Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006710

Physical Location & Seq

Genomic Coordinates Forward (+)

43532227 .. 43533669

Gene Structure 1443 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0347600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 669 bp

ATGCTGGAGGACAGTGTGAAGAAGCTCAAGAGTCCCAAAATCTCACCTGGCCCGACGCTGTGTAAGAGCCAAGTCGATTGTGCGCTTGATTTTCTTGTTGATTGGGTCTACGAGTCTTGTGGGTCGGTCTCATTTTCGAGCCTGGAGCACCCCAAGTTCCGAGCTTTTCTTAACCAGGTGGGCTTGCCGGTGATTTCCCGGAGGGAGTTCACCGGGTCAAGGTTGGATGCTAAGTTTGAGGAAGCGAAGGTCGAGTCGGAAGCCAGAATTAGAGACGCTATGTTCTTCCAGATTGCCTCTGATGGATGGAAGTCCAAGAATGCCGGGGGTTTAGCTTGTGTTGGACTACATAACTTTCTTCGCAAAGAATGTCGCTCTGATGAATTTCCCGTTGAACCAGAAGATGATCAATCTTCATCATATCTAGACATAGAAGATGAAAATCTTGAACTACTTTCTCAAAGCCAACAACAACAAAGAGCGGAAGCTAATGCTATTGCTAATGCTATGTGGAATGATAGGCCGCGGAATGATGATAATGGAAATCAAGAGGATAACAATGAGGATCAAGACAATGACAATGACAATAATGAGGAACACATAAACGATGAGAATCAAGAGGTTTATGATGATAATGAGGTTGGAATGGAGGAGTATGCATCATTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000723 GO:0000725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006282 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009892 GO:0009987 GO:0010569 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0032200 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0034645 GO:0036297 GO:0042592 GO:0043007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048229 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070716 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0099402 GO:1901360 GO:1901576 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD_2 Helicase_C_2

Protein Analysis

222

Amino Acids

25.25

Weight (kDa)

4.3

Isoelectric Point (pI)

