Rmu_sc0002025.1_g000003

Lysine methyltransferase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002025.1
OG0009234
Physical Location & Seq
Reverse (-)
11914 .. 14654
2741 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 915 bp
atggaaaccggagccccagccacggccaaaccctcgtctctccgatggaaaattctccgtcaagcccttcttcgcaaaccaaccgatgagcaatctgcaattggggttaagcgaatcacgaggaagacgactcaaggcttcaacttgataccctctaatctcgttgaagaccacccaactaacttaaccgacgcaactgtctgctacaccatccccattgactctgctcccaagctttacctaactcaacgagtggttgaccgtgctgagctcagtgactttgagatttgcaatcagtacaatattgacaataccgggcttgtttgtcagtggccatcagaagaggctcttgcgtatttttgcttgcggaatgcagacatgttcaggtctaagagtgtgattgagcttggggcaggatatggattagctggtctagttattgcagcagttacagaggcatcggaagttgtgatttctgacggaaatccccaagtagttgattatattcagagcaatattgatgccaactcaaaagcatttggtggtacaagagtgaagtctatgatgttgcattggaatcagaatgaaaaatcaaatatctctagcaattttgatctcattgttgcgagtgactgcaccttttttaaggaattccacaatggacttgctcaaattgtcaaattcttgttggaaaaagtgcggcccgctgaagctatattcttcagtcctaaaagaggagactccttagacaagttcctagagaaaatcaaagaaagtaatttgtgcttcagcataacagaaaattatgatacagaaatttggaagcgccataaccagcttataaatggtgatggttcctggcccagctacgaaaaagatcactgctatcccttattggtcaggattgcactataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00310 map00310
Pfam Domains
Protein Families
Methyltransf_16

Protein Analysis

304

Amino Acids

34.14

Weight (kDa)

5.81

Isoelectric Point (pI)

39.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_16 PF10294 111 - 258 3.9e-22 Lysine methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 842
AasI GACNNNNNNGTC 1 cut(s) 197
AciI CCGC 3 cut(s) 367, 700, 705
AcoI YGGCCR 2 cut(s) 24, 332
AcsI RAATTY 4 cut(s) 51, 650, 680, 816
AcuI CTGAAG 3 cut(s) 706, 729, 772
AfaI GTAC 2 cut(s) 299, 547
AfiI CCNNNNNNNGG 2 cut(s) 22, 734
AflIII ACRYGT 1 cut(s) 378
AgsI TTSAA 2 cut(s) 142, 167
AjnI CCWGG 1 cut(s) 857
AluBI AGCT 7 cut(s) 235, 271, 406, 428, 713, 838, 867
AluI AGCT 7 cut(s) 235, 271, 406, 428, 713, 838, 867
Alw21I GWGCWC 1 cut(s) 273
Alw26I GTCTC 2 cut(s) 42, 732
AoxI GGCC 4 cut(s) 24, 332, 701, 860
ApeKI GCWGC 1 cut(s) 443
ApoI RAATTY 4 cut(s) 51, 650, 680, 816
AspLEI GCGC 1 cut(s) 828
AspS9I GGNCC 2 cut(s) 702, 861
AsuC2I CCSGG 1 cut(s) 316
AsuHPI GGTGA 1 cut(s) 860
BaeI ACNNNNGTAYC 2 cut(s) 537, 570
BalI TGGCCA 1 cut(s) 334
BanII GRGCYC 2 cut(s) 16, 273
BauI CACGAG 1 cut(s) 118
BbsI GAAGAC 2 cut(s) 131, 174
Bbv12I GWGCWC 1 cut(s) 273
BbvI GCAGC 1 cut(s) 455
BccI CCATC 4 cut(s) 39, 218, 343, 845
BceAI ACGGC 1 cut(s) 39
BciT130I CCWGG 1 cut(s) 859
BcnI CCSGG 1 cut(s) 316
BcoDI GTCTC 2 cut(s) 42, 732
BfaI CTAG 3 cut(s) 434, 603, 758
BfoI RGCGCY 1 cut(s) 829
BisI GCNGC 2 cut(s) 444, 701
BlpI GCTNAGC 1 cut(s) 267
BlsI GCNGC 2 cut(s) 445, 702
Bme1390I CCNGG 2 cut(s) 316, 859
BmgT120I GGNCC 2 cut(s) 702, 861
BmiI GGNNCC 2 cut(s) 13, 856
BmrFI CCNGG 2 cut(s) 316, 859
BmsI GCATC 2 cut(s) 467, 511
BpiI GAAGAC 2 cut(s) 131, 174
Bpu1102I GCTNAGC 1 cut(s) 267
BpuEI CTTGAG 1 cut(s) 117
BpuMI CCSGG 1 cut(s) 316
BsaJI CCNNGG 1 cut(s) 21
BsaWI WCCGGW 1 cut(s) 8
Bsc4I CCNNNNNNNGG 2 cut(s) 22, 734
BseBI CCWGG 1 cut(s) 859
BseDI CCNNGG 1 cut(s) 21
BseGI GGATG 1 cut(s) 210
BseLI CCNNNNNNNGG 2 cut(s) 22, 734
BseMII CTCAG 2 cut(s) 258, 286
BseRI GAGGAG 1 cut(s) 750
BseXI GCAGC 1 cut(s) 455
BseYI CCCAGC 2 cut(s) 16, 863
BsgI GTGCAG 1 cut(s) 619
BshFI GGCC 4 cut(s) 26, 334, 703, 862
BsiHKAI GWGCWC 1 cut(s) 273
BsiSI CCGG 2 cut(s) 9, 315
BslI CCNNNNNNNGG 2 cut(s) 22, 734
BsmAI GTCTC 2 cut(s) 42, 732
BsmBI CGTCTC 1 cut(s) 42
BsmI GAATGC 1 cut(s) 376
BsnI GGCC 4 cut(s) 26, 334, 703, 862
Bsp1286I GDGCHC 2 cut(s) 16, 273
Bsp143I GATC 2 cut(s) 613, 877
Bsp1720I GCTNAGC 1 cut(s) 267
BspACI CCGC 3 cut(s) 367, 700, 705
BspANI GGCC 4 cut(s) 26, 334, 703, 862
BspCNI CTCAG 2 cut(s) 259, 285
BspLI GGNNCC 2 cut(s) 13, 856
BssECI CCNNGG 1 cut(s) 21
BssMI GATC 2 cut(s) 613, 877
BssSI CACGAG 1 cut(s) 118
Bst2BI CACGAG 1 cut(s) 118
Bst2UI CCWGG 1 cut(s) 859
Bst4CI ACNGT 2 cut(s) 199, 263
Bst6I CTCTTC 1 cut(s) 336
