Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002170.1

Orthogroup ID

OG0006710

Physical Location & Seq

Genomic Coordinates Forward (+)

69879 .. 82448

Gene Structure 12570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002170.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3204 bp

atgccaacttacaatatcagaggcatcgatgtcgatttcccattcgaggcctacgattgccagctcgtttacatggagaaagtcattcagtctctccaacaaagatctaacgcactgttggagagtccgactggaactgggaaaaccctttgtcttctctgcgccacattggcttggaggaagagcttgggggttttctcaactggtccgaatgtgaagatgagtcagatcaatggtgataaatcaggtgcttcattgtcccagtcccagtcccagaccaaagatcatcctaccataatatatgcgtcccgcactcacagccagatccggcaagtaattcaagagttgaaaagaagctcttacaggccgaaaatggtagtgttgggttctcgagagcaactatgcattcatgatgaagtgagttcacttcatggaaaagcacagacgaatgcctgtcacttcctctgtagaaagcgtacaaagcgttattgcaaacattattctcgtactgctgattacttgaagaataattctcatcttggagatgaacctattgacattgaggatttggtcaatactggaagaaagtctgggccgtgcccttattacttatcccgggatcttcataaggttgttgatatattatttgtaccttacaactatcttattgatcgcgggtttagaaaatcactacaaattaattggaaaaacagtattctcatatttgatgaagctcacaacctggaaagcatatgtgcagatgcggcttcttttgacttgccatcttggcttcttacagcatgcatttctgaagcgaaaaattgtattgacctttctgtacaaagaagggatgaatcaactgataaatcaaaaaatccagataactttgcgattcttagagcgcttcttttgaagcttgagaagcgaatttctgaagtgcctattcaatccaaggaattgggatacactaagcctggagcgtatatctatgaactccttgctgatctaaacatcacacatgatactgttcctatgatcattaatataattgaggaagctactctacttattgaggaagataaccagcaaaatgctaaacgcaatgtctgccggctggaaagcattagtgacatcctgaatacaattttcagagatataagcaatgcaaaatcctatcgtgttcatgtacaggaagttcaaggaagtgcaacagatggtttaaagggtaagtcatctaggacactcagctggtggtgctttcatcctggaattgcaatggaggaattctccaagttggatgtaggctctattatattgacatctggcacactatctcccttagaatcatttgcacaggagctgaaaatagagtttcctgtgcggttggaaaatcctcatgttattacccctaatcagatatgggctggagtcgttccagctggcccttcgggttgctctttcaactcctcttatagaactcgtgactcgattgagtataagcaggaacttggaaatgctattgtcaattttgctcgaattgtacctgatggattgcttgtattctttccttcttactaccttttggatcaatgcattgggtgctggaagaatatgagccatgccaattcaactacaatatgggaaagaatttccaaacacaagaaacctgttgtagaacctagacaatcttcattatttctttcatcaattgaggactatatggctaagctgaaggacacctcagcttctggtgcaatattttttgccgtttgccgtggtaaggtaagtgaaggattagattttgccgatcacgctggaagagctgtaattgttactggtatgccatttgccacgtggactgatcctaaggttcgtctgaaacgtgagtacttagatgaacaggcacattctcaacggcaagtatgtaagttgcaggttctgactggcgaagactggtacaatcaacaagcatcacgcgcgtgttactccaaatttggggatgtggtttttacattaacccgtttcttccgggatggagaagctcgggggcctacaaagctgaatttattaacaactgaaaaacagggaaagatatatgagtcggaaattcagcaaccttcagacaaattttattttgataaatttctccctgggaatacacaagtgggtcaaggctgtcctgtaaagttatcatcttccattactgaggctagaagggaaaaagtgttgagcctggtgggtgaaattgtccctgctaatcgctcttctgttacttgctgcaaggatcagtctgtgtcatggaagtgctcaaataacctattaggaaatgagaaaaagcttctttcccttaagagggagggtatgcagtatcaagatagaaaagtaattaatcttactgatgaatcaatattaaatgaaaagcggagtgaagaactgatgacgccttgttctgcgaagaagagtaaagtaagcgcagaacacgatgcagcacaacatattaaaaatcctattgagcattcatcttttacaaaagattttgaatcgcatggccttctttccactataagttcaatgagaagtgaaagctcacatagatctaggtcatctgatagagaaactactcaaaatgctcaagctggttcaaagctgctgcataaagacaatagtgtaacatcgagccctgtgccttctggtgatgaggaaacgagaggttctcaatttcttgttcaggttaaagagaaacttagtgctttggagtataaagaatttgtaaatttgatgaaggcactgaagtccaaagcaatgaacataagtgaagttttgcaatcaattgcgagattgttttctggaccagagaggcttccccttcttaaaagatttaagtattttatcccagcaaagtatcattccatgtatgagcactattttcaaaccaatggatcttctcagagtgagatgcacaacaagaaggtcgacatcaactccacccattttgacttgagcatggagggaccaatatttgatgagataagaagattgtctccagcttttgatgtgaactgttggagaaaaatttcaaggccgggcaatagagctgcagatatgctagccaaagaagctgtgaaaacagatggtataaagttctggaaagaaagtggacctccttggttcaatgagtatgtaattgctgatttgtctggttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000723 GO:0000725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006282 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009892 GO:0009987 GO:0010569 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0032200 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0034645 GO:0036297 GO:0042592 GO:0043007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048229 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070716 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0099402 GO:1901360 GO:1901576 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD_2 Helicase_C_2

Protein Analysis

1067

Amino Acids

120.54

Weight (kDa)

8.63

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79950 AT1G79950 AT1G79950 AT1G79950 AT1G79950 AT1G79950 AT1G79950
fragaria_vesca	FvH4_6g31180 FvH4_6g31180 FvH4_6g31180 FvH4_6g31180
malus_domestica	MD17G1195000.v1.1
prunus_persica	Prupe.3G071000_v2.0.a1 Prupe.3G071000_v2.0.a1 Prupe.3G071000_v2.0.a1
pyrus_communis	pycom17g20090
rosa_chinensis	RchiOBHm_Chr2g0137871
rosa_laevigata	RLG00000019686
rosa_multiflora	Rmu_sc0002170.1_g000014
rosa_roxburghii	Rroxscaffold_2G00106700
rosa_rugosa	Rorug02G0347600
