Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001846.1

Orthogroup ID

OG0007910

Physical Location & Seq

Genomic Coordinates Forward (+)

94904 .. 96553

Gene Structure 1650 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1650 bp

atgagcaagctgcctcattttatccacgcagagctttcttactccaccgagagttatgagttcctagactccccaagtgaagaagttgtgcatccatctagctctagcatttctggaagttcgtttaatgagcaagctgcctcattttatccacgcagagctggatctgtttcctccttgaccactcaaaatccatctagtgcttctttcatgtccatgaggcttcatgatgcttaccaaaccaacattgactcagattacttagagagtcaaagcccggaggctgttagctttgatgacggtaagatgagattgaagcttcaagaattggagagagcactgcttgaggacaacgatgctgaagatgatgaggagatgattggaaatggtcaaagcatggaaattgacggtgaatggactgaaccaatccagaaagcattgctccatgactcaccaaaggagtcttcatcatctgattcttatctaagcagcaccagcaccaacaaagaaatatcacgagtatctcctcgaacacccaagcagctgctgtttgactgtgctggtgcactttcagagggaaatatcgaagaagcatcaaccataataaatgagcttcggcagctggtctcaattcagggagatcctcctcagaggattgcagcatatatggtggaaggccttgtagctcgcatggcttcctcaggaaaatatctctatagagctttgaaatgcaaggaacctccatcctcttatcgccttgcagccatgcaagtactttttgaggtgtgcccttgctttaaatttggattcatggcagcaaatggagccattatagaagctacgaaagatgaaaagagtgtccatataatagattttgacataaaccaggggaatcagtacataacactgatacaagcacttgctgaactgcctggtaagccaccgcacttgaggttaacgggggttgatgaccctgagtcagttcagcgtcctgttgggggccttaataccatcgggcaaaggctagagcagctagcagaaggacttggtgtttcattcgagtttcaagcagttgcctcaaagacttcaatcatcagtcctccgatgctgcactgtaggcaaggggaagcactcgtcataaattttgcttttcagcttcaccacatgcccgatgagagtgtttcgacggtaaaccagagagaccagcttctccggctggccaagagcttgagtccaaaactcgtcacagttgtggaacaagatgtgaacaccaatactaccccattcttcccaagatttgttgaagcctacaattattactctgctgtttttgattcccttgaagcagctataccaagggagagccaggataggatgaatgttgaaaagcagtgccttgcacgggacatagtaaacatcgttgcatgtgaaggagaggaaagaatagagcggtatgaggttgcagggaagtggagagccaggatggccatggctgggtttacttcaactcctatgagtaaaagtgttactgattcgattcgtgaccttatcagaatgtattgtgacaggtacaagataaaggaagaaatgggtggacttcattttggatgggaagacaaaagcttgattgttgcttcagcatggaggtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GRAS

Protein Analysis

549

Amino Acids

61.19

Weight (kDa)

