Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2B

Orthogroup ID

OG0006710

Physical Location & Seq

Genomic Coordinates Forward (+)

56945959 .. 56958006

Gene Structure 12048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2BG401300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3108 bp

ATGCCAACTTACAATATCAGAGGCATCGATGTCGATTTCCCATTCGAGGCCTACGATTGCCAGCTCGTTTACATGGAGAAAGTCATTCAGTCTCTCCAACAAAGATCTAACGCACTGTTGGAGAGTCCGACTGGAACTGGGAAAACCCTTTGTCTTCTCTGCGCCACATTGGCTTGGAGGAAGAGCTTGGGGGTTTTCTCAACTGGTCCGAATGTGAAGATGAGTCAGATCAATGGTGATAAATCAGGTGCTTCATTGTCCCAGTCCCAGTCCCAGACCAAAGATCATCCTACCATAATATATGCGTCCCGCACTCACAGCCAGATCCGGCAAGTAATTCAAGAGTTGAAAAGAAGCTCTTACAGGCCGAAAATGGTAGTATTGGGTTCTCGAGAGCAACTATGCATTCATGATGAAGTGAGTTCACTTCATGGAAAAGCACAGACGAATGCCTGTCACTTCCTCTGTAGAAAGCGTACAAAGCGTTATTGCAAACATTATTCTCGTACTGCTGATTACTTGAAGAATAATTCTCATCTTGGAGATGAACCTATTGACATTGAGGATTTGGTCAATACTGGAAGAAAGTCTGGGCCGTGCCCTTATTACTTATCCCGGGATCTTCATAAGGTTGTTGATATATTATTTGTACCTTACAACTATCTTATTGATCGCGGGTTTAGAAAATCACTACAAATTAATTGGAAAAACAGTATTCTCATATTTGATGAAGCTCACAACCTGGAAAGCATATGTGCAGATGCGGCTTCTTTTGACTTGCCATCTTGGCTTCTTACAGCATGCATTTCTGAAGCGAAAAATTGTATTGACCTTTCTGTACAAAGAAGGGATGAATCAACCGATAAATCAAAAAATCCAGATAACTTTGCGATTCTTAGAGCGCTTCTTTTGAAGCTTGAGAAGCGAATTTCTGAAGTGCCTATTCAATCCAAGGAATTGGGATACACTAAGCCTGGAGCGTATATCTATGAACTCCTTGCTGATCTAAACATCACACATGATACTGTTCCTATGATCATTAATATAATTGAGGAAGCTACTCTACTTATTGAGGAAGATAACCAGCAGAATGCTAAACGCAATGTCTGCCGGCTGGAAAGCATTAGTGACATCCTGAATACAATTTTCAGAGATATAAGCAATGCAAAATCCTATCGTGTTCATGTACAGGAAGTTCAAGGAAGTGCAACAGATGGTTTAAAGGGTAAGTCATCTAGGACACTCAGCTGGTGGTGCTTTCATCCTGGAATTGCAATGGAGGAATTCTCCAAGTTGGATGTAGGCTCTATTATATTGACATCTGGCACACTATCTCCCTTAGAATCATTTGCACAGGAGCTGAAAATAGAGTTTCCTGTGCGGTTGGAAAATCCTCATGTTATTACCCCTAATCAGATATGGGCTGGAGTCGTTCCAGCTGGCCCTTCGGGTTGCTCTTTCAACTCCTCTTATAGAACTCGTGACTCGATTGAGTATAAGCAGGAACTTGGAAATGCTATTGTCAATTTTGCTCGAATTGTACCTGATGGATTGCTTGTATTCTTTCCTTCTTACTACCTTTTGGATCAATGCATTGGGTGCTGGAAGAATATGAGCCATGCCAATTCAACTACAATATGGGAAAGAATTTCCAAACACAAGAAACCTGTTGTAGAACCTAGACAATCTTCATTATTTCTTTCATCAATTGAGGACTATATGGCTAAGCTGAAGGACACCTCAGCTTCTGGTGCAATATTTTTTGCCGTTTGCCGTGGTAAGGTAAGTGAAGGATTAGATTTTGCCGATCACGCTGGAAGAGCTGTAATTGTTACTGGTATGCCATTTGCCACGTGGACTGATCCTAAGGTTCGTCTGAAACGTGAGTACTTAGATGAACAGGCACATTCTCAACGGCAAGTATGTAAGGTTCTGACTGGCGAAGACTGGTACAATCAACAAGCATCACGCGCGGTGAATCAGGCTGTTGGACGTGTAATCCGGCATCGTCATGATTATGGAGCAATTATTTTTCTTGATGAAAGGTTTGCACAGCCAAATCGTCAATCTCAAATATCTCTCTGGATACGACCTCATATCAAGTGTTACTCCAAATTTGGGGATGTGGTTTTTACATTAACCCGTTTCTTCCGGGATGGAGAAGCTCGGGGGCCTACAAAGCTGAATTTATTAACAACTGAAAAACAGGGAAAGATATATGAGTCGGAAATTCAGCAACCTTCAGACAAATTTTATTTTGATAAATTTCTCCCTGGGAATACACAAGTGGGTCAAGGCTGTCCTGTAAAGTTATCATCTTCCATTACTGAGGCTAGAAGGGAAAAAGTGTTGAGCCTGGTGGGTGAAATTGTCCCTGCTAATCGCTCTTCTGTTACTTGCTGCAAGGATCAGTCTGTGTCATGGAAGTGCTCAAATAACCTATTAGGAAATGAGAAAAAGCTTCTTTCCCTTAAGAGGGAGGGTATGCAGTATCAAGATAGAAAAGTAATTAATCTTACTGATGAATCAATATTAAATGAAAAGCGGAGTGAAGAACTGATGACGCCTTGTTCTGCGAAGAAGAGTAAAGTAAGCGCAGAACACGATGCAGCACAACATATTAAAAATTCTATTGAGCATTCATCTTTTACAAAAGATTTTGAATCGCATGGCCTTCTTTCCACTATAAGTTCAATGAGAAGTGAAAGCTCACATAGATCTAGGTCATCTGATAGAGAAACTACTCAAAATGCTCAAGCTGGTTCAAAGCTGCTGCATAAAGACAATAGTGTAACATCGAGCCCTGTGCCTTCTGGTGATGAGGAAACGAGAGGTTCTCAATTTCTTGTTCAGGTTAAAGAGAAACTTAGTGCTTTGGAGTATAAAGAATTTGTAAATTTGATGAAGGCACTGAAGTCCAAAGCAATGAACATAAGTGAAGTTTTGCAATCAATTGCGAGATTGTTTTCTGGACCAGAGAGGCTTCCCCTTCTTAAAAGATTTAAGTATTTTATCCCAGCAAAGTATCATTCCATGTATGAGCACTATTTTCAAACCAATGGATCTTCTCAGAGTGAGATGCACAACAAGAAGGTCGGTTTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000723 GO:0000725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006282 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009892 GO:0009987 GO:0010569 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0032200 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0034645 GO:0036297 GO:0042592 GO:0043007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048229 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070716 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0099402 GO:1901360 GO:1901576 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD_2 Helicase_C_2