rosa_samantha	Rh2AG393900 Rh2BG401300 Rh2CG380600 Rh2DG416100
rosa_wichuraiana	Rw2G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1924
AccI	GTMKAC	1 cut(s)	2973
AccII	CGCG	3 cut(s)	675, 1977, 1979
AciI	CCGC	5 cut(s)	310, 675, 764, 1381, 2422
AclWI	GGATC	6 cut(s)	319, 627, 1593, 1856, 2292, 2947
AcuI	CTGAAG	5 cut(s)	831, 954, 1751, 2103, 2810
AcvI	CACGTG	1 cut(s)	1854
AcyI	GRCGYC	1 cut(s)	2441
AfaI	GTAC	8 cut(s)	478, 508, 651, 840, 1188, 1542, 1889, 1958
AfeI	AGCGCT	1 cut(s)	903
AfiI	CCNNNNNNNGG	5 cut(s)	46, 1780, 1995, 2352, 2353
AflII	CTTAAG	1 cut(s)	2348
AjnI	CCWGG	5 cut(s)	741, 973, 1264, 2149, 2232
AleI	CACNNNNGTG	1 cut(s)	1978
Alw21I	GWGCWC	2 cut(s)	2309, 2922
Alw26I	GTCTC	2 cut(s)	96, 3045
AlwI	GGATC	6 cut(s)	319, 627, 1593, 1856, 2292, 2947
AlwNI	CAGNNNCTG	3 cut(s)	1360, 1748, 1939
Ama87I	CYCGRG	3 cut(s)	390, 615, 2043
Aor51HI	AGCGCT	1 cut(s)	903
AoxI	GGCC	7 cut(s)	48, 365, 593, 1441, 2048, 2548, 3080
ApeKI	GCWGC	5 cut(s)	2277, 2486, 2647, 2650, 3095
AseI	ATTAAT	3 cut(s)	699, 1041, 2388
Asp700I	GAANNNNTTC	1 cut(s)	3073
AspLEI	GCGC	4 cut(s)	164, 904, 1979, 2474
AspS9I	GGNCC	7 cut(s)	206, 593, 1442, 2048, 2849, 3011, 3158
AsuC2I	CCSGG	4 cut(s)	616, 617, 2030, 3084
AsuHPI	GGTGA	3 cut(s)	248, 2252, 2705
AsuNHI	GCTAGC	1 cut(s)	3106
AvaI	CYCGRG	3 cut(s)	390, 615, 2043
AvaII	GGWCC	4 cut(s)	206, 2849, 3011, 3158
AxyI	CCTNAGG	1 cut(s)	1866
BaeGI	GKGCMC	1 cut(s)	602
BanII	GRGCYC	1 cut(s)	2681
BarI	GAAGNNNNNNTAC	2 cut(s)	1047, 1079
BauI	CACGAG	1 cut(s)	1479
BbrPI	CACGTG	1 cut(s)	1854
BbsI	GAAGAC	2 cut(s)	146, 1956
Bbv12I	GWGCWC	2 cut(s)	2309, 2922
BbvCI	CCTCAGC	1 cut(s)	1741
BbvI	GCAGC	5 cut(s)	2264, 2498, 2634, 2637, 3082
BccI	CCATC	5 cut(s)	790, 1208, 1541, 2027, 3125
BceAI	ACGGC	4 cut(s)	580, 1751, 1758, 1931
BcgI	CGANNNNNNTGC	4 cut(s)	13, 47, 2665, 2699
BciT130I	CCWGG	5 cut(s)	743, 975, 1266, 2151, 2234
BciVI	GTATCC	1 cut(s)	956
BclI	TGATCA	1 cut(s)	1035
BcnI	CCSGG	4 cut(s)	616, 617, 2030, 3084
BcoDI	GTCTC	2 cut(s)	96, 3045
BfaI	CTAG	5 cut(s)	1236, 1680, 2211, 2598, 3107
BfmI	CTRYAG	2 cut(s)	466, 3096
BfoI	RGCGCY	1 cut(s)	905
BfrI	CTTAAG	1 cut(s)	2348
BfuAI	ACCTGC	1 cut(s)	1924
BfuI	GTATCC	1 cut(s)	956
BglI	GCCNNNNNGGC	2 cut(s)	170, 787
BglII	AGATCT	2 cut(s)	104, 2594
BisI	GCNGC	6 cut(s)	765, 2278, 2487, 2648, 2651, 3096
BlpI	GCTNAGC	1 cut(s)	1725
BlsI	GCNGC	6 cut(s)	766, 2279, 2488, 2649, 2652, 3097
