Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001733.1

Orthogroup ID

OG0008657

Physical Location & Seq

Genomic Coordinates Reverse (-)

57691 .. 59164

Gene Structure 1474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ctggaaattaaggagaggaaagagcggagagggcgttcaactagagcttctgccttgtcaactcctattgaggcaggagatgaagatgtgctggatgatgatggagaggaggaacgagaggcctggtttacttctatctctttggcactctgtaaggcttttgatctattggaaatgctaaagaaagaagaagagatgttgctagcttttaaggaaaggcaatcaaaggagggggataaggaattttatcaagaagttcttgatgatcgtgcccagagggctgaagcttggcatcgtaatgctgcagctcgagtgcagtacagtaaaccagcaccgcctatcacatgtgcaacttttgcacaagatgttctagaagggagagcaaatgtgtcacagatgcatgagcacaaacaccagccactaatctttggaccagcaagtcttattggtggaagcataacaagtgagagggaaaggatggcagctcaggttttccaacctagtcataggttacccactatgagcattgaggacgctgggctgaaggagatggagataatgaacaaatggcaagagaggaatgttaaactcatggaagaagcaaactcttcatggtacaatgacagtgggaaactgccaggaccgccccaggaagatgatgaagatgatgatgctgctcaagacaaggcaagggcatgggatgactggaaagacgataatcctcgaggtgctggcaataagaagctcaccccttgtggataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006808 GO:0006950 GO:0007154 GO:0007165 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0009719 GO:0009725 GO:0009737 GO:0009966 GO:0009967 GO:0009987 GO:0010029 GO:0010033 GO:0010187 GO:0010646 GO:0010647 GO:0010921 GO:0019208 GO:0019220 GO:0019222 GO:0019888 GO:0019899 GO:0019900 GO:0019902 GO:0019903 GO:0023051 GO:0023052 GO:0023056 GO:0030234 GO:0030307 GO:0031323 GO:0031399 GO:0031929 GO:0032006 GO:0032008 GO:0032268 GO:0033993 GO:0035303 GO:0035304 GO:0035556 GO:0040008 GO:0042221 GO:0043666 GO:0044424 GO:0044444 GO:0044464 GO:0045927 GO:0048518 GO:0048519 GO:0048522 GO:0048580 GO:0048581 GO:0048583 GO:0048584 GO:0050789 GO:0050790 GO:0050793 GO:0050794 GO:0050896 GO:0051093 GO:0051128 GO:0051171 GO:0051174 GO:0051239 GO:0051241 GO:0051246 GO:0051336 GO:0051716 GO:0051721 GO:0060255 GO:0065007 GO:0065009 GO:0080090 GO:0097305 GO:0098772 GO:1900140 GO:1901700 GO:1902531 GO:1902533 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko04136 ko04138 ko04140 map04136 map04138 map04140

Pfam Domains

Protein Families

TAP42

Protein Analysis

253

Amino Acids

28.72

Weight (kDa)

4.86

Isoelectric Point (pI)

