Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002035.1

Orthogroup ID

OG0009270

Physical Location & Seq

Genomic Coordinates Forward (+)

20524 .. 23820

Gene Structure 3297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

atgcggccgaagctcgctgacgtcaccaacttgccggctcctccgagaattgaaaagccgcccgaagtttccgtgggtgataaggaccgtgttgaacagctcatgagggaaagaatggctttgatcaaactcgtcagcgaaaggaataaaatcattgaattgagtggagctgagttgcagaaactgcgagttagtgttcagaaattgcagctacaaaattggaatcttgctcgatcaaacagcgtaatgttagcggagcttaattcaggaagagacaaggtaaaaacactacagcatgaacttctatgcaaggaggctttacttaaggcaaagaattttgaaatgcagggaaaatcagagatgaaatgtcaaaatgctggctctaagttcaaggaagcagaggaggcaactttgcatgaagcggataatgatgacaaaccacgtattggcaacaagaggcgtgcaacaagaagtcaatctctgggagcttctactaaatgccaaaaggtagaacaatccctcactttacagggaaaagaagagatgaaatgtcaaaatactggccgtcagctcaaggaaggagaggagccagctttgcaggaagctactaaggatgacaaaccatgtgttggcaacaaaatgcgtgctacaagaagtcaatctttgggcacttctactacatgccaaaacattgaacagaaagacaaggttgagaatagaaggcggagtgtgaggaggcagtcttctagatttaaatcccatgaggaagaacagacagaaaacttgtttgagatagaagaagctaaatttccggaaaatccaatgcttgaggatgatcccattccctccatttcatctaccaagcaagaagagaaagaagatagctgcgctgcaaagagtgaaggagtatcacatagatcttcaattggaagaccattgtgcaaggcagttaagaaggataccgaatttcccgaaaattcaatccctaatggcgatcccactcccttaattttatctaccaagaaagagagagaagaaagcggtgccccaaagagtgaaggagtatcacagagatcttcaattgcaagaccattgcggaaagcagttgagaaggttcagtcctacaaagaacctccactccatgtcaaaatgcggagaacagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000280 GO:0000775 GO:0000819 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006996 GO:0007049 GO:0007059 GO:0007135 GO:0008150 GO:0009987 GO:0016043 GO:0022402 GO:0022414 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044427 GO:0044446 GO:0044464 GO:0045132 GO:0045144 GO:0048285 GO:0051276 GO:0051321 GO:0061983 GO:0070192 GO:0071840 GO:0098687 GO:0098813 GO:0140013 GO:1903046

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Shugoshin_C

Protein Analysis

388

Amino Acids

43.81

Weight (kDa)

9.14

Isoelectric Point (pI)

64.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Shugoshin_C	PF07557	362 - 386	5.7e-10	Shugoshin C terminus

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009270)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G44960 AT3G44960 AT3G44960 AT3G44960 AT3G44960
fragaria_vesca	FvH4_3g30760 FvH4_3g30760
malus_domestica	MD03G1126800.v1.1 MD11G1147400.v1.1
prunus_persica	Prupe.6G111900_v2.0.a1 Prupe.6G111900_v2.0.a1
pyrus_communis	pycom11g12070
rosa_chinensis	RchiOBHm_Chr5g0056951
rosa_laevigata	RLG00000035142
rosa_multiflora	Rmu_sc0002035.1_g000003
rosa_roxburghii	Rroxscaffold_1G00023220
rosa_rugosa	Rorug05G0304600
rosa_samantha	Rh5AG374000 Rh5BG385100 Rh5CG408300 Rh5DG398400
rosa_wichuraiana	Rw5G035210