BstC8I GCNNGC 2 cut(s) 365, 705
BstDEI CTNAG 4 cut(s) 267, 272, 390, 745
BstDSI CCRYGG 1 cut(s) 21
BstENI CCTNNNNNAGG 1 cut(s) 732
BstF5I GGATG 1 cut(s) 210
BstH2I RGCGCY 1 cut(s) 829
BstHHI GCGC 1 cut(s) 828
BstKTI GATC 2 cut(s) 616, 880
BstMAI GTCTC 2 cut(s) 42, 732
BstMBI GATC 2 cut(s) 613, 877
BstNI CCWGG 1 cut(s) 859
BstNSI RCATGY 1 cut(s) 382
BstSCI CCNGG 2 cut(s) 314, 857
BstV1I GCAGC 1 cut(s) 455
BstV2I GAAGAC 2 cut(s) 131, 174
BsuRI GGCC 4 cut(s) 26, 334, 703, 862
BtgI CCRYGG 1 cut(s) 21
BtsCI GGATG 1 cut(s) 210
BtsI GCAGTG 1 cut(s) 880
BtsIMutI CAGTG 3 cut(s) 280, 335, 880
Cac8I GCNNGC 2 cut(s) 365, 705
CfoI GCGC 1 cut(s) 828
Cfr13I GGNCC 2 cut(s) 702, 861
CseI GACGC 1 cut(s) 200
Csp6I GTAC 2 cut(s) 298, 546
CviAII CATG 1 cut(s) 379
CviQI GTAC 2 cut(s) 298, 546
DdeI CTNAG 4 cut(s) 267, 272, 390, 745
DpnI GATC 2 cut(s) 615, 879
DpnII GATC 2 cut(s) 613, 877
DrdI GACNNNNNNGTC 1 cut(s) 197
DseDI GACNNNNNNGTC 1 cut(s) 197
EaeI YGGCCR 2 cut(s) 24, 332
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Ecl136II GAGCTC 1 cut(s) 271
Eco24I GRGCYC 2 cut(s) 16, 273
Eco53kI GAGCTC 1 cut(s) 271
Eco57I CTGAAG 3 cut(s) 706, 729, 772
EcoICRI GAGCTC 1 cut(s) 271
EcoNI CCTNNNNNAGG 1 cut(s) 732
EcoRI GAATTC 1 cut(s) 650
EcoRII CCWGG 1 cut(s) 857
EcoT38I GRGCYC 2 cut(s) 16, 273
Esp3I CGTCTC 1 cut(s) 42
FaeI CATG 1 cut(s) 382
FalI AAGNNNNNCTT 4 cut(s) 54, 86, 333, 365
FatI CATG 1 cut(s) 378
FauI CCCGC 1 cut(s) 712
Fnu4HI GCNGC 2 cut(s) 444, 701
FokI GGATG 1 cut(s) 197
FriOI GRGCYC 2 cut(s) 16, 273
Fsp4HI GCNGC 2 cut(s) 444, 701
FspBI CTAG 3 cut(s) 434, 603, 758
GlaI GCGC 1 cut(s) 827
GluI GCNGC 2 cut(s) 444, 701
GsaI CCCAGC 2 cut(s) 20, 867
HaeII RGCGCY 1 cut(s) 829
HaeIII GGCC 4 cut(s) 26, 334, 703, 862
HapII CCGG 2 cut(s) 9, 315
HgaI GACGC 1 cut(s) 200
HhaI GCGC 1 cut(s) 828
Hin1II CATG 1 cut(s) 382
Hin6I GCGC 1 cut(s) 826
HinP1I GCGC 1 cut(s) 826
HincII GTYRAC 1 cut(s) 259
HindII GTYRAC 1 cut(s) 259
HindIII AAGCTT 1 cut(s) 233
HinfI GANTC 5 cut(s) 114, 130, 221, 577, 740
HpaII CCGG 2 cut(s) 9, 315
HphI GGTGA 1 cut(s) 860
Hpy166II GTNNAC 1 cut(s) 259
Hpy188I TCNGA 6 cut(s) 44, 340, 463, 478, 510, 582
Hpy188III TCNNGA 2 cut(s) 118, 901
Hpy8I GTNNAC 1 cut(s) 259
Hpy99I CGWCG 1 cut(s) 194
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 2 cut(s) 199, 263
HpyCH4V TGCA 7 cut(s) 98, 291, 374, 443, 571, 636, 908
HpyF3I CTNAG 4 cut(s) 267, 272, 390, 745
Hsp92II CATG 1 cut(s) 382
HspAI GCGC 1 cut(s) 826
Kzo9I GATC 2 cut(s) 613, 877
LmnI GCTCC 2 cut(s) 11, 232
Lsp1109I GCAGC 1 cut(s) 455
LweI GCATC 2 cut(s) 467, 511
MaeI CTAG 3 cut(s) 434, 603, 758