4.95

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GRAS	PF03514	180 - 549	1.9e-138	GRAS domain family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007910)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21450
fragaria_vesca	FvH4_2g15030 FvH4_2g15030 FvH4_2g15030
malus_domestica	MD05G1011200.v1.1 MD10G1011000.v1.1
prunus_persica	Prupe.8G016200_v2.0.a1 Prupe.8G016200_v2.0.a1 Prupe.8G016200_v2.0.a1 Prupe.8G016200_v2.0.a1
pyrus_communis	pycom05g00650
rosa_chinensis	RchiOBHm_Chr6g0277581
rosa_laevigata	RLG00000013290
rosa_multiflora	Rmu_sc0001846.1_g000027
rosa_roxburghii	Rroxscaffold_7G00191190
rosa_rugosa	Rorug06G0109800 Rorug06G0109900 Rorug06G0110000 Rorug06G0110100
rosa_samantha	Rh6AG220300 Rh6BG224200 Rh6CG226500 Rh6DG217100
rosa_wichuraiana	Rw6G019290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1450
AciI	CCGC	2 cut(s)	944, 1450
AclWI	GGATC	2 cut(s)	172, 635
AcoI	YGGCCR	2 cut(s)	1218, 1485
AcsI	RAATTY	2 cut(s)	800, 1141
AcuI	CTGAAG	2 cut(s)	381, 1620
AfaI	GTAC	3 cut(s)	774, 899, 1571
AfiI	CCNNNNNNNGG	3 cut(s)	998, 1402, 1494
AgsI	TTSAA	9 cut(s)	316, 323, 727, 1067, 1089, 1304, 1343, 1385, 1506
AhdI	GACNNNNNGTC	1 cut(s)	976
AjnI	CCWGG	4 cut(s)	885, 931, 1365, 1478
AjuI	GAANNNNNNNTTGG	2 cut(s)	448, 480
AleI	CACNNNNGTG	1 cut(s)	1250
Alw21I	GWGCWC	2 cut(s)	340, 568
Alw26I	GTCTC	2 cut(s)	631, 1194
Alw44I	GTGCAC	1 cut(s)	564
AlwI	GGATC	2 cut(s)	172, 635
AlwNI	CAGNNNCTG	1 cut(s)	547
AoxI	GGCC	4 cut(s)	676, 1000, 1218, 1485
ApaLI	GTGCAC	1 cut(s)	564
ApoI	RAATTY	2 cut(s)	800, 1141
AspS9I	GGNCC	1 cut(s)	1000
AsuC2I	CCSGG	1 cut(s)	278
AsuHPI	GGTGA	3 cut(s)	422, 444, 1151
AsuNHI	GCTAGC	1 cut(s)	1033
AxyI	CCTNAGG	1 cut(s)	700
BaeGI	GKGCMC	2 cut(s)	568, 791
BalI	TGGCCA	2 cut(s)	1220, 1487
BarI	GAAGNNNNNNTAC	2 cut(s)	1335, 1367
BauI	CACGAG	1 cut(s)	516
BbsI	GAAGAC	2 cut(s)	456, 1620
Bbv12I	GWGCWC	2 cut(s)	340, 568
BccI	CCATC	6 cut(s)	103, 202, 751, 1019, 1477, 1602
BciT130I	CCWGG	4 cut(s)	887, 933, 1367, 1480
BcnI	CCSGG	1 cut(s)	278
BcoDI	GTCTC	2 cut(s)	631, 1194
BfaI	CTAG	6 cut(s)	65, 99, 105, 198, 1025, 1034
BfmI	CTRYAG	2 cut(s)	715, 1114
BglI	GCCNNNNNGGC	1 cut(s)	1484
BmcAI	AGTACT	1 cut(s)	774
Bme1390I	CCNGG	5 cut(s)	278, 887, 933, 1367, 1480
BmeRI	GACNNNNNGTC	1 cut(s)	976
BmgT120I	GGNCC	1 cut(s)	1000
BmiI	GGNNCC	3 cut(s)	738, 826, 1001
BmrFI	CCNGG	5 cut(s)	278, 887, 933, 1367, 1480
BmsI	GCATC	5 cut(s)	100, 220, 346, 602, 1095
BmtI	GCTAGC	1 cut(s)	1037
BpiI	GAAGAC	2 cut(s)	456, 1620
BpuEI	CTTGAG	3 cut(s)	365, 970, 1249
BpuMI	CCSGG	1 cut(s)	278