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	24
AccB1I	GGYRCC	1 cut(s)	1043
AccB7I	CCANNNNNTGG	2 cut(s)	446, 629
AccIII	TCCGGA	1 cut(s)	811
AciI	CCGC	8 cut(s)	4, 59, 254, 422, 724, 1041, 1096, 1153
AclWI	GGATC	2 cut(s)	830, 989
AcoI	YGGCCR	2 cut(s)	5, 562
AcsI	RAATTY	4 cut(s)	334, 806, 965, 976
AcyI	GRCGYC	1 cut(s)	21
AfiI	CCNNNNNNNGG	2 cut(s)	446, 629
AflII	CTTAAG	1 cut(s)	323
AgsI	TTSAA	9 cut(s)	53, 95, 158, 341, 391, 695, 924, 981, 1080
AloI	GAACNNNNNNTCC	2 cut(s)	1122, 1154
Alw26I	GTCTC	1 cut(s)	267
AlwI	GGATC	2 cut(s)	830, 989
AlwNI	CAGNNNCTG	1 cut(s)	184
Aor13HI	TCCGGA	1 cut(s)	811
AoxI	GGCC	2 cut(s)	5, 562
ApeKI	GCWGC	3 cut(s)	208, 885, 890
ApoI	RAATTY	4 cut(s)	334, 806, 965, 976
AspLEI	GCGC	1 cut(s)	890
AspS9I	GGNCC	1 cut(s)	85
AsuHPI	GGTGA	2 cut(s)	16, 89
AvaII	GGWCC	1 cut(s)	85
BaeGI	GKGCMC	2 cut(s)	671, 1048
BanI	GGYRCC	1 cut(s)	1043
BbsI	GAAGAC	2 cut(s)	735, 937
BbvI	GCAGC	3 cut(s)	220, 872, 877
BceAI	ACGGC	1 cut(s)	549
BciVI	GTATCC	1 cut(s)	952
BclI	TGATCA	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	267
BfaI	CTAG	1 cut(s)	747
BfmI	CTRYAG	1 cut(s)	290
BfrI	CTTAAG	1 cut(s)	323
BfuI	GTATCC	1 cut(s)	952
BglII	AGATCT	2 cut(s)	917, 1073
BisI	GCNGC	5 cut(s)	5, 59, 209, 886, 891
BlsI	GCNGC	5 cut(s)	6, 60, 210, 887, 892
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BmiI	GGNNCC	3 cut(s)	39, 588, 1045
BpiI	GAAGAC	2 cut(s)	735, 937
BpuEI	CTTGAG	2 cut(s)	557, 848
BsaAI	YACGTR	1 cut(s)	443
BsaBI	GATNNNNATC	1 cut(s)	754
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	72
BsaWI	WCCGGW	1 cut(s)	811
BsaXI	ACNNNNNCTCC	2 cut(s)	1122, 1152
Bsc4I	CCNNNNNNNGG	2 cut(s)	446, 629
Bse118I	RCCGGY	1 cut(s)	34
Bse1I	ACTGG	1 cut(s)	565
Bse3DI	GCAATG	1 cut(s)	1091
Bse8I	GATNNNNATC	1 cut(s)	754
BseAI	TCCGGA	1 cut(s)	811
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	619, 838
BseJI	GATNNNNATC	1 cut(s)	754
BseLI	CCNNNNNNNGG	2 cut(s)	446, 629
BseMI	GCAATG	1 cut(s)	1091
BseMII	CTCAG	1 cut(s)	162
BseNI	ACTGG	1 cut(s)	565
BseRI	GAGGAG	4 cut(s)	30, 416, 599, 748
BseSI	GKGCMC	2 cut(s)	671, 1048
BseX3I	CGGCCG	1 cut(s)	5
BseXI	GCAGC	3 cut(s)	220, 872, 877
Bsh1285I	CGRYCG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	7, 564
BshNI	GGYRCC	1 cut(s)	1043
BsiEI	CGRYCG	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	35, 812
BslI	CCNNNNNNNGG	2 cut(s)	446, 629
BsmAI	GTCTC	1 cut(s)	267
BsnI	GGCC	2 cut(s)	7, 564
Bsp1286I	GDGCHC	2 cut(s)	671, 1048
Bsp13I	TCCGGA	1 cut(s)	811
Bsp143I	GATC	6 cut(s)	123, 233, 835, 917, 994, 1073
BspACI	CCGC	8 cut(s)	4, 59, 254, 422, 724, 1041, 1096, 1153
BspANI	GGCC	2 cut(s)	7, 564
BspCNI	CTCAG	1 cut(s)	163
BspEI	TCCGGA	1 cut(s)	811
BspHI	TCATGA	1 cut(s)	102
BspLI	GGNNCC	3 cut(s)	39, 588, 1045
