Rmu_sc0002094.1_g000033

ribonuclease H protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002094.1
OG0017773
Physical Location & Seq
Reverse (-)
156261 .. 157244
984 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 678 bp
atggtggaagctgaagcaatactctcaatccctttgtctactagggatgtgcatgatagagtgacgtggagactagagaagaatggtaagtttacagtaaaaactgcctatcaattttctttttctacatcttcttctagaaggccatttgatctgtcagtgggtgtaatattttggaagaaattgtggaaggtggatatacctaactcggccaaggtacacatttggagagtgtgtcatgatattttaccttcaagggagagactagcttcgaaaagggttgggttagagacagtgatctgtcctttgtgttctatggcagtggaatctactcttcatatttgtcgggactgttccttcatgaggcagctgttgcaatccaatgctgtggtgttccaggatttcagatttcttgccttgaaaccaggtggagtgagaactagggatataagggtgactcgttggtcagcacctccaattggttggttcaagattaatgttgatggttcctatcaccatgtcactaagacaggaagtgggggctttgttgtaagggattggcaaggcactatgcatcctagtggtgagcatgctgaggtagaggcctggaagcaggctgtgaactttgcggtggagcaagctttcctgcctgctattgtcgaactgactcactgttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RVT_1 RVT_3 zf-RVT

Protein Analysis

225

Amino Acids

25.6

Weight (kDa)

9.38

Isoelectric Point (pI)