56.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79950 AT1G79950 AT1G79950 AT1G79950 AT1G79950 AT1G79950 AT1G79950
fragaria_vesca	FvH4_6g31180 FvH4_6g31180 FvH4_6g31180 FvH4_6g31180
malus_domestica	MD17G1195000.v1.1
prunus_persica	Prupe.3G071000_v2.0.a1 Prupe.3G071000_v2.0.a1 Prupe.3G071000_v2.0.a1
pyrus_communis	pycom17g20090
rosa_chinensis	RchiOBHm_Chr2g0137871
rosa_laevigata	RLG00000019686
rosa_multiflora	Rmu_sc0002170.1_g000014
rosa_roxburghii	Rroxscaffold_2G00106700
rosa_rugosa	Rorug02G0347600
rosa_samantha	Rh2AG393900 Rh2BG401300 Rh2CG380600 Rh2DG416100
rosa_wichuraiana	Rw2G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	482
AccI	GTMKAC	1 cut(s)	108
AccII	CGCG	1 cut(s)	526
AciI	CCGC	3 cut(s)	482, 524, 526
AclWI	GGATC	1 cut(s)	573
AcsI	RAATTY	1 cut(s)	383
AfiI	CCNNNNNNNGG	1 cut(s)	219
AgsI	TTSAA	2 cut(s)	395, 449
AjnI	CCWGG	3 cut(s)	46, 141, 174
AluBI	AGCT	4 cut(s)	25, 164, 335, 488
AluI	AGCT	4 cut(s)	25, 164, 335, 488
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	2 cut(s)	133, 267
AlwI	GGATC	1 cut(s)	573
AoxI	GGCC	2 cut(s)	49, 521
ApoI	RAATTY	1 cut(s)	383
ArsI	GACNNNNNNTTYG	2 cut(s)	239, 271
AspLEI	GCGC	1 cut(s)	85
AspS9I	GGNCC	1 cut(s)	50
AsuC2I	CCSGG	3 cut(s)	199, 214, 325
AsuHPI	GGTGA	3 cut(s)	36, 202, 202
Bbv12I	GWGCWC	1 cut(s)	150
BccI	CCATC	2 cut(s)	296, 300
BciT130I	CCWGG	3 cut(s)	48, 143, 176
BclI	TGATCA	1 cut(s)	406
BcnI	CCSGG	3 cut(s)	199, 214, 325
BcoDI	GTCTC	2 cut(s)	133, 267
BfaI	CTAG	1 cut(s)	425
BisI	GCNGC	1 cut(s)	524
BlsI	GCNGC	1 cut(s)	525
Bme1390I	CCNGG	6 cut(s)	48, 143, 176, 199, 214, 325
BmgT120I	GGNCC	1 cut(s)	50
BmrFI	CCNGG	6 cut(s)	48, 143, 176, 199, 214, 325
BmsI	GCATC	1 cut(s)	217
BpmI	CTGGAG	2 cut(s)	26, 164
BpuEI	CTTGAG	1 cut(s)	11
BpuMI	CCSGG	3 cut(s)	199, 214, 325
BsaBI	GATNNNNATC	2 cut(s)	441, 612
BsaI	GGTCTC	1 cut(s)	133
BsaJI	CCNNGG	2 cut(s)	324, 524
Bsc4I	CCNNNNNNNGG	1 cut(s)	219
Bse118I	RCCGGY	1 cut(s)	187
Bse8I	GATNNNNATC	2 cut(s)	441, 612
BseBI	CCWGG	3 cut(s)	48, 143, 176
BseDI	CCNNGG	2 cut(s)	324, 524
BseGI	GGATG	2 cut(s)	232, 311
BseJI	GATNNNNATC	2 cut(s)	441, 612
BseLI	CCNNNNNNNGG	1 cut(s)	219
BseRI	GAGGAG	1 cut(s)	665
Bsh1236I	CGCG	1 cut(s)	526
BshFI	GGCC	2 cut(s)	51, 523
BsiHKAI	GWGCWC	1 cut(s)	150
BsiSI	CCGG	4 cut(s)	188, 199, 213, 324
BslFI	GGGAC	1 cut(s)	18
BslI	CCNNNNNNNGG	1 cut(s)	219
BsmAI	GTCTC	2 cut(s)	133, 267
BsmBI	CGTCTC	1 cut(s)	267
BsmFI	GGGAC	1 cut(s)	18
BsmI	GAATGC	1 cut(s)	325
BsnI	GGCC	2 cut(s)	51, 523
Bso31I	GGTCTC	1 cut(s)	133
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp143I	GATC	2 cut(s)	406, 565
BspACI	CCGC	3 cut(s)	482, 524, 526
BspANI	GGCC	2 cut(s)	51, 523
BspFNI	CGCG	1 cut(s)	526
BspPI	GGATC	1 cut(s)	573
BspTNI	GGTCTC	1 cut(s)	133
BsrBI	CCGCTC	1 cut(s)	482
BsrFI	RCCGGY	1 cut(s)	187
BssAI	RCCGGY	1 cut(s)	187
BssECI	CCNNGG	2 cut(s)	324, 524
BssMI	GATC	2 cut(s)	406, 565
Bst2UI	CCWGG	3 cut(s)	48, 143, 176
Bst4CI	ACNGT	1 cut(s)	14
BstC8I	GCNNGC	1 cut(s)	185
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	1 cut(s)	524
BstF5I	GGATG	2 cut(s)	232, 311
BstFNI	CGCG	1 cut(s)	526
BstHHI	GCGC	1 cut(s)	85
BstKTI	GATC	2 cut(s)	409, 568
BstMAI	GTCTC	2 cut(s)	133, 267
BstMBI	GATC	2 cut(s)	406, 565
BstNI	CCWGG	3 cut(s)	48, 143, 176
BstSCI	CCNGG	6 cut(s)	46, 141, 174, 197, 212, 323
BstUI	CGCG	1 cut(s)	526
BsuRI	GGCC	2 cut(s)	51, 523
BtgI	CCRYGG	1 cut(s)	524
BtsCI	GGATG	2 cut(s)	232, 311
BtsIMutI	CAGTG	1 cut(s)	19
Cac8I	GCNNGC	1 cut(s)	185