Protein Analysis

1035

Amino Acids

117.06

Weight (kDa)

8.88

Isoelectric Point (pI)

48.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD_2	PF06733	101 - 261	4.4e-54	DEAD_2
ARCH_RTEL1	PF23109	267 - 422	3.6e-41	RTEL1 helicase, ARCH domain
Helicase_C_2	PF13307	507 - 698	2.7e-49	Helicase C-terminal domain
HHD_RTEL1	PF23116	900 - 1017	9.3e-12	RTEL1, HHD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79950 AT1G79950 AT1G79950 AT1G79950 AT1G79950 AT1G79950 AT1G79950
fragaria_vesca	FvH4_6g31180 FvH4_6g31180 FvH4_6g31180 FvH4_6g31180
malus_domestica	MD17G1195000.v1.1
prunus_persica	Prupe.3G071000_v2.0.a1 Prupe.3G071000_v2.0.a1 Prupe.3G071000_v2.0.a1
pyrus_communis	pycom17g20090
rosa_chinensis	RchiOBHm_Chr2g0137871
rosa_laevigata	RLG00000019686
rosa_multiflora	Rmu_sc0002170.1_g000014
rosa_roxburghii	Rroxscaffold_2G00106700
rosa_rugosa	Rorug02G0347600
rosa_samantha	Rh2AG393900 Rh2BG401300 Rh2CG380600 Rh2DG416100
rosa_wichuraiana	Rw2G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	675, 1971, 1973
AciI	CCGC	6 cut(s)	310, 675, 764, 1381, 1973, 2545
AclWI	GGATC	6 cut(s)	319, 627, 1593, 1856, 2415, 3070
AcuI	CTGAAG	5 cut(s)	831, 954, 1751, 2226, 2933
AcvI	CACGTG	1 cut(s)	1854
AcyI	GRCGYC	1 cut(s)	2564
AfaI	GTAC	8 cut(s)	478, 508, 651, 840, 1188, 1542, 1889, 1952
AfeI	AGCGCT	1 cut(s)	903
AfiI	CCNNNNNNNGG	5 cut(s)	46, 1780, 2118, 2475, 2476
AflII	CTTAAG	1 cut(s)	2471
AflIII	ACRYGT	1 cut(s)	1993
AjiI	CACGTC	1 cut(s)	1994
AjnI	CCWGG	5 cut(s)	741, 973, 1264, 2272, 2355
Alw21I	GWGCWC	2 cut(s)	2432, 3045
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	6 cut(s)	319, 627, 1593, 1856, 2415, 3070
AlwNI	CAGNNNCTG	2 cut(s)	1360, 1748
Ama87I	CYCGRG	3 cut(s)	390, 615, 2166
Aor51HI	AGCGCT	1 cut(s)	903
AoxI	GGCC	6 cut(s)	48, 365, 593, 1441, 2171, 2671
ApeKI	GCWGC	4 cut(s)	2400, 2609, 2770, 2773
AseI	ATTAAT	3 cut(s)	699, 1041, 2511
AspLEI	GCGC	4 cut(s)	164, 904, 1973, 2597
AspS9I	GGNCC	5 cut(s)	206, 593, 1442, 2171, 2972
AsuC2I	CCSGG	3 cut(s)	616, 617, 2153
AsuHPI	GGTGA	4 cut(s)	248, 1987, 2375, 2828
AvaI	CYCGRG	3 cut(s)	390, 615, 2166
AvaII	GGWCC	2 cut(s)	206, 2972
AxyI	CCTNAGG	1 cut(s)	1866
BaeGI	GKGCMC	1 cut(s)	602
BanII	GRGCYC	1 cut(s)	2804
BarI	GAAGNNNNNNTAC	2 cut(s)	1047, 1079
BauI	CACGAG	1 cut(s)	1479
BbrPI	CACGTG	1 cut(s)	1854
BbsI	GAAGAC	2 cut(s)	146, 1950
Bbv12I	GWGCWC	2 cut(s)	2432, 3045