38.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-RVT PF13966 31 - 124 2.1e-12 zinc-binding in reverse transcriptase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 463
AccI GTMKAC 1 cut(s) 38
AciI CCGC 1 cut(s) 629
AcoI YGGCCR 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 33
AfaI GTAC 1 cut(s) 219
AfiI CCNNNNNNNGG 2 cut(s) 363, 479
AgsI TTSAA 3 cut(s) 255, 421, 490
AjiI CACGTC 1 cut(s) 66
AjnI CCWGG 3 cut(s) 396, 424, 605
AluBI AGCT 4 cut(s) 11, 269, 370, 641
AluI AGCT 4 cut(s) 11, 269, 370, 641
Alw26I GTCTC 3 cut(s) 64, 256, 284
AoxI GGCC 3 cut(s) 143, 210, 603
ApeKI GCWGC 1 cut(s) 367
AseI ATTAAT 1 cut(s) 495
AsuHPI GGTGA 3 cut(s) 466, 506, 596
AsuII TTCGAA 1 cut(s) 272
BbvCI CCTCAGC 1 cut(s) 594
BbvI GCAGC 1 cut(s) 379
BccI CCATC 1 cut(s) 497
BciT130I CCWGG 3 cut(s) 398, 426, 607
BcoDI GTCTC 3 cut(s) 64, 256, 284
BfaI CTAG 6 cut(s) 42, 74, 138, 266, 441, 579
BisI GCNGC 1 cut(s) 368
BlsI GCNGC 1 cut(s) 369
Bme1390I CCNGG 3 cut(s) 398, 426, 607
BmgBI CACGTC 1 cut(s) 66
BmiI GGNNCC 1 cut(s) 508
BmrFI CCNGG 3 cut(s) 398, 426, 607
BmsI GCATC 1 cut(s) 583
Bpu10I CCTNAGC 1 cut(s) 594
Bpu14I TTCGAA 1 cut(s) 272
BsaJI CCNNGG 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 220, 250
Bsc4I CCNNNNNNNGG 2 cut(s) 363, 479
BseBI CCWGG 3 cut(s) 398, 426, 607
BseDI CCNNGG 1 cut(s) 213
BseGI GGATG 2 cut(s) 52, 574
BseLI CCNNNNNNNGG 2 cut(s) 363, 479
BseMII CTCAG 1 cut(s) 585
BseXI GCAGC 1 cut(s) 379
BshFI GGCC 3 cut(s) 145, 212, 605
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 363, 479
BsmAI GTCTC 3 cut(s) 64, 256, 284
BsmFI GGGAC 1 cut(s) 362
BsnI GGCC 3 cut(s) 145, 212, 605
Bsp119I TTCGAA 1 cut(s) 272
Bsp143I GATC 2 cut(s) 151, 297
BspACI CCGC 1 cut(s) 629
BspANI GGCC 3 cut(s) 145, 212, 605
BspCNI CTCAG 1 cut(s) 586
BspHI TCATGA 2 cut(s) 238, 360
BspLI GGNNCC 1 cut(s) 508
BspT104I TTCGAA 1 cut(s) 272
BssECI CCNNGG 1 cut(s) 213
BssMI GATC 2 cut(s) 151, 297
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 3 cut(s) 398, 426, 607
Bst4CI ACNGT 4 cut(s) 97, 295, 353, 674
Bst6I CTCTTC 1 cut(s) 339
BstAPI GCANNNNNTGC 1 cut(s) 373
BstBI TTCGAA 1 cut(s) 272
BstC8I GCNNGC 4 cut(s) 591, 615, 639, 651
BstDEI CTNAG 2 cut(s) 525, 594
BstENI CCTNNNNNAGG 1 cut(s) 361
BstF5I GGATG 2 cut(s) 52, 574
BstKTI GATC 2 cut(s) 154, 300
BstMAI GTCTC 3 cut(s) 64, 256, 284
BstMBI GATC 2 cut(s) 151, 297
BstMWI GCNNNNNNNGC 1 cut(s) 373
BstNI CCWGG 3 cut(s) 398, 426, 607
BstNSI RCATGY 1 cut(s) 593
BstSCI CCNGG 3 cut(s) 396, 424, 605
BstV1I GCAGC 1 cut(s) 379
BstXI CCANNNNNNTGG 2 cut(s) 388, 483
BsuRI GGCC 3 cut(s) 145, 212, 605
BtrI CACGTC 1 cut(s) 66
BtsCI GGATG 2 cut(s) 52, 574
BtsI GCAGTG 1 cut(s) 327
BtsIMutI CAGTG 4 cut(s) 165, 300, 327, 670
Cac8I GCNNGC 4 cut(s) 591, 615, 639, 651
CciI TCATGA 2 cut(s) 238, 360
CsiI ACCWGGT 1 cut(s) 424
Csp6I GTAC 1 cut(s) 218
CviAII CATG 5 cut(s) 53, 239, 361, 518, 590
CviJI RGCY 9 cut(s) 11, 145, 212, 269, 370, 543, 605, 617, 641
CviKI_1 RGCY 9 cut(s) 11, 145, 212, 269, 370, 543, 605, 617, 641
CviQI GTAC 1 cut(s) 218
DdeI CTNAG 2 cut(s) 525, 594
DpnI GATC 2 cut(s) 153, 299
DpnII GATC 2 cut(s) 151, 297
DrdI GACNNNNNNGTC 1 cut(s) 463
DseDI GACNNNNNNGTC 1 cut(s) 463
EaeI YGGCCR 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 339
EarI CTCTTC 1 cut(s) 339
Eco130I CCWWGG 1 cut(s) 213
Eco147I AGGCCT 1 cut(s) 605
Eco57I CTGAAG 1 cut(s) 33
EcoNI CCTNNNNNAGG 1 cut(s) 361
EcoRII CCWGG 3 cut(s) 396, 424, 605
EcoT14I CCWWGG 1 cut(s) 213
EcoT22I ATGCAT 1 cut(s) 576