BmcAI	AGTACT	1 cut(s)	1889
Bme1390I	CCNGG	9 cut(s)	616, 617, 743, 975, 1266, 2030, 2151, 2234, 3084
Bme18I	GGWCC	4 cut(s)	206, 2849, 3011, 3158
BmeT110I	CYCGRG	3 cut(s)	390, 615, 2043
BmgT120I	GGNCC	7 cut(s)	206, 593, 1442, 2048, 2849, 3011, 3158
BmiI	GGNNCC	2 cut(s)	2049, 3012
BmrFI	CCNGG	9 cut(s)	616, 617, 743, 975, 1266, 2030, 2151, 2234, 3084
BmrI	ACTGGG	3 cut(s)	147, 256, 262
BmsI	GCATC	5 cut(s)	33, 751, 1979, 2473, 2946
BmtI	GCTAGC	1 cut(s)	3110
BmuI	ACTGGG	3 cut(s)	147, 256, 262
BpiI	GAAGAC	2 cut(s)	146, 1956
BplI	GAGNNNNNCTC	4 cut(s)	1271, 1303, 2698, 2730
BpmI	CTGGAG	3 cut(s)	996, 1446, 3027
Bpu10I	CCTNAGC	1 cut(s)	1741
Bpu1102I	GCTNAGC	1 cut(s)	1725
BpuEI	CTTGAG	3 cut(s)	938, 2616, 3019
BpuMI	CCSGG	4 cut(s)	616, 617, 2030, 3084
Bsa29I	ATCGAT	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	1854
BsaHI	GRCGYC	1 cut(s)	2441
BsaJI	CCNNGG	6 cut(s)	615, 951, 1774, 2149, 2150, 3164
BsaXI	ACNNNNNCTCC	4 cut(s)	1318, 1348, 2966, 2996
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 1780, 1995, 2352, 2353
Bse118I	RCCGGY	1 cut(s)	1110
Bse1I	ACTGG	9 cut(s)	136, 142, 208, 262, 268, 583, 1840, 1948, 1958
Bse21I	CCTNAGG	1 cut(s)	1866
Bse3DI	GCAATG	4 cut(s)	1108, 1168, 1281, 2808
BseBI	CCWGG	5 cut(s)	743, 975, 1266, 2151, 2234
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	6 cut(s)	615, 951, 1774, 2149, 2150, 3164
BseGI	GGATG	7 cut(s)	286, 856, 1131, 1261, 1303, 2005, 2038
BseLI	CCNNNNNNNGG	5 cut(s)	46, 1780, 1995, 2352, 2353
BseMI	GCAATG	4 cut(s)	1108, 1168, 1281, 2808
BseMII	CTCAG	4 cut(s)	1258, 1755, 2196, 2960
BseNI	ACTGG	9 cut(s)	136, 142, 208, 262, 268, 583, 1840, 1948, 1958
BseRI	GAGGAG	1 cut(s)	1456
BseSI	GKGCMC	1 cut(s)	602
BseXI	GCAGC	5 cut(s)	2264, 2498, 2634, 2637, 3082
BseYI	CCCAGC	1 cut(s)	2893
BsgI	GTGCAG	1 cut(s)	777
Bsh1236I	CGCG	3 cut(s)	675, 1977, 1979
BshFI	GGCC	7 cut(s)	50, 367, 595, 1443, 2050, 2550, 3082
BshVI	ATCGAT	1 cut(s)	27
BsiHKAI	GWGCWC	2 cut(s)	2309, 2922
BsiHKCI	CYCGRG	3 cut(s)	390, 615, 2043
BsiSI	CCGG	5 cut(s)	328, 616, 1111, 2029, 3083
BslFI	GGGAC	6 cut(s)	244, 250, 256, 292, 2234, 3024
BslI	CCNNNNNNNGG	5 cut(s)	46, 1780, 1995, 2352, 2353
BsmAI	GTCTC	2 cut(s)	96, 3045
BsmFI	GGGAC	6 cut(s)	244, 250, 256, 292, 2234, 3024
BsmI	GAATGC	3 cut(s)	405, 454, 2515
BsnI	GGCC	7 cut(s)	50, 367, 595, 1443, 2050, 2550, 3082
BsoBI	CYCGRG	3 cut(s)	390, 615, 2043
Bsp1286I	GDGCHC	4 cut(s)	602, 2309, 2681, 2922
