I CCWWGG 1 cut(s) 249
Bst1107I GTATAC 1 cut(s) 629
Bst4CI ACNGT 2 cut(s) 85, 609
BstC8I GCNNGC 4 cut(s) 558, 579, 658, 736
BstDEI CTNAG 4 cut(s) 95, 287, 362, 685
BstDSI CCRYGG 1 cut(s) 476
BstF5I GGATG 1 cut(s) 109
BstFNI CGCG 1 cut(s) 478
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 1 cut(s) 652
BstMAI GTCTC 1 cut(s) 685
BstMBI GATC 1 cut(s) 649
BstMWI GCNNNNNNNGC 3 cut(s) 182, 662, 731
BstNSI RCATGY 2 cut(s) 391, 581
BstSCI CCNGG 1 cut(s) 107
BstSFI CTRYAG 1 cut(s) 381
BstUI CGCG 1 cut(s) 478
BstV1I GCAGC 3 cut(s) 331, 445, 533
BstXI CCANNNNNNTGG 1 cut(s) 445
BstZ17I GTATAC 1 cut(s) 629
BsuRI GGCC 1 cut(s) 185
BtgI CCRYGG 1 cut(s) 476
BtsCI GGATG 1 cut(s) 109
BtsI GCAGTG 2 cut(s) 588, 729
BtsIMutI CAGTG 4 cut(s) 186, 490, 588, 729
BveI ACCTGC 1 cut(s) 313
Cac8I GCNNGC 4 cut(s) 558, 579, 658, 736
CfoI GCGC 1 cut(s) 24
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 325, 473
Cfr42I CCGCGG 1 cut(s) 479
Csp6I GTAC 1 cut(s) 138
CviAII CATG 7 cut(s) 388, 409, 439, 445, 514, 541, 578
CviQI GTAC 1 cut(s) 138
DdeI CTNAG 4 cut(s) 95, 287, 362, 685
DpnI GATC 1 cut(s) 651
DpnII GATC 1 cut(s) 649
EaeI YGGCCR 1 cut(s) 183
Eco130I CCWWGG 1 cut(s) 249
Eco47I GGWCC 2 cut(s) 325, 473
Eco57I CTGAAG 1 cut(s) 162
EcoT14I CCWWGG 1 cut(s) 249
ErhI CCWWGG 1 cut(s) 249
FaeI CATG 7 cut(s) 391, 412, 442, 448, 517, 544, 581
FaqI GGGAC 1 cut(s) 618
FatI CATG 7 cut(s) 387, 408, 438, 444, 513, 540, 577
FblI GTMKAC 1 cut(s) 628
Fnu4HI GCNGC 3 cut(s) 320, 459, 522
FokI GGATG 1 cut(s) 116
Fsp4HI GCNGC 3 cut(s) 320, 459, 522
FspBI CTAG 2 cut(s) 12, 395
FspI TGCGCA 1 cut(s) 23
GlaI GCGC 1 cut(s) 23
GluI GCNGC 3 cut(s) 320, 459, 522
HaeIII GGCC 1 cut(s) 185
HapII CCGG 4 cut(s) 108, 186, 527, 666
HhaI GCGC 1 cut(s) 24
Hin1II CATG 7 cut(s) 391, 412, 442, 448, 517, 544, 581
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 1 cut(s) 538
HindII GTYRAC 1 cut(s) 538
HinfI GANTC 2 cut(s) 223, 488
HpaII CCGG 4 cut(s) 108, 186, 527, 666
HphI GGTGA 2 cut(s) 63, 598
Hpy166II GTNNAC 3 cut(s) 155, 538, 629
Hpy188I TCNGA 3 cut(s) 96, 363, 422
Hpy188III TCNNGA 3 cut(s) 301, 328, 708
Hpy8I GTNNAC 3 cut(s) 155, 538, 629
HpyAV CCTTC 2 cut(s) 511, 710
HpyCH4III ACNGT 2 cut(s) 85, 609
HpyCH4IV ACGT 1 cut(s) 26
HpyCH4V TGCA 1 cut(s) 581
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 662, 731
HpyF3I CTNAG 4 cut(s) 95, 287, 362, 685
HpySE526I ACGT 1 cut(s) 26
Hsp92II CATG 7 cut(s) 391, 412, 442, 448, 517, 544, 581
HspAI GCGC 1 cut(s) 22
KspI CCGCGG 1 cut(s) 479
Kzo9I GATC 1 cut(s) 649