BsaBI	GATNNNNATC	1 cut(s)	480
BsaI	GGTCTC	2 cut(s)	631, 1194
BsaJI	CCNNGG	3 cut(s)	886, 1355, 1488
BsaXI	ACNNNNNCTCC	2 cut(s)	1492, 1522
Bsc4I	CCNNNNNNNGG	3 cut(s)	998, 1402, 1494
Bse21I	CCTNAGG	1 cut(s)	700
Bse3DI	GCAATG	1 cut(s)	437
Bse8I	GATNNNNATC	1 cut(s)	480
BseBI	CCWGG	4 cut(s)	887, 933, 1367, 1480
BseDI	CCNNGG	3 cut(s)	886, 1355, 1488
BseGI	GGATG	5 cut(s)	91, 743, 1380, 1488, 1613
BseJI	GATNNNNATC	1 cut(s)	480
BseLI	CCNNNNNNNGG	3 cut(s)	998, 1402, 1494
BseMI	GCAATG	1 cut(s)	437
BseMII	CTCAG	4 cut(s)	267, 662, 714, 966
BseRI	GAGGAG	3 cut(s)	386, 516, 636
BseSI	GKGCMC	2 cut(s)	568, 791
BseYI	CCCAGC	1 cut(s)	1493
BsgI	GTGCAG	1 cut(s)	1094
BshFI	GGCC	4 cut(s)	678, 1002, 1220, 1487
BsiHKAI	GWGCWC	2 cut(s)	340, 568
BsiSI	CCGG	2 cut(s)	278, 1213
BslFI	GGGAC	1 cut(s)	1418
BslI	CCNNNNNNNGG	3 cut(s)	998, 1402, 1494
BsmAI	GTCTC	2 cut(s)	631, 1194
BsmFI	GGGAC	1 cut(s)	1418
BsnI	GGCC	4 cut(s)	678, 1002, 1220, 1487
Bso31I	GGTCTC	2 cut(s)	631, 1194
Bsp1286I	GDGCHC	3 cut(s)	340, 568, 791
Bsp143I	GATC	2 cut(s)	164, 640
Bsp19I	CCATGG	1 cut(s)	1488
BspACI	CCGC	2 cut(s)	944, 1450
BspANI	GGCC	4 cut(s)	678, 1002, 1220, 1487
BspCNI	CTCAG	4 cut(s)	266, 661, 713, 967
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	3 cut(s)	738, 826, 1001
BspOI	GCTAGC	1 cut(s)	1037
BspPI	GGATC	2 cut(s)	172, 635
BspTNI	GGTCTC	2 cut(s)	631, 1194
BsrBI	CCGCTC	1 cut(s)	1450
BsrDI	GCAATG	1 cut(s)	437
BssECI	CCNNGG	3 cut(s)	886, 1355, 1488
BssMI	GATC	2 cut(s)	164, 640
BssSI	CACGAG	1 cut(s)	516
BssT1I	CCWWGG	2 cut(s)	1355, 1488
Bst2BI	CACGAG	1 cut(s)	516
Bst2UI	CCWGG	4 cut(s)	887, 933, 1367, 1480
Bst4CI	ACNGT	6 cut(s)	302, 410, 557, 1115, 1189, 1249
BstC8I	GCNNGC	5 cut(s)	8, 135, 688, 1035, 1218
BstDEI	CTNAG	6 cut(s)	253, 262, 485, 648, 700, 975
BstDSI	CCRYGG	1 cut(s)	1488
BstF5I	GGATG	5 cut(s)	91, 743, 1380, 1488, 1613
BstKTI	GATC	2 cut(s)	167, 643
BstMAI	GTCTC	2 cut(s)	631, 1194
BstMBI	GATC	2 cut(s)	164, 640
BstMWI	GCNNNNNNNGC	9 cut(s)	495, 619, 692, 824, 937, 1030, 1117, 1213, 1484
BstNI	CCWGG	4 cut(s)	887, 933, 1367, 1480
BstNSI	RCATGY	2 cut(s)	1168, 1428
BstSCI	CCNGG	5 cut(s)	276, 885, 931, 1365, 1478
BstSFI	CTRYAG	2 cut(s)	715, 1114
BstSLI	GKGCMC	2 cut(s)	568, 791
BstV2I	GAAGAC	2 cut(s)	456, 1620
BstX2I	RGATCY	2 cut(s)	164, 640
BstYI	RGATCY	2 cut(s)	164, 640
Bsu36I	CCTNAGG	1 cut(s)	700
BsuRI	GGCC	4 cut(s)	678, 1002, 1220, 1487
BtgI	CCRYGG	1 cut(s)	1488
BtsCI	GGATG	5 cut(s)	91, 743, 1380, 1488, 1613
BtsI	GCAGTG	2 cut(s)	338, 1397
BtsIMutI	CAGTG	4 cut(s)	338, 905, 1111, 1397