Bsp1407I	TGTACA	2 cut(s)	838, 1186
Bsp1720I	GCTNAGC	1 cut(s)	1725
BspACI	CCGC	5 cut(s)	310, 675, 764, 1381, 2422
BspANI	GGCC	7 cut(s)	50, 367, 595, 1443, 2050, 2550, 3082
BspCNI	CTCAG	4 cut(s)	1257, 1754, 2197, 2959
BspDI	ATCGAT	1 cut(s)	27
BspFNI	CGCG	3 cut(s)	675, 1977, 1979
BspHI	TCATGA	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	2049, 3012
BspMAI	CTGCAG	1 cut(s)	3100
BspMI	ACCTGC	1 cut(s)	1924
BspOI	GCTAGC	1 cut(s)	3110
BspPI	GGATC	6 cut(s)	319, 627, 1593, 1856, 2292, 2947
BspQI	GCTCTTC	3 cut(s)	176, 1813, 2269
BspTI	CTTAAG	1 cut(s)	2348
BsrDI	GCAATG	4 cut(s)	1108, 1168, 1281, 2808
BsrFI	RCCGGY	1 cut(s)	1110
BsrGI	TGTACA	2 cut(s)	838, 1186
BsrI	ACTGG	9 cut(s)	136, 142, 208, 262, 268, 583, 1840, 1948, 1958
BssAI	RCCGGY	1 cut(s)	1110
BssECI	CCNNGG	6 cut(s)	615, 951, 1774, 2149, 2150, 3164
BssNI	GRCGYC	1 cut(s)	2441
BssSI	CACGAG	1 cut(s)	1479
BssT1I	CCWWGG	2 cut(s)	951, 3164
Bst2BI	CACGAG	1 cut(s)	1479
Bst2UI	CCWGG	5 cut(s)	743, 975, 1266, 2151, 2234
Bst4CI	ACNGT	4 cut(s)	117, 713, 1027, 3062
Bst6I	CTCTTC	4 cut(s)	176, 1813, 2269, 2453
BstACI	GRCGYC	1 cut(s)	2441
BstAFI	CTTAAG	1 cut(s)	2348
BstAPI	GCANNNNNTGC	2 cut(s)	1107, 1599
BstAUI	TGTACA	2 cut(s)	838, 1186
BstBAI	YACGTR	1 cut(s)	1854
BstC8I	GCNNGC	5 cut(s)	62, 802, 1112, 1441, 3108
BstDSI	CCRYGG	1 cut(s)	1774
BstF5I	GGATG	7 cut(s)	286, 856, 1131, 1261, 1303, 2005, 2038
BstFNI	CGCG	3 cut(s)	675, 1977, 1979
BstH2I	RGCGCY	1 cut(s)	905
BstHHI	GCGC	4 cut(s)	164, 904, 1979, 2474
BstMAI	GTCTC	2 cut(s)	96, 3045
BstNI	CCWGG	5 cut(s)	743, 975, 1266, 2151, 2234
BstNSI	RCATGY	1 cut(s)	804
BstSCI	CCNGG	9 cut(s)	614, 615, 741, 973, 1264, 2028, 2149, 2232, 3082
BstSFI	CTRYAG	2 cut(s)	466, 3096
BstSLI	GKGCMC	1 cut(s)	602
BstUI	CGCG	3 cut(s)	675, 1977, 1979
BstV1I	GCAGC	5 cut(s)	2264, 2498, 2634, 2637, 3082
BstV2I	GAAGAC	2 cut(s)	146, 1956
BstX2I	RGATCY	5 cut(s)	104, 324, 619, 2594, 2939
BstXI	CCANNNNNNTGG	1 cut(s)	958
BstYI	RGATCY	5 cut(s)	104, 324, 619, 2594, 2939
Bsu15I	ATCGAT	1 cut(s)	27
Bsu36I	CCTNAGG	1 cut(s)	1866
BsuI	GTATCC	1 cut(s)	956
BsuRI	GGCC	7 cut(s)	50, 367, 595, 1443, 2050, 2550, 3082
BsuTUI	ATCGAT	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	1774
BtsCI	GGATG	7 cut(s)	286, 856, 1131, 1261, 1303, 2005, 2038
BtsIMutI	CAGTG	2 cut(s)	113, 2786
BveI	ACCTGC	1 cut(s)	1924
Cac8I	GCNNGC	5 cut(s)	62, 802, 1112, 1441, 3108