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 5 cut(s) 56, 242, 364, 521, 593
FaqI GGGAC 1 cut(s) 362
FatI CATG 5 cut(s) 52, 238, 360, 517, 589
FblI GTMKAC 1 cut(s) 38
Fnu4HI GCNGC 1 cut(s) 368
FokI GGATG 2 cut(s) 59, 561
Fsp4HI GCNGC 1 cut(s) 368
FspBI CTAG 6 cut(s) 42, 74, 138, 266, 441, 579
GluI GCNGC 1 cut(s) 368
HaeIII GGCC 3 cut(s) 145, 212, 605
Hin1II CATG 5 cut(s) 56, 242, 364, 521, 593
HindIII AAGCTT 1 cut(s) 639
HinfI GANTC 3 cut(s) 326, 457, 667
HphI GGTGA 3 cut(s) 466, 506, 596
Hpy166II GTNNAC 4 cut(s) 39, 93, 220, 622
Hpy188I TCNGA 1 cut(s) 407
Hpy188III TCNNGA 5 cut(s) 138, 239, 347, 361, 490
Hpy8I GTNNAC 4 cut(s) 39, 93, 220, 622
HpyAV CCTTC 4 cut(s) 135, 184, 261, 367
HpyCH4III ACNGT 4 cut(s) 97, 295, 353, 674
HpyCH4IV ACGT 1 cut(s) 65
HpyCH4V TGCA 3 cut(s) 52, 376, 574
HpyF10VI GCNNNNNNNGC 1 cut(s) 373
HpyF3I CTNAG 2 cut(s) 525, 594
HpySE526I ACGT 1 cut(s) 65
Hsp92II CATG 5 cut(s) 56, 242, 364, 521, 593
Kzo9I GATC 2 cut(s) 151, 297
LmnI GCTCC 1 cut(s) 634
Lsp1109I GCAGC 1 cut(s) 379
LweI GCATC 1 cut(s) 583
MabI ACCWGGT 1 cut(s) 424
MaeI CTAG 6 cut(s) 42, 74, 138, 266, 441, 579
MaeII ACGT 1 cut(s) 65
MaeIII GTNAC 3 cut(s) 61, 454, 520
MalI GATC 2 cut(s) 153, 299
MboI GATC 2 cut(s) 151, 297
MboII GAAGA 5 cut(s) 91, 123, 126, 190, 326
MfeI CAATTG 1 cut(s) 477
MluCI AATT 3 cut(s) 113, 182, 477
MlyI GAGTC 2 cut(s) 451, 661
MnlI CCTC 4 cut(s) 357, 483, 589, 595
Mph1103I ATGCAT 1 cut(s) 576
MseI TTAA 1 cut(s) 495
MslI CAYNNNNRTG 1 cut(s) 579
MspA1I CMGCKG 1 cut(s) 370
MspR9I CCNGG 3 cut(s) 398, 426, 607
MunI CAATTG 1 cut(s) 477
MvaI CCWGG 3 cut(s) 398, 426, 607
MwoI GCNNNNNNNGC 1 cut(s) 373
NdeII GATC 2 cut(s) 151, 297
NlaIII CATG 5 cut(s) 56, 242, 364, 521, 593
NlaIV GGNNCC 1 cut(s) 508
NmeAIII GCCGAG 1 cut(s) 188
NmuCI GTSAC 3 cut(s) 61, 454, 520
NsiI ATGCAT 1 cut(s) 576
NspI RCATGY 1 cut(s) 593
NspV TTCGAA 1 cut(s) 272
PaeI GCATGC 1 cut(s) 593
PagI TCATGA 2 cut(s) 238, 360
PceI AGGCCT 1 cut(s) 605
PfeI GAWTC 1 cut(s) 326
PfoI TCCNGGA 1 cut(s) 396
PkrI GCNGC 1 cut(s) 369
PleI GAGTC 2 cut(s) 451, 661
PpsI GAGTC 2 cut(s) 451, 661
PshBI ATTAAT 1 cut(s) 495
Psp6I CCWGG 3 cut(s) 396, 424, 605
PspGI CCWGG 3 cut(s) 396, 424, 605
PspN4I GGNNCC 1 cut(s) 508
PvuII CAGCTG 1 cut(s) 370
RsaI GTAC 1 cut(s) 219
RsaNI GTAC 1 cut(s) 218
RseI CAYNNNNRTG 1 cut(s) 579
SaqAI TTAA 1 cut(s) 495
SatI GCNGC 1 cut(s) 368
Sau3AI GATC 2 cut(s) 151, 297
SchI GAGTC 2 cut(s) 451, 661
ScrFI CCNGG 3 cut(s) 398, 426, 607
SexAI ACCWGGT 1 cut(s) 424
SfaNI GCATC 1 cut(s) 583
SfuI TTCGAA 1 cut(s) 272
SmiMI CAYNNNNRTG 1 cut(s) 579
SphI GCATGC 1 cut(s) 593
Sse9I AATT 3 cut(s) 113, 182, 477
SseBI AGGCCT 1 cut(s) 605
SsiI CCGC 1 cut(s) 629
SspI AATATT 1 cut(s) 171
SspMI CTAG 6 cut(s) 42, 74, 138, 266, 441, 579
StuI AGGCCT 1 cut(s) 605
StyD4I CCNGG 3 cut(s) 396, 424, 605
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 4 cut(s) 97, 295, 353, 674
TaiI ACGT 1 cut(s) 68
TaqI TCGA 2 cut(s) 272, 660
TasI AATT 3 cut(s) 113, 182, 477
TfiI GAWTC 1 cut(s) 326
Tru1I TTAA 1 cut(s) 495
Tru9I TTAA 1 cut(s) 495
TscAI CASTG 4 cut(s) 165, 300, 327, 677
TseFI GTSAC 3 cut(s) 61, 454, 520
TseI GCWGC 1 cut(s) 367
Tsp45I GTSAC 3 cut(s) 61, 454, 520
TspDTI ATGAA 2 cut(s) 326, 349
TspRI CASTG 4 cut(s) 165, 300, 327, 677
VspI ATTAAT 1 cut(s) 495
XagI CCTNNNNNAGG 1 cut(s) 361
XbaI TCTAGA 1 cut(s) 137
XceI RCATGY 1 cut(s) 593
XmiI GTMKAC 1 cut(s) 38
XspI CTAG 6 cut(s) 42, 74, 138, 266, 441, 579
Zsp2I ATGCAT 1 cut(s) 576
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.