Cac8I	GCNNGC	5 cut(s)	8, 135, 688, 1035, 1218
CaiI	CAGNNNCTG	1 cut(s)	547
CciI	TCATGA	1 cut(s)	226
Cfr13I	GGNCC	1 cut(s)	1000
CseI	GACGC	1 cut(s)	977
Csp6I	GTAC	3 cut(s)	773, 898, 1570
CspCI	CAANNNNNGTGG	2 cut(s)	930, 965
CviQI	GTAC	3 cut(s)	773, 898, 1570
DdeI	CTNAG	6 cut(s)	253, 262, 485, 648, 700, 975
DpnI	GATC	2 cut(s)	166, 642
DpnII	GATC	2 cut(s)	164, 640
DraI	TTTAAA	1 cut(s)	799
DriI	GACNNNNNGTC	1 cut(s)	976
EaeI	YGGCCR	2 cut(s)	1218, 1485
Eam1105I	GACNNNNNGTC	1 cut(s)	976
Eco130I	CCWWGG	2 cut(s)	1355, 1488
Eco147I	AGGCCT	1 cut(s)	678
Eco31I	GGTCTC	2 cut(s)	631, 1194
Eco57I	CTGAAG	2 cut(s)	381, 1620
Eco81I	CCTNAGG	1 cut(s)	700
EcoO109I	RGGNCCY	1 cut(s)	1000
EcoRII	CCWGG	4 cut(s)	885, 931, 1365, 1478
EcoT14I	CCWWGG	2 cut(s)	1355, 1488
ErhI	CCWWGG	2 cut(s)	1355, 1488
FaqI	GGGAC	1 cut(s)	1418
FokI	GGATG	5 cut(s)	78, 730, 1387, 1495, 1620
FspBI	CTAG	6 cut(s)	65, 99, 105, 198, 1025, 1034
GsaI	CCCAGC	1 cut(s)	1497
HaeIII	GGCC	4 cut(s)	678, 1002, 1220, 1487
HapII	CCGG	2 cut(s)	278, 1213
HgaI	GACGC	1 cut(s)	977
HincII	GTYRAC	1 cut(s)	957
HindII	GTYRAC	1 cut(s)	957
HindIII	AAGCTT	2 cut(s)	317, 1621
HpaI	GTTAAC	1 cut(s)	957
HpaII	CCGG	2 cut(s)	278, 1213
HphI	GGTGA	3 cut(s)	422, 444, 1151
Hpy166II	GTNNAC	7 cut(s)	566, 957, 1192, 1267, 1414, 1500, 1595
Hpy188I	TCNGA	6 cut(s)	256, 475, 574, 651, 1104, 1553
Hpy188III	TCNNGA	7 cut(s)	114, 227, 323, 430, 516, 702, 1541
Hpy8I	GTNNAC	7 cut(s)	566, 957, 1192, 1267, 1414, 1500, 1595
Hpy99I	CGWCG	1 cut(s)	1189
HpyAV	CCTTC	3 cut(s)	668, 1034, 1424
HpyCH4III	ACNGT	6 cut(s)	302, 410, 557, 1115, 1189, 1249
HpyF10VI	GCNNNNNNNGC	9 cut(s)	495, 619, 692, 824, 937, 1030, 1117, 1213, 1484
HpyF3I	CTNAG	6 cut(s)	253, 262, 485, 648, 700, 975
KspAI	GTTAAC	1 cut(s)	957
Kzo9I	GATC	2 cut(s)	164, 640
LmnI	GCTCC	2 cut(s)	447, 824
LweI	GCATC	5 cut(s)	100, 220, 346, 602, 1095
MaeI	CTAG	6 cut(s)	65, 99, 105, 198, 1025, 1034
MaeIII	GTNAC	4 cut(s)	1243, 1525, 1541, 1562
MalI	GATC	2 cut(s)	166, 642
MbiI	CCGCTC	1 cut(s)	1450
MboI	GATC	2 cut(s)	164, 640
MboII	GAAGA	7 cut(s)	92, 374, 456, 599, 1279, 1595, 1625
MflI	RGATCY	2 cut(s)	164, 640
MhlI	GDGCHC	3 cut(s)	340, 568, 791
MlsI	TGGCCA	2 cut(s)	1220, 1487
MluCI	AATT	6 cut(s)	326, 402, 630, 800, 1141, 1312
MluNI	TGGCCA	2 cut(s)	1220, 1487
MlyI	GAGTC	7 cut(s)	62, 245, 277, 443, 470, 986, 1240
Mox20I	TGGCCA	2 cut(s)	1220, 1487
MscI	TGGCCA	2 cut(s)	1220, 1487
MseI	TTAA	4 cut(s)	126, 798, 956, 1005
MslI	CAYNNNNRTG	3 cut(s)	215, 1250, 1645
Msp20I	TGGCCA	2 cut(s)	1220, 1487
MspA1I	CMGCKG	2 cut(s)	544, 622
MspI	CCGG	2 cut(s)	278, 1213
