Rmu_sc0001792.1_g000019

DnaJ molecular chaperone homology domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001792.1
OG0015987
Physical Location & Seq
Forward (+)
68919 .. 70771
1853 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 834 bp
atggattcgccaccgatcataaccaatacccacaagaaacgcagcgttttactcttcttaactcctggttcagagaagcagagcatcacagaagaaatggaacgtttatcaatgtgcggtagtgttgttccatttcgaaaagccgttaaaaccgttaaccaccgccacaacttcaacttcacggtgaagaatagccgcaccggagaggacgctcccctctccggttcttcctccgcttactctattcttggcgtccacccaacttgctcggccgccgagctcaaagccgctttccgagccaaagtgaagcagtttcatcctgatgttaataggaatgcaaaaggttctgataccatgatccgccgtgtcattcaggcctatgagatgctatccaatttcagccgatcggagatcatcgaaggggaatgtttagatccttttgataatccagaatgtgaagcggttgatgtttttgttaatgaggctctttgtgctggaaaaggttgtccatactcatgtgtacaaagagctcctcatgccttcacttatgcttcaactgggactgcaagagcgacttctcaaggacatggagaagattaccaagtgcagcttgcagttggtcagtgcccaagaagttgcattcattatgttacaccttctcagaggattgttttggaggagcttcttgacagcatcttgaacaaaccttatgatagttcagccgaggcagatctgctttactctcttatagttaaagccagctttgagaacaatcgatatcaaaagccaaagaagcaacccaaagcttcaacacaacatgtagattggttttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DnaJ Fer4_15

Protein Analysis

277

Amino Acids

30.77

Weight (kDa)

8.04

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 79 - 133 5.2e-13 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015987)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G05345
fragaria_vesca FvH4_7g03590 FvH4_7g03590
malus_domestica MD12G1219200.v1.1
prunus_persica Prupe.6G325800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0454761
rosa_laevigata RLG00000025417
rosa_multiflora Rmu_sc0001792.1_g000019
rosa_roxburghii Rroxscaffold_6G00424770
rosa_rugosa Rorug03G0002300
rosa_samantha Rh3AG062300 Rh3BG064200 Rh3CG063100 Rh3DG063900
rosa_wichuraiana Rw3G004850