BbvCI	CCTCAGC	1 cut(s)	1741
BbvI	GCAGC	4 cut(s)	2387, 2621, 2757, 2760
BccI	CCATC	4 cut(s)	790, 1208, 1541, 2150
BceAI	ACGGC	4 cut(s)	580, 1751, 1758, 1931
BcgI	CGANNNNNNTGC	4 cut(s)	13, 47, 2788, 2822
BciT130I	CCWGG	5 cut(s)	743, 975, 1266, 2274, 2357
BciVI	GTATCC	2 cut(s)	956, 2079
BclI	TGATCA	1 cut(s)	1035
BcnI	CCSGG	3 cut(s)	616, 617, 2153
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	4 cut(s)	1236, 1680, 2334, 2721
BfmI	CTRYAG	1 cut(s)	466
BfoI	RGCGCY	1 cut(s)	905
BfrI	CTTAAG	1 cut(s)	2471
BfuI	GTATCC	2 cut(s)	956, 2079
BglI	GCCNNNNNGGC	2 cut(s)	170, 787
BglII	AGATCT	2 cut(s)	104, 2717
BisI	GCNGC	5 cut(s)	765, 2401, 2610, 2771, 2774
BlpI	GCTNAGC	1 cut(s)	1725
BlsI	GCNGC	5 cut(s)	766, 2402, 2611, 2772, 2775
BmcAI	AGTACT	1 cut(s)	1889
Bme1390I	CCNGG	8 cut(s)	616, 617, 743, 975, 1266, 2153, 2274, 2357
Bme18I	GGWCC	2 cut(s)	206, 2972
BmeT110I	CYCGRG	3 cut(s)	390, 615, 2166
BmgBI	CACGTC	1 cut(s)	1994
BmgT120I	GGNCC	5 cut(s)	206, 593, 1442, 2171, 2972
BmiI	GGNNCC	1 cut(s)	2172
BmrFI	CCNGG	8 cut(s)	616, 617, 743, 975, 1266, 2153, 2274, 2357
BmrI	ACTGGG	3 cut(s)	147, 256, 262
BmsI	GCATC	6 cut(s)	33, 751, 1973, 2014, 2596, 3069
BmuI	ACTGGG	3 cut(s)	147, 256, 262
BpiI	GAAGAC	2 cut(s)	146, 1950
BplI	GAGNNNNNCTC	4 cut(s)	1271, 1303, 2821, 2853
BpmI	CTGGAG	2 cut(s)	996, 1446
Bpu10I	CCTNAGC	1 cut(s)	1741
Bpu1102I	GCTNAGC	1 cut(s)	1725
BpuEI	CTTGAG	2 cut(s)	938, 2739
BpuMI	CCSGG	3 cut(s)	616, 617, 2153
Bsa29I	ATCGAT	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	1854
BsaHI	GRCGYC	1 cut(s)	2564
BsaJI	CCNNGG	5 cut(s)	615, 951, 1774, 2272, 2273
BsaXI	ACNNNNNCTCC	2 cut(s)	1318, 1348
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 1780, 2118, 2475, 2476
Bse118I	RCCGGY	1 cut(s)	1110
Bse1I	ACTGG	9 cut(s)	136, 142, 208, 262, 268, 583, 1840, 1942, 1952
Bse21I	CCTNAGG	1 cut(s)	1866
Bse3DI	GCAATG	4 cut(s)	1108, 1168, 1281, 2931
BseBI	CCWGG	5 cut(s)	743, 975, 1266, 2274, 2357
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	5 cut(s)	615, 951, 1774, 2272, 2273
BseGI	GGATG	7 cut(s)	286, 856, 1131, 1261, 1303, 2128, 2161
BseLI	CCNNNNNNNGG	5 cut(s)	46, 1780, 2118, 2475, 2476
BseMI	GCAATG	4 cut(s)	1108, 1168, 1281, 2931
BseMII	CTCAG	4 cut(s)	1258, 1755, 2319, 3083
BseNI	ACTGG	9 cut(s)	136, 142, 208, 262, 268, 583, 1840, 1942, 1952
BseRI	GAGGAG	1 cut(s)	1456
BseSI	GKGCMC	1 cut(s)	602
BseXI	GCAGC	4 cut(s)	2387, 2621, 2757, 2760