50.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAP42	PF04177	10 - 241	3.6e-41	TAP42-like family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008657)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G53000
fragaria_vesca	FvH4_7g31380 FvH4_7g31380 FvH4_7g31380
malus_domestica	MD01G1217800.v1.1 MD07G1287100.v1.1 MD07G1287400.v1.1
prunus_persica	Prupe.2G309200_v2.0.a1 Prupe.2G309200_v2.0.a1
pyrus_communis	pycom01g22790 pycom07g26040
rosa_chinensis	RchiOBHm_Chr1g0380451
rosa_laevigata	RLG00000026299
rosa_multiflora	Rmu_sc0001733.1_g000010 Rmu_sc0005371.1_g000013 Rmu_sc0006267.1_g000001
rosa_roxburghii	Rroxscaffold_4G00279350
rosa_rugosa	Rorug01G0421200
rosa_samantha	Rh1AG445700 Rh1BG401000 Rh1CG415400 Rh1DG431100
rosa_wichuraiana	Rw1G038790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	438
AbsI	CCTCGAGG	1 cut(s)	723
AccBSI	CCGCTC	1 cut(s)	25
AciI	CCGC	3 cut(s)	25, 335, 644
AcsI	RAATTY	1 cut(s)	242
AcuI	CTGAAG	2 cut(s)	303, 563
AfaI	GTAC	2 cut(s)	320, 617
AflIII	ACRYGT	1 cut(s)	344
AgsI	TTSAA	1 cut(s)	39
AjnI	CCWGG	3 cut(s)	122, 637, 648
AloI	GAACNNNNNNTCC	2 cut(s)	19, 51
AluBI	AGCT	6 cut(s)	47, 206, 287, 308, 485, 745
AluI	AGCT	6 cut(s)	47, 206, 287, 308, 485, 745
Alw21I	GWGCWC	1 cut(s)	408
Ama87I	CYCGRG	2 cut(s)	309, 723
AoxI	GGCC	1 cut(s)	120
ApeKI	GCWGC	4 cut(s)	302, 305, 482, 674
ApoI	RAATTY	1 cut(s)	242
AspS9I	GGNCC	2 cut(s)	431, 641
AsuHPI	GGTGA	1 cut(s)	739
AsuNHI	GCTAGC	1 cut(s)	202
AvaI	CYCGRG	2 cut(s)	309, 723
AvaII	GGWCC	2 cut(s)	431, 641
BaeGI	GKGCMC	1 cut(s)	274
Bbv12I	GWGCWC	1 cut(s)	408
BbvI	GCAGC	4 cut(s)	289, 317, 494, 661
BccI	CCATC	3 cut(s)	95, 472, 544
BciT130I	CCWGG	3 cut(s)	124, 639, 650
BfaI	CTAG	4 cut(s)	42, 203, 371, 501
BfmI	CTRYAG	1 cut(s)	303
BglI	GCCNNNNNGGC	1 cut(s)	278
BisI	GCNGC	4 cut(s)	303, 306, 483, 675
BlsI	GCNGC	4 cut(s)	304, 307, 484, 676
Bme1390I	CCNGG	3 cut(s)	124, 639, 650
Bme18I	GGWCC	2 cut(s)	431, 641
BmeT110I	CYCGRG	2 cut(s)	309, 723
BmgT120I	GGNCC	2 cut(s)	431, 641
BmrFI	CCNGG	3 cut(s)	124, 639, 650
BmsI	GCATC	3 cut(s)	301, 387, 661
BmtI	GCTAGC	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	486
BpuEI	CTTGAG	1 cut(s)	663
BsaJI	CCNNGG	1 cut(s)	648
BsaXI	ACNNNNNCTCC	2 cut(s)	19, 49
Bse1I	ACTGG	1 cut(s)	710
BseBI	CCWGG	3 cut(s)	124, 639, 650
BseDI	CCNNGG	1 cut(s)	648
BseGI	GGATG	3 cut(s)	100, 483, 706
BseMII	CTCAG	1 cut(s)	500
BseNI	ACTGG	1 cut(s)	710
BseRI	GAGGAG	1 cut(s)	122
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	4 cut(s)	289, 317, 494, 661
BseYI	CCCAGC	1 cut(s)	536
BsgI	GTGCAG	1 cut(s)	335
BshFI	GGCC	1 cut(s)	122
BsiHKAI	GWGCWC	1 cut(s)	408