MaeIII GTNAC 3 cut(s) 275, 448, 629
MalI GATC 2 cut(s) 615, 879
MboI GATC 2 cut(s) 613, 877
MboII GAAGA 5 cut(s) 62, 136, 179, 353, 712
MfeI CAATTG 1 cut(s) 99
MhlI GDGCHC 2 cut(s) 16, 273
MlsI TGGCCA 1 cut(s) 334
MluCI AATT 9 cut(s) 51, 99, 607, 650, 672, 680, 778, 802, 816
MluNI TGGCCA 1 cut(s) 334
MlyI GAGTC 3 cut(s) 124, 215, 734
MmeI TCCRAC 1 cut(s) 669
MnlI CCTC 6 cut(s) 43, 114, 163, 337, 448, 728
Mox20I TGGCCA 1 cut(s) 334
MscI TGGCCA 1 cut(s) 334
MseI TTAA 3 cut(s) 108, 185, 645
Msp20I TGGCCA 1 cut(s) 334
MspA1I CMGCKG 1 cut(s) 707
MspI CCGG 2 cut(s) 9, 315
MspR9I CCNGG 2 cut(s) 316, 859
MunI CAATTG 1 cut(s) 99
Mva1269I GAATGC 1 cut(s) 376
MvaI CCWGG 1 cut(s) 859
NciI CCSGG 1 cut(s) 316
NdeII GATC 2 cut(s) 613, 877
NlaIII CATG 1 cut(s) 382
NlaIV GGNNCC 2 cut(s) 13, 856
NmuCI GTSAC 2 cut(s) 275, 629
NspI RCATGY 1 cut(s) 382
PciI ACATGT 1 cut(s) 378
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PctI GAATGC 1 cut(s) 376
PfeI GAWTC 2 cut(s) 114, 577
PkrI GCNGC 2 cut(s) 445, 702
PleI GAGTC 3 cut(s) 124, 215, 734
PpsI GAGTC 3 cut(s) 124, 215, 734
PscI ACATGT 1 cut(s) 378
PsiI TTATAA 1 cut(s) 842
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 857
PspFI CCCAGC 2 cut(s) 16, 863
PspGI CCWGG 1 cut(s) 857
PspN4I GGNNCC 2 cut(s) 13, 856
PspPI GGNCC 2 cut(s) 702, 861
RsaI GTAC 2 cut(s) 299, 547
RsaNI GTAC 2 cut(s) 298, 546
SacI GAGCTC 1 cut(s) 273
SaqAI TTAA 3 cut(s) 108, 185, 645
SatI GCNGC 2 cut(s) 444, 701
Sau3AI GATC 2 cut(s) 613, 877
Sau96I GGNCC 2 cut(s) 702, 861
SchI GAGTC 3 cut(s) 124, 215, 734
ScrFI CCNGG 2 cut(s) 316, 859
SduI GDGCHC 2 cut(s) 16, 273
SfaNI GCATC 2 cut(s) 467, 511
SmlI CTYRAG 1 cut(s) 132
SmoI CTYRAG 1 cut(s) 132
Sse9I AATT 9 cut(s) 51, 99, 607, 650, 672, 680, 778, 802, 816
SsiI CCGC 3 cut(s) 367, 700, 705
SspI AATATT 2 cut(s) 304, 517
SspMI CTAG 3 cut(s) 434, 603, 758
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 2 cut(s) 314, 857
TaaI ACNGT 2 cut(s) 199, 263
TasI AATT 9 cut(s) 51, 99, 607, 650, 672, 680, 778, 802, 816
TatI WGTACW 1 cut(s) 297
TauI GCSGC 1 cut(s) 703
TfiI GAWTC 2 cut(s) 114, 577
Tru1I TTAA 3 cut(s) 108, 185, 645
Tru9I TTAA 3 cut(s) 108, 185, 645
TscAI CASTG 3 cut(s) 280, 335, 887
TseFI GTSAC 2 cut(s) 275, 629
TseI GCWGC 1 cut(s) 443
Tsp45I GTSAC 2 cut(s) 275, 629
TspDTI ATGAA 1 cut(s) 600
TspGWI ACGGA 2 cut(s) 47, 495
TspRI CASTG 3 cut(s) 280, 335, 887
XagI CCTNNNNNAGG 1 cut(s) 732
XapI RAATTY 4 cut(s) 51, 650, 680, 816
XceI RCATGY 1 cut(s) 382
XcmI CCANNNNNNNNNTGG 1 cut(s) 842
XspI CTAG 3 cut(s) 434, 603, 758
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.