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 117, 163, 196, 234, 273, 288, 361, 461
AclI AACGTT 1 cut(s) 103
AclWI GGATC 2 cut(s) 352, 428
AcoI YGGCCR 1 cut(s) 270
AcyI GRCGYC 1 cut(s) 252
AfaI GTAC 1 cut(s) 522
AfiI CCNNNNNNNGG 1 cut(s) 221
AflIII ACRYGT 1 cut(s) 817
AgsI TTSAA 4 cut(s) 175, 555, 700, 810
AjnI CCWGG 1 cut(s) 64
AluBI AGCT 6 cut(s) 280, 530, 610, 682, 762, 806
AluI AGCT 6 cut(s) 280, 530, 610, 682, 762, 806
Alw21I GWGCWC 2 cut(s) 282, 532
AlwI GGATC 2 cut(s) 352, 428
AoxI GGCC 2 cut(s) 270, 375
ApeKI GCWGC 2 cut(s) 42, 607
AsuHPI GGTGA 1 cut(s) 196
AsuII TTCGAA 1 cut(s) 136
BaeGI GKGCMC 1 cut(s) 629
BanII GRGCYC 2 cut(s) 282, 532
Bbv12I GWGCWC 2 cut(s) 282, 532
BbvI GCAGC 2 cut(s) 54, 619
BceAI ACGGC 2 cut(s) 128, 348
BciT130I CCWGG 1 cut(s) 66
BglII AGATCT 1 cut(s) 730
BisI GCNGC 5 cut(s) 43, 196, 273, 288, 608
BlsI GCNGC 5 cut(s) 44, 197, 274, 289, 609
Bme1390I CCNGG 1 cut(s) 66
BmrFI CCNGG 1 cut(s) 66
BmrI ACTGGG 1 cut(s) 567
BmsI GCATC 3 cut(s) 93, 375, 702
BmuI ACTGGG 1 cut(s) 567
Bpu14I TTCGAA 1 cut(s) 136
BpuEI CTTGAG 1 cut(s) 564
Bsa29I ATCGAT 1 cut(s) 775
BsaHI GRCGYC 1 cut(s) 252
BsaJI CCNNGG 1 cut(s) 723
BsaWI WCCGGW 2 cut(s) 200, 221
Bsc4I CCNNNNNNNGG 1 cut(s) 221
Bse1I ACTGG 1 cut(s) 562
BseBI CCWGG 1 cut(s) 66
BseCI ATCGAT 1 cut(s) 775
BseDI CCNNGG 1 cut(s) 723
BseGI GGATG 1 cut(s) 316
BseLI CCNNNNNNNGG 1 cut(s) 221
BseMII CTCAG 1 cut(s) 674
BseNI ACTGG 1 cut(s) 562
BseRI GAGGAG 2 cut(s) 522, 692
BseSI GKGCMC 1 cut(s) 629
BseX3I CGGCCG 1 cut(s) 270
BseXI GCAGC 2 cut(s) 54, 619
BsgI GTGCAG 1 cut(s) 626
Bsh1285I CGRYCG 2 cut(s) 273, 407
BshFI GGCC 2 cut(s) 272, 377
BshVI ATCGAT 1 cut(s) 775
BsiEI CGRYCG 2 cut(s) 273, 407
BsiHKAI GWGCWC 2 cut(s) 282, 532
BsiSI CCGG 2 cut(s) 201, 222
BslFI GGGAC 1 cut(s) 574
BslI CCNNNNNNNGG 1 cut(s) 221
BsmFI GGGAC 1 cut(s) 574
BsmI GAATGC 2 cut(s) 340, 639
BsnI GGCC 2 cut(s) 272, 377
Bsp119I TTCGAA 1 cut(s) 136
Bsp1286I GDGCHC 3 cut(s) 282, 532, 629
Bsp1407I TGTACA 1 cut(s) 520
Bsp143I GATC 6 cut(s) 15, 357, 404, 411, 433, 730
BspACI CCGC 8 cut(s) 117, 163, 196, 234, 273, 288, 361, 461
BspANI GGCC 2 cut(s) 272, 377
BspCNI CTCAG 1 cut(s) 673
BspDI ATCGAT 1 cut(s) 775
BspPI GGATC 2 cut(s) 352, 428
BspT104I TTCGAA 1 cut(s) 136
BsrGI TGTACA 1 cut(s) 520
BsrI ACTGG 1 cut(s) 562
BssECI CCNNGG 1 cut(s) 723
BssMI GATC 6 cut(s) 15, 357, 404, 411, 433, 730
BssNI GRCGYC 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 66
Bst4CI ACNGT 2 cut(s) 154, 184
Bst6I CTCTTC 1 cut(s) 59
BstACI GRCGYC 1 cut(s) 252
BstAUI TGTACA 1 cut(s) 520