BsiHKCI	CYCGRG	2 cut(s)	309, 723
BsnI	GGCC	1 cut(s)	122
BsoBI	CYCGRG	2 cut(s)	309, 723
Bsp1286I	GDGCHC	2 cut(s)	274, 408
Bsp143I	GATC	2 cut(s)	163, 265
BspACI	CCGC	3 cut(s)	25, 335, 644
BspANI	GGCC	1 cut(s)	122
BspCNI	CTCAG	1 cut(s)	499
BspMAI	CTGCAG	1 cut(s)	307
BspOI	GCTAGC	1 cut(s)	206
BsrBI	CCGCTC	1 cut(s)	25
BsrI	ACTGG	1 cut(s)	710
BssECI	CCNNGG	1 cut(s)	648
BssMI	GATC	2 cut(s)	163, 265
Bst2UI	CCWGG	3 cut(s)	124, 639, 650
Bst4CI	ACNGT	2 cut(s)	323, 626
Bst6I	CTCTTC	2 cut(s)	186, 613
BstAPI	GCANNNNNTGC	1 cut(s)	356
BstC8I	GCNNGC	2 cut(s)	204, 733
BstDEI	CTNAG	1 cut(s)	486
BstEII	GGTNACC	1 cut(s)	510
BstF5I	GGATG	3 cut(s)	100, 483, 706
BstKTI	GATC	2 cut(s)	166, 268
BstMBI	GATC	2 cut(s)	163, 265
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 278, 356, 643
BstNI	CCWGG	3 cut(s)	124, 639, 650
BstNSI	RCATGY	1 cut(s)	348
BstPI	GGTNACC	1 cut(s)	510
BstSCI	CCNGG	3 cut(s)	122, 637, 648
BstSFI	CTRYAG	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	4 cut(s)	289, 317, 494, 661
BsuRI	GGCC	1 cut(s)	122
BtsCI	GGATG	3 cut(s)	100, 483, 706
BtsIMutI	CAGTG	1 cut(s)	631
Cac8I	GCNNGC	2 cut(s)	204, 733
Cfr13I	GGNCC	2 cut(s)	431, 641
CseI	GACGC	1 cut(s)	542
Csp6I	GTAC	2 cut(s)	319, 616
CspCI	CAANNNNNGTGG	2 cut(s)	607, 642
CviAII	CATG	5 cut(s)	345, 401, 592, 612, 696
CviQI	GTAC	2 cut(s)	319, 616
DdeI	CTNAG	1 cut(s)	486
DpnI	GATC	2 cut(s)	165, 267
DpnII	GATC	2 cut(s)	163, 265
DrdI	GACNNNNNNGTC	1 cut(s)	438
DseDI	GACNNNNNNGTC	1 cut(s)	438
Eam1104I	CTCTTC	2 cut(s)	186, 613
EarI	CTCTTC	2 cut(s)	186, 613
Eco147I	AGGCCT	1 cut(s)	122
Eco47I	GGWCC	2 cut(s)	431, 641
Eco57I	CTGAAG	2 cut(s)	303, 563
Eco88I	CYCGRG	2 cut(s)	309, 723
Eco91I	GGTNACC	1 cut(s)	510
EcoO65I	GGTNACC	1 cut(s)	510
EcoRII	CCWGG	3 cut(s)	122, 637, 648
EcoT22I	ATGCAT	1 cut(s)	402
FaeI	CATG	5 cut(s)	348, 404, 595, 615, 699
FaiI	YATR	8 cut(s)	346, 402, 458, 507, 521, 593, 613, 697
FalI	AAGNNNNNCTT	2 cut(s)	243, 275
FatI	CATG	5 cut(s)	344, 400, 591, 611, 695
Fnu4HI	GCNGC	4 cut(s)	303, 306, 483, 675
FokI	GGATG	3 cut(s)	107, 490, 713
Fsp4HI	GCNGC	4 cut(s)	303, 306, 483, 675
FspBI	CTAG	4 cut(s)	42, 203, 371, 501
GluI	GCNGC	4 cut(s)	303, 306, 483, 675
GsaI	CCCAGC	1 cut(s)	540
HaeIII	GGCC	1 cut(s)	122
HgaI	GACGC	1 cut(s)	542
Hin1II	CATG	5 cut(s)	348, 404, 595, 615, 699
HincII	GTYRAC	1 cut(s)	60
HindII	GTYRAC	1 cut(s)	60
HindIII	AAGCTT	1 cut(s)	285
HphI	GGTGA	1 cut(s)	739
Hpy166II	GTNNAC	3 cut(s)	60, 129, 326
Hpy188III	TCNNGA	4 cut(s)	251, 260, 371, 680
Hpy8I	GTNNAC	3 cut(s)	60, 129, 326
HpyAV	CCTTC	2 cut(s)	368, 538
HpyCH4III	ACNGT	2 cut(s)	323, 626
HpyCH4V	TGCA	5 cut(s)	305, 316, 350, 359, 400