CaiI	CAGNNNCTG	3 cut(s)	1360, 1748, 1939
CciI	TCATGA	1 cut(s)	409
CfoI	GCGC	4 cut(s)	164, 904, 1979, 2474
Cfr10I	RCCGGY	1 cut(s)	1110
Cfr13I	GGNCC	7 cut(s)	206, 593, 1442, 2048, 2849, 3011, 3158
Cfr9I	CCCGGG	1 cut(s)	615
ClaI	ATCGAT	1 cut(s)	27
CseI	GACGC	2 cut(s)	294, 2449
Csp6I	GTAC	8 cut(s)	477, 507, 650, 839, 1187, 1541, 1888, 1957
CspCI	CAANNNNNGTGG	2 cut(s)	2974, 3009
CviQI	GTAC	8 cut(s)	477, 507, 650, 839, 1187, 1541, 1888, 1957
DraI	TTTAAA	1 cut(s)	1221
Eam1104I	CTCTTC	4 cut(s)	176, 1813, 2269, 2453
EarI	CTCTTC	4 cut(s)	176, 1813, 2269, 2453
Eco130I	CCWWGG	2 cut(s)	951, 3164
Eco147I	AGGCCT	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	2681
Eco47I	GGWCC	4 cut(s)	206, 2849, 3011, 3158
Eco47III	AGCGCT	1 cut(s)	903
Eco57I	CTGAAG	5 cut(s)	831, 954, 1751, 2103, 2810
Eco72I	CACGTG	1 cut(s)	1854
Eco81I	CCTNAGG	1 cut(s)	1866
Eco88I	CYCGRG	3 cut(s)	390, 615, 2043
EcoO109I	RGGNCCY	1 cut(s)	2048
EcoRI	GAATTC	1 cut(s)	1283
EcoRII	CCWGG	5 cut(s)	741, 973, 1264, 2149, 2232
EcoT14I	CCWWGG	2 cut(s)	951, 3164
EcoT22I	ATGCAT	3 cut(s)	407, 806, 1595
EcoT38I	GRGCYC	1 cut(s)	2681
ErhI	CCWWGG	2 cut(s)	951, 3164
FalI	AAGNNNNNCTT	4 cut(s)	343, 375, 2727, 2759
FaqI	GGGAC	6 cut(s)	244, 250, 256, 292, 2234, 3024
FauI	CCCGC	2 cut(s)	317, 668
FauNDI	CATATG	1 cut(s)	752
FbaI	TGATCA	1 cut(s)	1035
FblI	GTMKAC	1 cut(s)	2973
Fnu4HI	GCNGC	6 cut(s)	765, 2278, 2487, 2648, 2651, 3096
FokI	GGATG	7 cut(s)	273, 863, 1118, 1248, 1310, 2012, 2045
FriOI	GRGCYC	1 cut(s)	2681
Fsp4HI	GCNGC	6 cut(s)	765, 2278, 2487, 2648, 2651, 3096
FspBI	CTAG	5 cut(s)	1236, 1680, 2211, 2598, 3107
GlaI	GCGC	4 cut(s)	163, 903, 1978, 2473
GluI	GCNGC	6 cut(s)	765, 2278, 2487, 2648, 2651, 3096
GsaI	CCCAGC	1 cut(s)	2897
GsuI	CTGGAG	3 cut(s)	996, 1446, 3027
HaeII	RGCGCY	1 cut(s)	905
HaeIII	GGCC	7 cut(s)	50, 367, 595, 1443, 2050, 2550, 3082
HapII	CCGG	5 cut(s)	328, 616, 1111, 2029, 3083
HgaI	GACGC	2 cut(s)	294, 2449
HhaI	GCGC	4 cut(s)	164, 904, 1979, 2474
Hin1I	GRCGYC	1 cut(s)	2441
Hin6I	GCGC	4 cut(s)	162, 902, 1977, 2472
HinP1I	GCGC	4 cut(s)	162, 902, 1977, 2472
HincII	GTYRAC	1 cut(s)	2974
HindII	GTYRAC	1 cut(s)	2974
HindIII	AAGCTT	2 cut(s)	914, 2336
HpaII	CCGG	5 cut(s)	328, 616, 1111, 2029, 3083
HphI	GGTGA	3 cut(s)	248, 2252, 2705
Hpy166II	GTNNAC	6 cut(s)	70, 425, 1857, 2974, 3058, 3158
Hpy8I	GTNNAC	6 cut(s)	70, 425, 1857, 2974, 3058, 3158
HpyCH4III	ACNGT	4 cut(s)	117, 713, 1027, 3062