CfoI	GCGC	1 cut(s)	85
Cfr10I	RCCGGY	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	50
Cfr42I	CCGCGG	1 cut(s)	527
CseI	GACGC	2 cut(s)	64, 284
CsiI	ACCWGGT	1 cut(s)	174
DdeI	CTNAG	1 cut(s)	231
DpnI	GATC	2 cut(s)	408, 567
DpnII	GATC	2 cut(s)	406, 565
Eco31I	GGTCTC	1 cut(s)	133
EcoRII	CCWGG	3 cut(s)	46, 141, 174
EcoT22I	ATGCAT	1 cut(s)	661
Esp3I	CGTCTC	1 cut(s)	267
FaiI	YATR	8 cut(s)	281, 351, 421, 431, 509, 602, 627, 657
FaqI	GGGAC	1 cut(s)	18
FbaI	TGATCA	1 cut(s)	406
FblI	GTMKAC	1 cut(s)	108
Fnu4HI	GCNGC	1 cut(s)	524
FokI	GGATG	2 cut(s)	239, 318
Fsp4HI	GCNGC	1 cut(s)	524
FspBI	CTAG	1 cut(s)	425
GlaI	GCGC	1 cut(s)	84
GluI	GCNGC	1 cut(s)	524
GsuI	CTGGAG	2 cut(s)	26, 164
HaeIII	GGCC	2 cut(s)	51, 523
HapII	CCGG	4 cut(s)	188, 199, 213, 324
HgaI	GACGC	2 cut(s)	64, 284
HhaI	GCGC	1 cut(s)	85
Hin6I	GCGC	1 cut(s)	83
HinP1I	GCGC	1 cut(s)	83
HinfI	GANTC	4 cut(s)	31, 113, 254, 613
HpaII	CCGG	4 cut(s)	188, 199, 213, 324
HphI	GGTGA	3 cut(s)	36, 202, 202
Hpy166II	GTNNAC	2 cut(s)	109, 210
Hpy188I	TCNGA	4 cut(s)	161, 259, 301, 379
Hpy188III	TCNNGA	7 cut(s)	28, 289, 425, 446, 548, 569, 617
Hpy8I	GTNNAC	2 cut(s)	109, 210
Hpy99I	CGWCG	1 cut(s)	58
HpyAV	CCTTC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	14
HpyCH4V	TGCA	1 cut(s)	659
HpyF3I	CTNAG	1 cut(s)	231
HspAI	GCGC	1 cut(s)	83
Ksp22I	TGATCA	1 cut(s)	406
KspI	CCGCGG	1 cut(s)	527
Kzo9I	GATC	2 cut(s)	406, 565
LmnI	GCTCC	1 cut(s)	145
LweI	GCATC	1 cut(s)	217
MabI	ACCWGGT	1 cut(s)	174
MaeI	CTAG	1 cut(s)	425
MalI	GATC	2 cut(s)	408, 567
MbiI	CCGCTC	1 cut(s)	482
MboI	GATC	2 cut(s)	406, 565
MboII	GAAGA	6 cut(s)	31, 277, 350, 405, 413, 446
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	2 cut(s)	267, 383
MlyI	GAGTC	3 cut(s)	40, 122, 263
MmeI	TCCRAC	4 cut(s)	204, 237, 322, 622
MnlI	CCTC	9 cut(s)	195, 232, 307, 544, 556, 586, 613, 631, 643
Mph1103I	ATGCAT	1 cut(s)	661
MseI	TTAA	1 cut(s)	171
MspA1I	CMGCKG	1 cut(s)	526
MspI	CCGG	4 cut(s)	188, 199, 213, 324
MspR9I	CCNGG	6 cut(s)	48, 143, 176, 199, 214, 325
Mva1269I	GAATGC	1 cut(s)	325
MvaI	CCWGG	3 cut(s)	48, 143, 176
MvnI	CGCG	1 cut(s)	526
NciI	CCSGG	3 cut(s)	199, 214, 325
NdeII	GATC	2 cut(s)	406, 565
NsiI	ATGCAT	1 cut(s)	661
PctI	GAATGC	1 cut(s)	325
PfeI	GAWTC	1 cut(s)	613
PfoI	TCCNGGA	1 cut(s)	197
PkrI	GCNGC	1 cut(s)	525
PleI	GAGTC	3 cut(s)	39, 121, 262
PpsI	GAGTC	3 cut(s)	39, 121, 262
Psp6I	CCWGG	3 cut(s)	46, 141, 174
PspGI	CCWGG	3 cut(s)	46, 141, 174
PspPI	GGNCC	1 cut(s)	50
SacII	CCGCGG	1 cut(s)	527
SaqAI	TTAA	1 cut(s)	171
SatI	GCNGC	1 cut(s)	524
Sau3AI	GATC	2 cut(s)	406, 565
Sau96I	GGNCC	1 cut(s)	50
SchI	GAGTC	3 cut(s)	40, 122, 263
ScrFI	CCNGG	6 cut(s)	48, 143, 176, 199, 214, 325
SduI	GDGCHC	1 cut(s)	150
SexAI	ACCWGGT	1 cut(s)	174
SfaNI	GCATC	1 cut(s)	217
Sfr303I	CCGCGG	1 cut(s)	527
SgrBI	CCGCGG	1 cut(s)	527
SmlI	CTYRAG	1 cut(s)	26
SmoI	CTYRAG	1 cut(s)	26
Sse9I	AATT	2 cut(s)	267, 383
SsiI	CCGC	3 cut(s)	482, 524, 526
SspMI	CTAG	1 cut(s)	425
StyD4I	CCNGG	6 cut(s)	46, 141, 174, 197, 212, 323
TaaI	ACNGT	1 cut(s)	14
TaqI	TCGA	3 cut(s)	75, 137, 252
TaqII	GACCGA	1 cut(s)	115
TasI	AATT	2 cut(s)	267, 383
TauI	GCSGC	1 cut(s)	526
TfiI	GAWTC	1 cut(s)	613
Tru1I	TTAA	1 cut(s)	171
Tru9I	TTAA	1 cut(s)	171
TscAI	CASTG	1 cut(s)	19
TspDTI	ATGAA	3 cut(s)	396, 405, 453
TspRI	CASTG	1 cut(s)	19
XapI	RAATTY	1 cut(s)	383
XbaI	TCTAGA	1 cut(s)	424
XmiI	GTMKAC	1 cut(s)	108
XspI	CTAG	1 cut(s)	425
Zsp2I	ATGCAT	1 cut(s)	661

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.