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 278, 356, 643
HpyF3I	CTNAG	1 cut(s)	486
Hsp92II	CATG	5 cut(s)	348, 404, 595, 615, 699
Kzo9I	GATC	2 cut(s)	163, 265
Lsp1109I	GCAGC	4 cut(s)	289, 317, 494, 661
LweI	GCATC	3 cut(s)	301, 387, 661
MaeI	CTAG	4 cut(s)	42, 203, 371, 501
MaeIII	GTNAC	2 cut(s)	390, 510
MalI	GATC	2 cut(s)	165, 267
MbiI	CCGCTC	1 cut(s)	25
MboI	GATC	2 cut(s)	163, 265
MboII	GAAGA	7 cut(s)	95, 200, 203, 600, 608, 665, 674
MhlI	GDGCHC	2 cut(s)	274, 408
MluCI	AATT	2 cut(s)	6, 242
MmeI	TCCRAC	1 cut(s)	520
Mph1103I	ATGCAT	1 cut(s)	402
MseI	TTAA	3 cut(s)	9, 210, 585
MslI	CAYNNNNRTG	1 cut(s)	297
MspR9I	CCNGG	3 cut(s)	124, 639, 650
MvaI	CCWGG	3 cut(s)	124, 639, 650
MwoI	GCNNNNNNNGC	4 cut(s)	31, 278, 356, 643
NdeII	GATC	2 cut(s)	163, 265
NheI	GCTAGC	1 cut(s)	202
NlaIII	CATG	5 cut(s)	348, 404, 595, 615, 699
NmuCI	GTSAC	1 cut(s)	390
NsiI	ATGCAT	1 cut(s)	402
NspI	RCATGY	1 cut(s)	348
PaeR7I	CTCGAG	2 cut(s)	309, 723
PceI	AGGCCT	1 cut(s)	122
PciI	ACATGT	1 cut(s)	344
PkrI	GCNGC	4 cut(s)	304, 307, 484, 676
PscI	ACATGT	1 cut(s)	344
Psp6I	CCWGG	3 cut(s)	122, 637, 648
PspEI	GGTNACC	1 cut(s)	510
PspFI	CCCAGC	1 cut(s)	536
PspGI	CCWGG	3 cut(s)	122, 637, 648
PspPI	GGNCC	2 cut(s)	431, 641
PspXI	VCTCGAGB	2 cut(s)	309, 723
PstI	CTGCAG	1 cut(s)	307
RsaI	GTAC	2 cut(s)	320, 617
RsaNI	GTAC	2 cut(s)	319, 616
RseI	CAYNNNNRTG	1 cut(s)	297
SaqAI	TTAA	3 cut(s)	9, 210, 585
SatI	GCNGC	4 cut(s)	303, 306, 483, 675
Sau3AI	GATC	2 cut(s)	163, 265
Sau96I	GGNCC	2 cut(s)	431, 641
ScrFI	CCNGG	3 cut(s)	124, 639, 650
SduI	GDGCHC	2 cut(s)	274, 408
SfaNI	GCATC	3 cut(s)	301, 387, 661
SfcI	CTRYAG	1 cut(s)	303
Sfr274I	CTCGAG	2 cut(s)	309, 723
SinI	GGWCC	2 cut(s)	431, 641
SlaI	CTCGAG	2 cut(s)	309, 723
SmiMI	CAYNNNNRTG	1 cut(s)	297
SmlI	CTYRAG	3 cut(s)	309, 678, 723
SmoI	CTYRAG	3 cut(s)	309, 678, 723
Sse9I	AATT	2 cut(s)	6, 242
SseBI	AGGCCT	1 cut(s)	122
SsiI	CCGC	3 cut(s)	25, 335, 644
SspMI	CTAG	4 cut(s)	42, 203, 371, 501
StuI	AGGCCT	1 cut(s)	122
StyD4I	CCNGG	3 cut(s)	122, 637, 648
TaaI	ACNGT	2 cut(s)	323, 626
TaqI	TCGA	2 cut(s)	310, 724
TasI	AATT	2 cut(s)	6, 242
TatI	WGTACW	1 cut(s)	318
Tru1I	TTAA	3 cut(s)	9, 210, 585
Tru9I	TTAA	3 cut(s)	9, 210, 585
TscAI	CASTG	1 cut(s)	631
TseFI	GTSAC	1 cut(s)	390
TseI	GCWGC	4 cut(s)	302, 305, 482, 674
Tsp45I	GTSAC	1 cut(s)	390
TspDTI	ATGAA	4 cut(s)	96, 575, 600, 675
TspRI	CASTG	1 cut(s)	631
VpaK11BI	GGWCC	2 cut(s)	431, 641
XapI	RAATTY	1 cut(s)	242
XbaI	TCTAGA	1 cut(s)	370
XceI	RCATGY	1 cut(s)	348
XhoI	CTCGAG	2 cut(s)	309, 723
XspI	CTAG	4 cut(s)	42, 203, 371, 501
Zsp2I	ATGCAT	1 cut(s)	402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.