BseYI	CCCAGC	1 cut(s)	3016
BsgI	GTGCAG	1 cut(s)	777
Bsh1236I	CGCG	3 cut(s)	675, 1971, 1973
BshFI	GGCC	6 cut(s)	50, 367, 595, 1443, 2173, 2673
BshVI	ATCGAT	1 cut(s)	27
BsiHKAI	GWGCWC	2 cut(s)	2432, 3045
BsiHKCI	CYCGRG	3 cut(s)	390, 615, 2166
BsiSI	CCGG	5 cut(s)	328, 616, 1111, 2002, 2152
BslFI	GGGAC	5 cut(s)	244, 250, 256, 292, 2357
BslI	CCNNNNNNNGG	5 cut(s)	46, 1780, 2118, 2475, 2476
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	5 cut(s)	244, 250, 256, 292, 2357
BsmI	GAATGC	4 cut(s)	405, 454, 1096, 2638
BsnI	GGCC	6 cut(s)	50, 367, 595, 1443, 2173, 2673
BsoBI	CYCGRG	3 cut(s)	390, 615, 2166
Bsp1286I	GDGCHC	4 cut(s)	602, 2432, 2804, 3045
Bsp1407I	TGTACA	2 cut(s)	838, 1186
Bsp1720I	GCTNAGC	1 cut(s)	1725
BspACI	CCGC	6 cut(s)	310, 675, 764, 1381, 1973, 2545
BspANI	GGCC	6 cut(s)	50, 367, 595, 1443, 2173, 2673
BspCNI	CTCAG	4 cut(s)	1257, 1754, 2320, 3082
BspDI	ATCGAT	1 cut(s)	27
BspFNI	CGCG	3 cut(s)	675, 1971, 1973
BspHI	TCATGA	2 cut(s)	409, 2011
BspLI	GGNNCC	1 cut(s)	2172
BspPI	GGATC	6 cut(s)	319, 627, 1593, 1856, 2415, 3070
BspQI	GCTCTTC	3 cut(s)	176, 1813, 2392
BspTI	CTTAAG	1 cut(s)	2471
BsrDI	GCAATG	4 cut(s)	1108, 1168, 1281, 2931
BsrFI	RCCGGY	1 cut(s)	1110
BsrGI	TGTACA	2 cut(s)	838, 1186
BsrI	ACTGG	9 cut(s)	136, 142, 208, 262, 268, 583, 1840, 1942, 1952
BssAI	RCCGGY	1 cut(s)	1110
BssECI	CCNNGG	5 cut(s)	615, 951, 1774, 2272, 2273
BssNI	GRCGYC	1 cut(s)	2564
BssSI	CACGAG	1 cut(s)	1479
BssT1I	CCWWGG	1 cut(s)	951
Bst2BI	CACGAG	1 cut(s)	1479
Bst2UI	CCWGG	5 cut(s)	743, 975, 1266, 2274, 2357
Bst4CI	ACNGT	3 cut(s)	117, 713, 1027
Bst6I	CTCTTC	4 cut(s)	176, 1813, 2392, 2576
BstACI	GRCGYC	1 cut(s)	2564
BstAFI	CTTAAG	1 cut(s)	2471
BstAPI	GCANNNNNTGC	2 cut(s)	1107, 1599
BstAUI	TGTACA	2 cut(s)	838, 1186
BstBAI	YACGTR	1 cut(s)	1854
BstC8I	GCNNGC	4 cut(s)	62, 802, 1112, 1441
BstDSI	CCRYGG	1 cut(s)	1774
BstF5I	GGATG	7 cut(s)	286, 856, 1131, 1261, 1303, 2128, 2161
BstFNI	CGCG	3 cut(s)	675, 1971, 1973
BstH2I	RGCGCY	1 cut(s)	905
BstHHI	GCGC	4 cut(s)	164, 904, 1973, 2597
BstMAI	GTCTC	1 cut(s)	96
BstNI	CCWGG	5 cut(s)	743, 975, 1266, 2274, 2357
BstNSI	RCATGY	1 cut(s)	804
BstSCI	CCNGG	8 cut(s)	614, 615, 741, 973, 1264, 2151, 2272, 2355
BstSFI	CTRYAG	1 cut(s)	466
BstSLI	GKGCMC	1 cut(s)	602
BstUI	CGCG	3 cut(s)	675, 1971, 1973
BstV1I	GCAGC	4 cut(s)	2387, 2621, 2757, 2760
BstV2I	GAAGAC	2 cut(s)	146, 1950