BspPI	GGATC	2 cut(s)	830, 989
BspT107I	GGYRCC	1 cut(s)	1043
BspTI	CTTAAG	1 cut(s)	323
BsrDI	GCAATG	1 cut(s)	1091
BsrFI	RCCGGY	1 cut(s)	34
BsrI	ACTGG	1 cut(s)	565
BssAI	RCCGGY	1 cut(s)	34
BssECI	CCNNGG	1 cut(s)	72
BssMI	GATC	6 cut(s)	123, 233, 835, 917, 994, 1073
BssNI	GRCGYC	1 cut(s)	21
Bst4CI	ACNGT	1 cut(s)	89
Bst6I	CTCTTC	3 cut(s)	265, 534, 864
BstACI	GRCGYC	1 cut(s)	21
BstAFI	CTTAAG	1 cut(s)	323
BstAPI	GCANNNNNTGC	1 cut(s)	184
BstBAI	YACGTR	1 cut(s)	443
BstC8I	GCNNGC	6 cut(s)	15, 36, 379, 462, 591, 645
BstDEI	CTNAG	3 cut(s)	171, 384, 609
BstDSI	CCRYGG	1 cut(s)	72
BstF5I	GGATG	2 cut(s)	619, 838
BstHHI	GCGC	1 cut(s)	890
BstKTI	GATC	6 cut(s)	126, 236, 838, 920, 997, 1076
BstMAI	GTCTC	1 cut(s)	267
BstMBI	GATC	6 cut(s)	123, 233, 835, 917, 994, 1073
BstMCI	CGRYCG	1 cut(s)	8
BstMWI	GCNNNNNNNGC	4 cut(s)	10, 184, 404, 595
BstNSI	RCATGY	1 cut(s)	684
BstSFI	CTRYAG	1 cut(s)	290
BstSLI	GKGCMC	2 cut(s)	671, 1048
BstV1I	GCAGC	3 cut(s)	220, 872, 877
BstV2I	GAAGAC	2 cut(s)	735, 937
BstX2I	RGATCY	2 cut(s)	917, 1073
BstYI	RGATCY	2 cut(s)	917, 1073
BstZI	CGGCCG	1 cut(s)	5
BsuI	GTATCC	1 cut(s)	952
BsuRI	GGCC	2 cut(s)	7, 564
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	619, 838
Cac8I	GCNNGC	6 cut(s)	15, 36, 379, 462, 591, 645
CaiI	CAGNNNCTG	1 cut(s)	184
CciI	TCATGA	1 cut(s)	102
CfoI	GCGC	1 cut(s)	890
Cfr10I	RCCGGY	1 cut(s)	34
Cfr13I	GGNCC	1 cut(s)	85
CviAII	CATG	7 cut(s)	103, 296, 416, 624, 681, 761, 1142
DdeI	CTNAG	3 cut(s)	171, 384, 609
DpnI	GATC	6 cut(s)	125, 235, 837, 919, 996, 1075
DpnII	GATC	6 cut(s)	123, 233, 835, 917, 994, 1073
DraI	TTTAAA	1 cut(s)	754
EaeI	YGGCCR	2 cut(s)	5, 562
EagI	CGGCCG	1 cut(s)	5
Eam1104I	CTCTTC	3 cut(s)	265, 534, 864
EarI	CTCTTC	3 cut(s)	265, 534, 864
EciI	GGCGGA	1 cut(s)	739
EclXI	CGGCCG	1 cut(s)	5
Eco47I	GGWCC	1 cut(s)	85
Eco52I	CGGCCG	1 cut(s)	5
FaeI	CATG	7 cut(s)	106, 299, 419, 627, 684, 764, 1145
FaiI	YATR	9 cut(s)	104, 297, 307, 417, 625, 682, 762, 915, 1143
FalI	AAGNNNNNCTT	4 cut(s)	103, 135, 646, 678
FatI	CATG	7 cut(s)	102, 295, 415, 623, 680, 760, 1141
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	5 cut(s)	5, 59, 209, 886, 891
FokI	GGATG	2 cut(s)	626, 845
Fsp4HI	GCNGC	5 cut(s)	5, 59, 209, 886, 891
FspBI	CTAG	1 cut(s)	747
GlaI	GCGC	1 cut(s)	889
GluI	GCNGC	5 cut(s)	5, 59, 209, 886, 891
HaeIII	GGCC	2 cut(s)	7, 564
HapII	CCGG	2 cut(s)	35, 812
HhaI	GCGC	1 cut(s)	890
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	7 cut(s)	106, 299, 419, 627, 684, 764, 1145
Hin6I	GCGC	1 cut(s)	888
HinP1I	GCGC	1 cut(s)	888
HinfI	GANTC	1 cut(s)	223
HpaII	CCGG	2 cut(s)	35, 812
HphI	GGTGA	2 cut(s)	16, 89
Hpy188I	TCNGA	3 cut(s)	45, 201, 358
Hpy188III	TCNNGA	5 cut(s)	103, 267, 747, 812, 971
HpyAV	CCTTC	6 cut(s)	572, 714, 896, 949, 1052, 1105