MspR9I	CCNGG	5 cut(s)	278, 887, 933, 1367, 1480
MvaI	CCWGG	4 cut(s)	887, 933, 1367, 1480
MwoI	GCNNNNNNNGC	9 cut(s)	495, 619, 692, 824, 937, 1030, 1117, 1213, 1484
NciI	CCSGG	1 cut(s)	278
NcoI	CCATGG	1 cut(s)	1488
NdeII	GATC	2 cut(s)	164, 640
NheI	GCTAGC	1 cut(s)	1033
NlaIV	GGNNCC	3 cut(s)	738, 826, 1001
NmuCI	GTSAC	3 cut(s)	1243, 1541, 1562
NspI	RCATGY	2 cut(s)	1168, 1428
OliI	CACNNNNGTG	1 cut(s)	1250
PagI	TCATGA	1 cut(s)	226
PceI	AGGCCT	1 cut(s)	678
PfeI	GAWTC	6 cut(s)	476, 807, 892, 1334, 1532, 1537
PleI	GAGTC	7 cut(s)	62, 245, 276, 443, 469, 985, 1239
PpsI	GAGTC	7 cut(s)	62, 245, 276, 443, 469, 985, 1239
Psp6I	CCWGG	4 cut(s)	885, 931, 1365, 1478
PspFI	CCCAGC	1 cut(s)	1493
PspGI	CCWGG	4 cut(s)	885, 931, 1365, 1478
PspN4I	GGNNCC	3 cut(s)	738, 826, 1001
PspPI	GGNCC	1 cut(s)	1000
PstNI	CAGNNNCTG	1 cut(s)	547
PsuI	RGATCY	2 cut(s)	164, 640
PvuII	CAGCTG	2 cut(s)	544, 622
RsaI	GTAC	3 cut(s)	774, 899, 1571
RsaNI	GTAC	3 cut(s)	773, 898, 1570
RseI	CAYNNNNRTG	3 cut(s)	215, 1250, 1645
SaqAI	TTAA	4 cut(s)	126, 798, 956, 1005
Sau3AI	GATC	2 cut(s)	164, 640
Sau96I	GGNCC	1 cut(s)	1000
ScaI	AGTACT	1 cut(s)	774
SchI	GAGTC	7 cut(s)	62, 245, 277, 443, 470, 986, 1240
ScrFI	CCNGG	5 cut(s)	278, 887, 933, 1367, 1480
SduI	GDGCHC	3 cut(s)	340, 568, 791
SfaNI	GCATC	5 cut(s)	100, 220, 346, 602, 1095
SfcI	CTRYAG	2 cut(s)	715, 1114
SmiMI	CAYNNNNRTG	3 cut(s)	215, 1250, 1645
SmlI	CTYRAG	3 cut(s)	344, 949, 1228
SmoI	CTYRAG	3 cut(s)	344, 949, 1228
Sse9I	AATT	6 cut(s)	326, 402, 630, 800, 1141, 1312
SseBI	AGGCCT	1 cut(s)	678
SsiI	CCGC	2 cut(s)	944, 1450
SspMI	CTAG	6 cut(s)	65, 99, 105, 198, 1025, 1034
StuI	AGGCCT	1 cut(s)	678
StyD4I	CCNGG	5 cut(s)	276, 885, 931, 1365, 1478
StyI	CCWWGG	2 cut(s)	1355, 1488
TaaI	ACNGT	6 cut(s)	302, 410, 557, 1115, 1189, 1249
TaqI	TCGA	5 cut(s)	529, 585, 1059, 1184, 1535
TasI	AATT	6 cut(s)	326, 402, 630, 800, 1141, 1312
TatI	WGTACW	2 cut(s)	772, 897
TfiI	GAWTC	6 cut(s)	476, 807, 892, 1334, 1532, 1537
Tru1I	TTAA	4 cut(s)	126, 798, 956, 1005
Tru9I	TTAA	4 cut(s)	126, 798, 956, 1005
TscAI	CASTG	4 cut(s)	345, 912, 1118, 1397
TseFI	GTSAC	3 cut(s)	1243, 1541, 1562
Tsp45I	GTSAC	3 cut(s)	1243, 1541, 1562
TspDTI	ATGAA	8 cut(s)	199, 215, 456, 799, 864, 1044, 1391, 1589
TspRI	CASTG	4 cut(s)	345, 912, 1118, 1397
VneI	GTGCAC	1 cut(s)	564
XapI	RAATTY	2 cut(s)	800, 1141
XceI	RCATGY	2 cut(s)	1168, 1428
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1486
XspI	CTAG	6 cut(s)	65, 99, 105, 198, 1025, 1034
ZrmI	AGTACT	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.