LmnI GCTCC 2 cut(s) 529, 668
LpnPI CCDG 9 cut(s) 121, 199, 206, 308, 341, 540, 679, 720, 721
Lsp1109I GCAGC 3 cut(s) 331, 445, 533
LweI GCATC 2 cut(s) 94, 105
MaeI CTAG 2 cut(s) 12, 395
MaeII ACGT 1 cut(s) 26
MaeIII GTNAC 2 cut(s) 253, 637
MalI GATC 1 cut(s) 651
MboI GATC 1 cut(s) 649
MboII GAAGA 4 cut(s) 54, 57, 60, 688
MluCI AATT 3 cut(s) 376, 570, 711
MlyI GAGTC 1 cut(s) 497
MmeI TCCRAC 1 cut(s) 591
MnlI CCTC 7 cut(s) 61, 64, 221, 369, 464, 642, 694
MseI TTAA 3 cut(s) 30, 171, 375
MslI CAYNNNNRTG 1 cut(s) 443
MspA1I CMGCKG 1 cut(s) 478
MspI CCGG 4 cut(s) 108, 186, 527, 666
MspR9I CCNGG 1 cut(s) 109
MvnI CGCG 1 cut(s) 478
MwoI GCNNNNNNNGC 3 cut(s) 182, 662, 731
NciI CCSGG 1 cut(s) 109
NdeII GATC 1 cut(s) 649
NlaIII CATG 7 cut(s) 391, 412, 442, 448, 517, 544, 581
NlaIV GGNNCC 1 cut(s) 190
NmuCI GTSAC 1 cut(s) 637
NsbI TGCGCA 1 cut(s) 23
NspI RCATGY 2 cut(s) 391, 581
PaeI GCATGC 1 cut(s) 581
PciI ACATGT 1 cut(s) 387
PfeI GAWTC 1 cut(s) 223
PkrI GCNGC 3 cut(s) 321, 460, 523
PleI GAGTC 1 cut(s) 496
PpsI GAGTC 1 cut(s) 496
PscI ACATGT 1 cut(s) 387
PshBI ATTAAT 1 cut(s) 375
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 2 cut(s) 325, 473
PsrI GAACNNNNNNTAC 2 cut(s) 425, 457
RsaI GTAC 1 cut(s) 139
RsaNI GTAC 1 cut(s) 138
RseI CAYNNNNRTG 1 cut(s) 443
SacII CCGCGG 1 cut(s) 479
SaqAI TTAA 3 cut(s) 30, 171, 375
SatI GCNGC 3 cut(s) 320, 459, 522
Sau3AI GATC 1 cut(s) 649
Sau96I GGNCC 2 cut(s) 325, 473
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 109
SfaNI GCATC 2 cut(s) 94, 105
SfcI CTRYAG 1 cut(s) 381
Sfr303I CCGCGG 1 cut(s) 479
SgrBI CCGCGG 1 cut(s) 479
SinI GGWCC 2 cut(s) 325, 473
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
SphI GCATGC 1 cut(s) 581
Sse9I AATT 3 cut(s) 376, 570, 711
SsiI CCGC 3 cut(s) 164, 476, 478
SspI AATATT 1 cut(s) 18
SspMI CTAG 2 cut(s) 12, 395
StyD4I CCNGG 1 cut(s) 107
StyI CCWWGG 1 cut(s) 249
TaaI ACNGT 2 cut(s) 85, 609
TaiI ACGT 1 cut(s) 29
TaqI TCGA 3 cut(s) 209, 226, 648
TasI AATT 3 cut(s) 376, 570, 711
TfiI GAWTC 1 cut(s) 223
Tru1I TTAA 3 cut(s) 30, 171, 375
Tru9I TTAA 3 cut(s) 30, 171, 375
TscAI CASTG 4 cut(s) 186, 490, 588, 736
TseFI GTSAC 1 cut(s) 637
TseI GCWGC 3 cut(s) 319, 458, 521
Tsp45I GTSAC 1 cut(s) 637
TspDTI ATGAA 5 cut(s) 35, 325, 433, 530, 557
TspRI CASTG 4 cut(s) 186, 490, 588, 736
VpaK11BI GGWCC 2 cut(s) 325, 473
VspI ATTAAT 1 cut(s) 375
XceI RCATGY 2 cut(s) 391, 581
XmiI GTMKAC 1 cut(s) 628
XspI CTAG 2 cut(s) 12, 395
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.