HpyCH4III	ACNGT	1 cut(s)	89
HpyCH4IV	ACGT	2 cut(s)	21, 442
HpyF10VI	GCNNNNNNNGC	4 cut(s)	10, 184, 404, 595
HpyF3I	CTNAG	3 cut(s)	171, 384, 609
HpySE526I	ACGT	2 cut(s)	21, 442
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	7 cut(s)	106, 299, 419, 627, 684, 764, 1145
HspAI	GCGC	1 cut(s)	888
Kpn2I	TCCGGA	1 cut(s)	811
KroI	GCCGGC	1 cut(s)	34
KroNI	GCCGGC	1 cut(s)	36
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	6 cut(s)	123, 233, 835, 917, 994, 1073
LmnI	GCTCC	5 cut(s)	43, 167, 256, 485, 586
Lsp1109I	GCAGC	3 cut(s)	220, 872, 877
MaeI	CTAG	1 cut(s)	747
MaeII	ACGT	2 cut(s)	21, 442
MaeIII	GTNAC	1 cut(s)	22
MalI	GATC	6 cut(s)	125, 235, 837, 919, 996, 1075
MboI	GATC	6 cut(s)	123, 233, 835, 917, 994, 1073
MfeI	CAATTG	2 cut(s)	924, 1080
MflI	RGATCY	2 cut(s)	917, 1073
MhlI	GDGCHC	2 cut(s)	671, 1048
MroI	TCCGGA	1 cut(s)	811
MroNI	GCCGGC	1 cut(s)	34
MseI	TTAA	5 cut(s)	261, 324, 753, 951, 1007
MspCI	CTTAAG	1 cut(s)	323
MspI	CCGG	2 cut(s)	35, 812
MunI	CAATTG	2 cut(s)	924, 1080
MwoI	GCNNNNNNNGC	4 cut(s)	10, 184, 404, 595
NaeI	GCCGGC	1 cut(s)	36
NdeII	GATC	6 cut(s)	123, 233, 835, 917, 994, 1073
NgoMIV	GCCGGC	1 cut(s)	34
NlaIII	CATG	7 cut(s)	106, 299, 419, 627, 684, 764, 1145
NlaIV	GGNNCC	3 cut(s)	39, 588, 1045
NmuCI	GTSAC	1 cut(s)	22
NspI	RCATGY	1 cut(s)	684
PagI	TCATGA	1 cut(s)	102
PdiI	GCCGGC	1 cut(s)	36
PfeI	GAWTC	1 cut(s)	223
PflMI	CCANNNNNTGG	2 cut(s)	446, 629
PkrI	GCNGC	5 cut(s)	6, 60, 210, 887, 892
Ppu21I	YACGTR	1 cut(s)	443
PspN4I	GGNNCC	3 cut(s)	39, 588, 1045
PspPI	GGNCC	1 cut(s)	85
PstNI	CAGNNNCTG	1 cut(s)	184
PsuI	RGATCY	2 cut(s)	917, 1073
SaqAI	TTAA	5 cut(s)	261, 324, 753, 951, 1007
SatI	GCNGC	5 cut(s)	5, 59, 209, 886, 891
Sau3AI	GATC	6 cut(s)	123, 233, 835, 917, 994, 1073
Sau96I	GGNCC	1 cut(s)	85
SduI	GDGCHC	2 cut(s)	671, 1048
SfcI	CTRYAG	1 cut(s)	290
SinI	GGWCC	1 cut(s)	85
SmiI	ATTTAAAT	1 cut(s)	754
SmlI	CTYRAG	3 cut(s)	323, 572, 827
SmoI	CTYRAG	3 cut(s)	323, 572, 827
SsiI	CCGC	8 cut(s)	4, 59, 254, 422, 724, 1041, 1096, 1153
SspMI	CTAG	1 cut(s)	747
SwaI	ATTTAAAT	1 cut(s)	754
TaaI	ACNGT	1 cut(s)	89
TaiI	ACGT	2 cut(s)	24, 445
TaqI	TCGA	1 cut(s)	232
TauI	GCSGC	2 cut(s)	7, 61
TfiI	GAWTC	1 cut(s)	223
Tru1I	TTAA	5 cut(s)	261, 324, 753, 951, 1007
Tru9I	TTAA	5 cut(s)	261, 324, 753, 951, 1007
TseFI	GTSAC	1 cut(s)	22
TseI	GCWGC	3 cut(s)	208, 885, 890
Tsp45I	GTSAC	1 cut(s)	22
TspDTI	ATGAA	5 cut(s)	312, 377, 432, 560, 843
TspGWI	ACGGA	1 cut(s)	61
Van91I	CCANNNNNTGG	2 cut(s)	446, 629
Vha464I	CTTAAG	1 cut(s)	323
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	4 cut(s)	334, 806, 965, 976
XbaI	TCTAGA	1 cut(s)	746
XceI	RCATGY	1 cut(s)	684
XspI	CTAG	1 cut(s)	747
ZraI	GACGTC	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.