BstX2I	RGATCY	5 cut(s)	104, 324, 619, 2717, 3062
BstXI	CCANNNNNNTGG	1 cut(s)	958
BstYI	RGATCY	5 cut(s)	104, 324, 619, 2717, 3062
Bsu15I	ATCGAT	1 cut(s)	27
Bsu36I	CCTNAGG	1 cut(s)	1866
BsuI	GTATCC	2 cut(s)	956, 2079
BsuRI	GGCC	6 cut(s)	50, 367, 595, 1443, 2173, 2673
BsuTUI	ATCGAT	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	1774
BtrI	CACGTC	1 cut(s)	1994
BtsCI	GGATG	7 cut(s)	286, 856, 1131, 1261, 1303, 2128, 2161
BtsIMutI	CAGTG	2 cut(s)	113, 2909
Cac8I	GCNNGC	4 cut(s)	62, 802, 1112, 1441
CaiI	CAGNNNCTG	2 cut(s)	1360, 1748
CciI	TCATGA	2 cut(s)	409, 2011
CfoI	GCGC	4 cut(s)	164, 904, 1973, 2597
Cfr10I	RCCGGY	1 cut(s)	1110
Cfr13I	GGNCC	5 cut(s)	206, 593, 1442, 2171, 2972
Cfr9I	CCCGGG	1 cut(s)	615
ClaI	ATCGAT	1 cut(s)	27
CseI	GACGC	2 cut(s)	294, 2572
Csp6I	GTAC	8 cut(s)	477, 507, 650, 839, 1187, 1541, 1888, 1951
CviQI	GTAC	8 cut(s)	477, 507, 650, 839, 1187, 1541, 1888, 1951
DraI	TTTAAA	1 cut(s)	1221
Eam1104I	CTCTTC	4 cut(s)	176, 1813, 2392, 2576
EarI	CTCTTC	4 cut(s)	176, 1813, 2392, 2576
Eco130I	CCWWGG	1 cut(s)	951
Eco147I	AGGCCT	1 cut(s)	50
Eco24I	GRGCYC	1 cut(s)	2804
Eco47I	GGWCC	2 cut(s)	206, 2972
Eco47III	AGCGCT	1 cut(s)	903
Eco57I	CTGAAG	5 cut(s)	831, 954, 1751, 2226, 2933
Eco72I	CACGTG	1 cut(s)	1854
Eco81I	CCTNAGG	1 cut(s)	1866
Eco88I	CYCGRG	3 cut(s)	390, 615, 2166
EcoO109I	RGGNCCY	1 cut(s)	2171
EcoRI	GAATTC	1 cut(s)	1283
EcoRII	CCWGG	5 cut(s)	741, 973, 1264, 2272, 2355
EcoT14I	CCWWGG	1 cut(s)	951
EcoT22I	ATGCAT	3 cut(s)	407, 806, 1595
EcoT38I	GRGCYC	1 cut(s)	2804
ErhI	CCWWGG	1 cut(s)	951
FalI	AAGNNNNNCTT	4 cut(s)	343, 375, 2850, 2882
FaqI	GGGAC	5 cut(s)	244, 250, 256, 292, 2357
FauI	CCCGC	2 cut(s)	317, 668
FauNDI	CATATG	1 cut(s)	752
FbaI	TGATCA	1 cut(s)	1035
Fnu4HI	GCNGC	5 cut(s)	765, 2401, 2610, 2771, 2774
FokI	GGATG	7 cut(s)	273, 863, 1118, 1248, 1310, 2135, 2168
FriOI	GRGCYC	1 cut(s)	2804
Fsp4HI	GCNGC	5 cut(s)	765, 2401, 2610, 2771, 2774
FspBI	CTAG	4 cut(s)	1236, 1680, 2334, 2721
GlaI	GCGC	4 cut(s)	163, 903, 1972, 2596
GluI	GCNGC	5 cut(s)	765, 2401, 2610, 2771, 2774
GsaI	CCCAGC	1 cut(s)	3020
GsuI	CTGGAG	2 cut(s)	996, 1446
HaeII	RGCGCY	1 cut(s)	905
HaeIII	GGCC	6 cut(s)	50, 367, 595, 1443, 2173, 2673
HapII	CCGG	5 cut(s)	328, 616, 1111, 2002, 2152
HgaI	GACGC	2 cut(s)	294, 2572
HhaI	GCGC	4 cut(s)	164, 904, 1973, 2597
Hin1I	GRCGYC	1 cut(s)	2564
Hin6I	GCGC	4 cut(s)	162, 902, 1971, 2595