HpyCH4IV	ACGT	2 cut(s)	1853, 1882
HpySE526I	ACGT	2 cut(s)	1853, 1882
Hsp92I	GRCGYC	1 cut(s)	2441
HspAI	GCGC	4 cut(s)	162, 902, 1977, 2472
KroI	GCCGGC	1 cut(s)	1110
KroNI	GCCGGC	1 cut(s)	1112
Ksp22I	TGATCA	1 cut(s)	1035
LguI	GCTCTTC	3 cut(s)	176, 1813, 2269
LmnI	GCTCC	2 cut(s)	977, 1357
Lsp1109I	GCAGC	5 cut(s)	2264, 2498, 2634, 2637, 3082
LweI	GCATC	5 cut(s)	33, 751, 1979, 2473, 2946
MaeI	CTAG	5 cut(s)	1236, 1680, 2211, 2598, 3107
MaeII	ACGT	2 cut(s)	1853, 1882
MaeIII	GTNAC	7 cut(s)	455, 1127, 1481, 1831, 1982, 2269, 2668
MfeI	CAATTG	2 cut(s)	1707, 2829
MflI	RGATCY	5 cut(s)	104, 324, 619, 2594, 2939
MhlI	GDGCHC	4 cut(s)	602, 2309, 2681, 2922
MlyI	GAGTC	5 cut(s)	133, 232, 1437, 1478, 2108
MmeI	TCCRAC	7 cut(s)	99, 121, 152, 1275, 1365, 2082, 3044
Mph1103I	ATGCAT	3 cut(s)	407, 806, 1595
MroNI	GCCGGC	1 cut(s)	1110
MroXI	GAANNNNTTC	1 cut(s)	3073
MslI	CAYNNNNRTG	2 cut(s)	1978, 2302
MspA1I	CMGCKG	2 cut(s)	1248, 1439
MspCI	CTTAAG	1 cut(s)	2348
MspI	CCGG	5 cut(s)	328, 616, 1111, 2029, 3083
MspR9I	CCNGG	9 cut(s)	616, 617, 743, 975, 1266, 2030, 2151, 2234, 3084
MunI	CAATTG	2 cut(s)	1707, 2829
Mva1269I	GAATGC	3 cut(s)	405, 454, 2515
MvaI	CCWGG	5 cut(s)	743, 975, 1266, 2151, 2234
MvnI	CGCG	3 cut(s)	675, 1977, 1979
NaeI	GCCGGC	1 cut(s)	1112
NciI	CCSGG	4 cut(s)	616, 617, 2030, 3084
NdeI	CATATG	1 cut(s)	752
NgoMIV	GCCGGC	1 cut(s)	1110
NheI	GCTAGC	1 cut(s)	3106
NlaIV	GGNNCC	2 cut(s)	2049, 3012
NmuCI	GTSAC	3 cut(s)	455, 1127, 1481
NsiI	ATGCAT	3 cut(s)	407, 806, 1595
NspI	RCATGY	1 cut(s)	804
OliI	CACNNNNGTG	1 cut(s)	1978
PaeI	GCATGC	1 cut(s)	804
PaeR7I	CTCGAG	1 cut(s)	390
PagI	TCATGA	1 cut(s)	409
PasI	CCCWGGG	1 cut(s)	2150
PceI	AGGCCT	1 cut(s)	50
PciSI	GCTCTTC	3 cut(s)	176, 1813, 2269
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 1879
PctI	GAATGC	3 cut(s)	405, 454, 2515
PdiI	GCCGGC	1 cut(s)	1112
PdmI	GAANNNNTTC	1 cut(s)	3073
PfeI	GAWTC	5 cut(s)	854, 892, 1343, 2402, 2540
PfoI	TCCNGGA	2 cut(s)	1264, 2028
PkrI	GCNGC	6 cut(s)	766, 2279, 2488, 2649, 2652, 3097
PleI	GAGTC	5 cut(s)	132, 231, 1436, 1478, 2107
PmaCI	CACGTG	1 cut(s)	1854
PmlI	CACGTG	1 cut(s)	1854
PpsI	GAGTC	5 cut(s)	132, 231, 1436, 1478, 2107
Ppu21I	YACGTR	1 cut(s)	1854
PshBI	ATTAAT	3 cut(s)	699, 1041, 2388
Psp6I	CCWGG	5 cut(s)	741, 973, 1264, 2149, 2232
PspCI	CACGTG	1 cut(s)	1854
PspFI	CCCAGC	1 cut(s)	2893
PspGI	CCWGG	5 cut(s)	741, 973, 1264, 2149, 2232