BstBI TTCGAA 1 cut(s) 136
BstC8I GCNNGC 2 cut(s) 612, 760
BstDEI CTNAG 1 cut(s) 660
BstF5I GGATG 1 cut(s) 316
BstKTI GATC 6 cut(s) 18, 360, 407, 414, 436, 733
BstMBI GATC 6 cut(s) 15, 357, 404, 411, 433, 730
BstMCI CGRYCG 2 cut(s) 273, 407
BstMWI GCNNNNNNNGC 4 cut(s) 296, 491, 536, 793
BstNI CCWGG 1 cut(s) 66
BstNSI RCATGY 1 cut(s) 821
BstSCI CCNGG 1 cut(s) 64
BstSLI GKGCMC 1 cut(s) 629
BstV1I GCAGC 2 cut(s) 54, 619
BstX2I RGATCY 2 cut(s) 433, 730
BstYI RGATCY 2 cut(s) 433, 730
BstZI CGGCCG 1 cut(s) 270
Bsu15I ATCGAT 1 cut(s) 775
BsuRI GGCC 2 cut(s) 272, 377
BsuTUI ATCGAT 1 cut(s) 775
BtsCI GGATG 1 cut(s) 316
BtsIMutI CAGTG 1 cut(s) 629
Cac8I GCNNGC 2 cut(s) 612, 760
ClaI ATCGAT 1 cut(s) 775
CseI GACGC 2 cut(s) 218, 241
Csp6I GTAC 1 cut(s) 521
CspCI CAANNNNNGTGG 2 cut(s) 245, 280
CviAII CATG 5 cut(s) 355, 516, 536, 587, 818
CviQI GTAC 1 cut(s) 521
DdeI CTNAG 1 cut(s) 660
DpnI GATC 6 cut(s) 17, 359, 406, 413, 435, 732
DpnII GATC 6 cut(s) 15, 357, 404, 411, 433, 730
EaeI YGGCCR 1 cut(s) 270
EagI CGGCCG 1 cut(s) 270
Eam1104I CTCTTC 1 cut(s) 59
EarI CTCTTC 1 cut(s) 59
EciI GGCGGA 1 cut(s) 350
Ecl136II GAGCTC 2 cut(s) 280, 530
EclXI CGGCCG 1 cut(s) 270
Eco147I AGGCCT 1 cut(s) 377
Eco24I GRGCYC 2 cut(s) 282, 532
Eco32I GATATC 1 cut(s) 779
Eco52I CGGCCG 1 cut(s) 270
Eco53kI GAGCTC 2 cut(s) 280, 530
EcoICRI GAGCTC 2 cut(s) 280, 530
EcoRII CCWGG 1 cut(s) 64
EcoRV GATATC 1 cut(s) 779
EcoT38I GRGCYC 2 cut(s) 282, 532
FaeI CATG 5 cut(s) 358, 519, 539, 590, 821
FalI AAGNNNNNCTT 4 cut(s) 559, 591, 594, 626
FaqI GGGAC 1 cut(s) 574
FatI CATG 5 cut(s) 354, 515, 535, 586, 817
Fnu4HI GCNGC 5 cut(s) 43, 196, 273, 288, 608
FokI GGATG 1 cut(s) 303
FriOI GRGCYC 2 cut(s) 282, 532
Fsp4HI GCNGC 5 cut(s) 43, 196, 273, 288, 608
GluI GCNGC 5 cut(s) 43, 196, 273, 288, 608
HaeIII GGCC 2 cut(s) 272, 377
HapII CCGG 2 cut(s) 201, 222
HgaI GACGC 2 cut(s) 218, 241
Hin1I GRCGYC 1 cut(s) 252
Hin1II CATG 5 cut(s) 358, 519, 539, 590, 821
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HindIII AAGCTT 1 cut(s) 804
HinfI GANTC 1 cut(s) 5
HpaI GTTAAC 1 cut(s) 157
HpaII CCGG 2 cut(s) 201, 222
HphI GGTGA 1 cut(s) 196
Hpy166II GTNNAC 3 cut(s) 157, 256, 521
Hpy188I TCNGA 5 cut(s) 73, 296, 349, 409, 663
Hpy188III TCNNGA 4 cut(s) 320, 449, 686, 697
Hpy8I GTNNAC 3 cut(s) 157, 256, 521
HpyAV CCTTC 3 cut(s) 413, 550, 666
HpyCH4III ACNGT 2 cut(s) 154, 184
HpyCH4IV ACGT 1 cut(s) 103
HpyCH4V TGCA 5 cut(s) 338, 566, 607, 614, 639
HpyF10VI GCNNNNNNNGC 4 cut(s) 296, 491, 536, 793
HpyF3I CTNAG 1 cut(s) 660
HpySE526I ACGT 1 cut(s) 103