HinP1I	GCGC	4 cut(s)	162, 902, 1971, 2595
HindIII	AAGCTT	2 cut(s)	914, 2459
HpaII	CCGG	5 cut(s)	328, 616, 1111, 2002, 2152
HphI	GGTGA	4 cut(s)	248, 1987, 2375, 2828
Hpy166II	GTNNAC	3 cut(s)	70, 425, 1857
Hpy8I	GTNNAC	3 cut(s)	70, 425, 1857
HpyCH4III	ACNGT	3 cut(s)	117, 713, 1027
HpyCH4IV	ACGT	3 cut(s)	1853, 1882, 1993
HpySE526I	ACGT	3 cut(s)	1853, 1882, 1993
Hsp92I	GRCGYC	1 cut(s)	2564
HspAI	GCGC	4 cut(s)	162, 902, 1971, 2595
KroI	GCCGGC	1 cut(s)	1110
KroNI	GCCGGC	1 cut(s)	1112
Ksp22I	TGATCA	1 cut(s)	1035
LguI	GCTCTTC	3 cut(s)	176, 1813, 2392
LmnI	GCTCC	3 cut(s)	977, 1357, 2021
Lsp1109I	GCAGC	4 cut(s)	2387, 2621, 2757, 2760
LweI	GCATC	6 cut(s)	33, 751, 1973, 2014, 2596, 3069
MaeI	CTAG	4 cut(s)	1236, 1680, 2334, 2721
MaeII	ACGT	3 cut(s)	1853, 1882, 1993
MaeIII	GTNAC	7 cut(s)	455, 1127, 1481, 1831, 2105, 2392, 2791
MfeI	CAATTG	2 cut(s)	1707, 2952
MflI	RGATCY	5 cut(s)	104, 324, 619, 2717, 3062
MhlI	GDGCHC	4 cut(s)	602, 2432, 2804, 3045
MlyI	GAGTC	5 cut(s)	133, 232, 1437, 1478, 2231
MmeI	TCCRAC	7 cut(s)	99, 121, 152, 1275, 1365, 1969, 2205
Mph1103I	ATGCAT	3 cut(s)	407, 806, 1595
MroNI	GCCGGC	1 cut(s)	1110
MslI	CAYNNNNRTG	3 cut(s)	2010, 2016, 2425
MspA1I	CMGCKG	2 cut(s)	1248, 1439
MspCI	CTTAAG	1 cut(s)	2471
MspI	CCGG	5 cut(s)	328, 616, 1111, 2002, 2152
MspR9I	CCNGG	8 cut(s)	616, 617, 743, 975, 1266, 2153, 2274, 2357
MunI	CAATTG	2 cut(s)	1707, 2952
Mva1269I	GAATGC	4 cut(s)	405, 454, 1096, 2638
MvaI	CCWGG	5 cut(s)	743, 975, 1266, 2274, 2357
MvnI	CGCG	3 cut(s)	675, 1971, 1973
NaeI	GCCGGC	1 cut(s)	1112
NciI	CCSGG	3 cut(s)	616, 617, 2153
NdeI	CATATG	1 cut(s)	752
NgoMIV	GCCGGC	1 cut(s)	1110
NlaIV	GGNNCC	1 cut(s)	2172
NmuCI	GTSAC	3 cut(s)	455, 1127, 1481
NsiI	ATGCAT	3 cut(s)	407, 806, 1595
NspI	RCATGY	1 cut(s)	804
PaeI	GCATGC	1 cut(s)	804
PaeR7I	CTCGAG	1 cut(s)	390
PagI	TCATGA	2 cut(s)	409, 2011
PasI	CCCWGGG	1 cut(s)	2273
PceI	AGGCCT	1 cut(s)	50
PciSI	GCTCTTC	3 cut(s)	176, 1813, 2392
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 1879
PctI	GAATGC	4 cut(s)	405, 454, 1096, 2638
PdiI	GCCGGC	1 cut(s)	1112
PfeI	GAWTC	6 cut(s)	854, 892, 1343, 1978, 2525, 2663
PfoI	TCCNGGA	2 cut(s)	1264, 2151
PkrI	GCNGC	5 cut(s)	766, 2402, 2611, 2772, 2775
PleI	GAGTC	5 cut(s)	132, 231, 1436, 1478, 2230
PmaCI	CACGTG	1 cut(s)	1854
PmlI	CACGTG	1 cut(s)	1854
PpsI	GAGTC	5 cut(s)	132, 231, 1436, 1478, 2230
Ppu21I	YACGTR	1 cut(s)	1854