PspN4I	GGNNCC	2 cut(s)	2049, 3012
PspPI	GGNCC	7 cut(s)	206, 593, 1442, 2048, 2849, 3011, 3158
PsrI	GAACNNNNNNTAC	2 cut(s)	1179, 1211
PstI	CTGCAG	1 cut(s)	3100
PstNI	CAGNNNCTG	3 cut(s)	1360, 1748, 1939
PsuI	RGATCY	5 cut(s)	104, 324, 619, 2594, 2939
PvuII	CAGCTG	2 cut(s)	1248, 1439
RsaI	GTAC	8 cut(s)	478, 508, 651, 840, 1188, 1542, 1889, 1958
RsaNI	GTAC	8 cut(s)	477, 507, 650, 839, 1187, 1541, 1888, 1957
RseI	CAYNNNNRTG	2 cut(s)	1978, 2302
SalI	GTCGAC	1 cut(s)	2972
SapI	GCTCTTC	3 cut(s)	176, 1813, 2269
SatI	GCNGC	6 cut(s)	765, 2278, 2487, 2648, 2651, 3096
Sau96I	GGNCC	7 cut(s)	206, 593, 1442, 2048, 2849, 3011, 3158
ScaI	AGTACT	1 cut(s)	1889
SchI	GAGTC	5 cut(s)	133, 232, 1437, 1478, 2108
ScrFI	CCNGG	9 cut(s)	616, 617, 743, 975, 1266, 2030, 2151, 2234, 3084
SduI	GDGCHC	4 cut(s)	602, 2309, 2681, 2922
SfaNI	GCATC	5 cut(s)	33, 751, 1979, 2473, 2946
SfcI	CTRYAG	2 cut(s)	466, 3096
Sfr274I	CTCGAG	1 cut(s)	390
SinI	GGWCC	4 cut(s)	206, 2849, 3011, 3158
SlaI	CTCGAG	1 cut(s)	390
SmaI	CCCGGG	1 cut(s)	617
SmiMI	CAYNNNNRTG	2 cut(s)	1978, 2302
SmlI	CTYRAG	5 cut(s)	390, 917, 2348, 2631, 2998
SmoI	CTYRAG	5 cut(s)	390, 917, 2348, 2631, 2998
SphI	GCATGC	1 cut(s)	804
SseBI	AGGCCT	1 cut(s)	50
SsiI	CCGC	5 cut(s)	310, 675, 764, 1381, 2422
SspI	AATATT	3 cut(s)	1758, 2409, 3018
SspMI	CTAG	5 cut(s)	1236, 1680, 2211, 2598, 3107
StuI	AGGCCT	1 cut(s)	50
StyD4I	CCNGG	9 cut(s)	614, 615, 741, 973, 1264, 2028, 2149, 2232, 3082
StyI	CCWWGG	2 cut(s)	951, 3164
TaaI	ACNGT	4 cut(s)	117, 713, 1027, 3062
TaiI	ACGT	2 cut(s)	1856, 1885
TaqI	TCGA	8 cut(s)	27, 33, 45, 391, 1487, 1534, 2675, 2973
TatI	WGTACW	3 cut(s)	838, 1186, 1887
TauI	GCSGC	1 cut(s)	767
TfiI	GAWTC	5 cut(s)	854, 892, 1343, 2402, 2540
TscAI	CASTG	2 cut(s)	120, 2793
TseFI	GTSAC	3 cut(s)	455, 1127, 1481
TseI	GCWGC	5 cut(s)	2277, 2486, 2647, 2650, 3095
Tsp45I	GTSAC	3 cut(s)	455, 1127, 1481
TspMI	CCCGGG	1 cut(s)	615
TspRI	CASTG	2 cut(s)	120, 2793
Vha464I	CTTAAG	1 cut(s)	2348
VpaK11BI	GGWCC	4 cut(s)	206, 2849, 3011, 3158
VspI	ATTAAT	3 cut(s)	699, 1041, 2388
XceI	RCATGY	1 cut(s)	804
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1851
XhoI	CTCGAG	1 cut(s)	390
XmaI	CCCGGG	1 cut(s)	615
XmiI	GTMKAC	1 cut(s)	2973
XmnI	GAANNNNTTC	1 cut(s)	3073
XspI	CTAG	5 cut(s)	1236, 1680, 2211, 2598, 3107
ZrmI	AGTACT	1 cut(s)	1889
Zsp2I	ATGCAT	3 cut(s)	407, 806, 1595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.