Hsp92I GRCGYC 1 cut(s) 252
Hsp92II CATG 5 cut(s) 358, 519, 539, 590, 821
KspAI GTTAAC 1 cut(s) 157
Kzo9I GATC 6 cut(s) 15, 357, 404, 411, 433, 730
LmnI GCTCC 3 cut(s) 217, 535, 679
Lsp1109I GCAGC 2 cut(s) 54, 619
LweI GCATC 3 cut(s) 93, 375, 702
MaeII ACGT 1 cut(s) 103
MaeIII GTNAC 1 cut(s) 649
MalI GATC 6 cut(s) 17, 359, 406, 413, 435, 732
MboI GATC 6 cut(s) 15, 357, 404, 411, 433, 730
MboII GAAGA 5 cut(s) 46, 104, 199, 219, 605
MflI RGATCY 2 cut(s) 433, 730
MhlI GDGCHC 3 cut(s) 282, 532, 629
MluCI AATT 1 cut(s) 394
MnlI CCTC 8 cut(s) 199, 227, 241, 475, 543, 657, 670, 718
MseI TTAA 6 cut(s) 59, 147, 156, 327, 477, 753
MslI CAYNNNNRTG 2 cut(s) 321, 514
MspI CCGG 2 cut(s) 201, 222
MspR9I CCNGG 1 cut(s) 66
Mva1269I GAATGC 2 cut(s) 340, 639
MvaI CCWGG 1 cut(s) 66
MwoI GCNNNNNNNGC 4 cut(s) 296, 491, 536, 793
NdeII GATC 6 cut(s) 15, 357, 404, 411, 433, 730
NlaIII CATG 5 cut(s) 358, 519, 539, 590, 821
NmeAIII GCCGAG 3 cut(s) 248, 301, 748
NspI RCATGY 1 cut(s) 821
NspV TTCGAA 1 cut(s) 136
PceI AGGCCT 1 cut(s) 377
PciI ACATGT 1 cut(s) 817
PctI GAATGC 2 cut(s) 340, 639
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 5 cut(s) 44, 197, 274, 289, 609
Ple19I CGATCG 1 cut(s) 407
PscI ACATGT 1 cut(s) 817
Psp124BI GAGCTC 2 cut(s) 282, 532
Psp1406I AACGTT 1 cut(s) 103
Psp6I CCWGG 1 cut(s) 64
PspGI CCWGG 1 cut(s) 64
PsuI RGATCY 2 cut(s) 433, 730
PvuI CGATCG 1 cut(s) 407
RsaI GTAC 1 cut(s) 522
RsaNI GTAC 1 cut(s) 521
RseI CAYNNNNRTG 2 cut(s) 321, 514
SacI GAGCTC 2 cut(s) 282, 532
SaqAI TTAA 6 cut(s) 59, 147, 156, 327, 477, 753
SatI GCNGC 5 cut(s) 43, 196, 273, 288, 608
Sau3AI GATC 6 cut(s) 15, 357, 404, 411, 433, 730
ScrFI CCNGG 1 cut(s) 66
SduI GDGCHC 3 cut(s) 282, 532, 629
SfaNI GCATC 3 cut(s) 93, 375, 702
SfuI TTCGAA 1 cut(s) 136
SmiMI CAYNNNNRTG 2 cut(s) 321, 514
SmlI CTYRAG 1 cut(s) 579
SmoI CTYRAG 1 cut(s) 579
Sse9I AATT 1 cut(s) 394
SseBI AGGCCT 1 cut(s) 377
SsiI CCGC 8 cut(s) 117, 163, 196, 234, 273, 288, 361, 461
SstI GAGCTC 2 cut(s) 282, 532
StuI AGGCCT 1 cut(s) 377
StyD4I CCNGG 1 cut(s) 64
TaaI ACNGT 2 cut(s) 154, 184
TaiI ACGT 1 cut(s) 106
TaqI TCGA 3 cut(s) 136, 417, 775
TasI AATT 1 cut(s) 394
TatI WGTACW 1 cut(s) 520
TauI GCSGC 3 cut(s) 198, 275, 290
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 6 cut(s) 59, 147, 156, 327, 477, 753
Tru9I TTAA 6 cut(s) 59, 147, 156, 327, 477, 753
TscAI CASTG 1 cut(s) 629
TseI GCWGC 2 cut(s) 42, 607
TspDTI ATGAA 2 cut(s) 305, 632
TspRI CASTG 1 cut(s) 629
XceI RCATGY 1 cut(s) 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.