PshBI	ATTAAT	3 cut(s)	699, 1041, 2511
Psp6I	CCWGG	5 cut(s)	741, 973, 1264, 2272, 2355
PspCI	CACGTG	1 cut(s)	1854
PspFI	CCCAGC	1 cut(s)	3016
PspGI	CCWGG	5 cut(s)	741, 973, 1264, 2272, 2355
PspN4I	GGNNCC	1 cut(s)	2172
PspPI	GGNCC	5 cut(s)	206, 593, 1442, 2171, 2972
PsrI	GAACNNNNNNTAC	4 cut(s)	1179, 1211, 1914, 1946
PstNI	CAGNNNCTG	2 cut(s)	1360, 1748
PsuI	RGATCY	5 cut(s)	104, 324, 619, 2717, 3062
PvuII	CAGCTG	2 cut(s)	1248, 1439
RsaI	GTAC	8 cut(s)	478, 508, 651, 840, 1188, 1542, 1889, 1952
RsaNI	GTAC	8 cut(s)	477, 507, 650, 839, 1187, 1541, 1888, 1951
RseI	CAYNNNNRTG	3 cut(s)	2010, 2016, 2425
SapI	GCTCTTC	3 cut(s)	176, 1813, 2392
SatI	GCNGC	5 cut(s)	765, 2401, 2610, 2771, 2774
Sau96I	GGNCC	5 cut(s)	206, 593, 1442, 2171, 2972
ScaI	AGTACT	1 cut(s)	1889
SchI	GAGTC	5 cut(s)	133, 232, 1437, 1478, 2231
ScrFI	CCNGG	8 cut(s)	616, 617, 743, 975, 1266, 2153, 2274, 2357
SduI	GDGCHC	4 cut(s)	602, 2432, 2804, 3045
SfaNI	GCATC	6 cut(s)	33, 751, 1973, 2014, 2596, 3069
SfcI	CTRYAG	1 cut(s)	466
Sfr274I	CTCGAG	1 cut(s)	390
SinI	GGWCC	2 cut(s)	206, 2972
SlaI	CTCGAG	1 cut(s)	390
SmaI	CCCGGG	1 cut(s)	617
SmiMI	CAYNNNNRTG	3 cut(s)	2010, 2016, 2425
SmlI	CTYRAG	4 cut(s)	390, 917, 2471, 2754
SmoI	CTYRAG	4 cut(s)	390, 917, 2471, 2754
SphI	GCATGC	1 cut(s)	804
SseBI	AGGCCT	1 cut(s)	50
SsiI	CCGC	6 cut(s)	310, 675, 764, 1381, 1973, 2545
SspI	AATATT	2 cut(s)	1758, 2532
SspMI	CTAG	4 cut(s)	1236, 1680, 2334, 2721
StuI	AGGCCT	1 cut(s)	50
StyD4I	CCNGG	8 cut(s)	614, 615, 741, 973, 1264, 2151, 2272, 2355
StyI	CCWWGG	1 cut(s)	951
TaaI	ACNGT	3 cut(s)	117, 713, 1027
TaiI	ACGT	3 cut(s)	1856, 1885, 1996
TaqI	TCGA	7 cut(s)	27, 33, 45, 391, 1487, 1534, 2798
TatI	WGTACW	3 cut(s)	838, 1186, 1887
TauI	GCSGC	1 cut(s)	767
TfiI	GAWTC	6 cut(s)	854, 892, 1343, 1978, 2525, 2663
TscAI	CASTG	2 cut(s)	120, 2916
TseFI	GTSAC	3 cut(s)	455, 1127, 1481
TseI	GCWGC	4 cut(s)	2400, 2609, 2770, 2773
Tsp45I	GTSAC	3 cut(s)	455, 1127, 1481
TspMI	CCCGGG	1 cut(s)	615
TspRI	CASTG	2 cut(s)	120, 2916
Vha464I	CTTAAG	1 cut(s)	2471
VpaK11BI	GGWCC	2 cut(s)	206, 2972
VspI	ATTAAT	3 cut(s)	699, 1041, 2511
XceI	RCATGY	1 cut(s)	804
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1851
XhoI	CTCGAG	1 cut(s)	390
XmaI	CCCGGG	1 cut(s)	615
XspI	CTAG	4 cut(s)	1236, 1680, 2334, 2721
ZrmI	AGTACT	1 cut(s)	1889
Zsp2I	ATGCAT	3 cut(s)	407, 806, 1595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.