Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0006710

Physical Location & Seq

Genomic Coordinates Forward (+)

58962698 .. 58975527

Gene Structure 12830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG393900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3114 bp

ATGCCAACTTACAATATCAGAGGCATCGATGTCGAATTCCCATTCGAGGCCTACGATTGCCAGCTCGTTTACATGGAGAAAGTCATTCAGTCTCTCCAACAAAGATCTAACGCACTGTTGGAGAGTCCGACTGGAACTGGGAAAACCCTTTGTCTTCTCTGCGCCACATTGGCTTGGAGGAAGAGCTTGGGGGTTTTCTCAACTGGTCCGAATGTGAAGATGAGTCAGATCAATGGTGATAAATCAGGTGCTTCATTGTCCCAGTCCCAGTCCCAGACCAAAGATCATCCTACCATAATATATGCGTCCCGCACTCACAGCCAGATCCGGCAAGTAATTCAAGAGTTGAAAAGAAGCTCTTACAGGCCGAAAATGGTAGTATTGGGTTCTCGAGAGCAACTATGCATTCATGATGAAGTGAGTTCACTTCATGGAAAAGCACAGACGAATGCCTGTCACTTCCTCTGTAGAAAGCGTACAAAGCGTTATTGCAAACATTATTCTCGTACTGCTGATTACTTGAAGAATAATTCTCATCTTGGAGATGAACCTATTGACATTGAGGATTTGGTCAATACTGGAAGAAAGTCTGGGCCGTGCCCTTATTACTTATCCCGGGATCTTCATAAGGTTGTTGATATATTATTTGTACCTTACAACTATCTTATTGATCGCGGGTTTAGAAAATCACTACAAATTAATTGGAAAAACAGTATTCTCATATTTGATGAAGCTCACAACCTGGAAAGCATATGTGCAGATGCGGCTTCTTTTGACTTGCCATCTTGGCTTCTTACAGCATGCATTTCTGAAGCGAAAAATTGTATTGACCTTTCTGTACAAAGAAGGGATGAATCAACCGATAAATCAAAAAATCCAGATAACTTTGCGATTCTTAGAGCGCTTCTTTTGAAGCTTGAGAAGCGAATTTCTGAAGTGCCTATTCAATCCAAGGAATTGGGATACACTAAGCCTGGAGCGTATATCTATGAACTCCTTGCTGATCTAAACATCACATATGATACTGTTCCTATGATCATTAATATAATTGAGGAAGCTACTCTACTTATTGAGGAAGATAACCAGCAGAATGCTAAACGCAATGTCTGCCGGCTGGAAAGCATTAGTGACATCCTGAATACAATTTTCAGAGATATAAGCAATGCAAAATCCTATCGTGTTCATGTACAGGAAGTTCAAGGAAGTGCAACAGATGGTTTAAAGGGTAAGTCTTCTAGGACACTCAGCTGGTGGTGCTTTCATCCTGGAATTGCAATGGAGGAATTCTCCAAGTTGGATGTAGGCTCTATTATATTGACATCTGGCACACTATCTCCCTTAGAATCATTTGCACAGGAGCTGAAAATAGAGTTTCCTGTGCGGTTGGAAAATCCTCATGTTATTACCCCTAATCAGATATGGGCTGGAGTCGTTCCAGCTGGCCCTTCGGGTTGCTCTTTCAACTCCTCTTATAGAACTCGTGACTCGATTGAGTATAAGCAGGAACTTGGAAATGCTATTGTCAATTTTGCTCGAATTGTACCTGATGGATTGCTTGTATTCTTTCCTTCTTACTACCTTTTGGATCAATGCATTGGGTGCTGGAAGAATATGAGCCATGCCAATTCAACTACAATATGGGAAAGAATTTCCAAACACAAGAAACCTGTTGTAGAACCTAGACAATCTTCATTATTTCTTTCATCAATTGAGGACTATATGGCTAAGCTGAAGGACACCTCAGCTTCTGGTGCAATATTTTTTGCCGTTTGCCGTGGTAAGGTAAGTGAAGGATTAGATTTTGCCGATCACGCTGGAAGAGCTGTAATTGTTACTGGTATGCCATTTGCCACGTGGACTGATCCTAAGGTTCGTCTGAAACGTGAGTACTTAGATGAACAGGCACATTCTCAACGGCAAGTATGTAAGGTGCAGGTTCTGACTGGCGAAGACTGGTACAATCAACAAGCATCACGCGCGGTGAATCAGGCTGTTGGACGTGTAATCCGGCATCGTCATGATTATGGAGCAATTATTTTTCTTGATGAAAGGTTTGCACAGCCAAATCGTCAATCTCAAATATCTCTCTGGATACGACCTCATATCAAGTGTTACTCCAAATTTGGGGATGTGGTTTTTACATTAACCCGTTTCTTCCGGGATGGAGAAGCTCGGGGTCCTACAAAGCTGAATTTATTAACAACTGAAAAACAGGGAAAGATATATGAGTCGGAAATTCAGCAACCTTCAGACAAATTTTATTTTGATAAATTTCTCCCTGGGAATACACAAGTGGGTCAAGGATGTCCTGTAAAGTTATCATCTTCCATTACTGAGGCTAGAAGGGAAAAAGTGTTGAGCCTGGTGGGTGAAATTGTCCCTGCAAATCGCTCTTCTGTTACTTGCTGCAAGGATCAGTCTGTGTCATGGAAGTGCTCAAATAACCTATTAGGAAATGAGAAAAAGCTTCTTTCCCTTAAGAGGGAGGGTATGCAGTATCAAGATAGAAATGTAATTAATCTTACTGATGAATCAATATTAAATGAAAAGCGGAGTGAAGAACTGATGACGCCTTGTTCTGCGAAGAAGAGTAAAGTAAGCGCAGAACACGATGCAGCACAACATATTAAAAATTCTATTGAGCATTCATCTCTTACAAAAGATTTTGAATCGCATGGCCTTCTTTCCACTATAAGTTCAATGAGAAGTGAAAGCTCACATAGATCTAGGTCATCTGATAGAGAAACTACTCAAAATGCTCAAGCTGGTTCAAAGCTGCTGCATAAAGACAATAGTGTAACATCGAGTCCTGTGCCTTCTGGTGATGAGGAAACGAGAGGTTCTCAATTTCTTGTTCAGGTTAAAGAGAAACTTAGTGCTTTGGAGTATAAAGAATTTGTAAATTTGATGAAGGCACTGAAGTCCAAAGCAATGAACATAAGTGAAGTTTTGCAATCAATTGCGAGATTGTTTTCTGGACCAGAGAGGCTTCCCCTTCTTAAAAGATTTAAGTATTTTATCCCAGCAAAGTATCATTCCATGTATGAGCACTATTTTCAAACCAATGGATCTTCTCAGAGTGAGATGCACAACAAGAAGGCCGGTTTTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000018 GO:0000723 GO:0000725 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006282 GO:0006298 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009555 GO:0009892 GO:0009987 GO:0010569 GO:0010605 GO:0016043 GO:0019219 GO:0019222 GO:0022622 GO:0031323 GO:0031324 GO:0032200 GO:0032501 GO:0032502 GO:0033554 GO:0034641 GO:0034645 GO:0036297 GO:0042592 GO:0043007 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043570 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044424 GO:0044444 GO:0044464 GO:0045005 GO:0045910 GO:0045934 GO:0046483 GO:0048229 GO:0048364 GO:0048519 GO:0048523 GO:0048583 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051171 GO:0051172 GO:0051276 GO:0051716 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070716 GO:0071704 GO:0071840 GO:0080090 GO:0080134 GO:0080135 GO:0090304 GO:0099402 GO:1901360 GO:1901576 GO:2000779 GO:2001020

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD_2 Helicase_C_2

Protein Analysis

1037

Amino Acids

117.25

Weight (kDa)

8.85

Isoelectric Point (pI)

49.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD_2	PF06733	101 - 261	4.4e-54	DEAD_2
ARCH_RTEL1	PF23109	267 - 422	4.4e-41	RTEL1 helicase, ARCH domain
Helicase_C_2	PF13307	507 - 700	3.7e-49	Helicase C-terminal domain
HHD_RTEL1	PF23116	902 - 1019	3.2e-12	RTEL1, HHD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006710)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G79950 AT1G79950 AT1G79950 AT1G79950 AT1G79950 AT1G79950 AT1G79950
fragaria_vesca	FvH4_6g31180 FvH4_6g31180 FvH4_6g31180 FvH4_6g31180
malus_domestica	MD17G1195000.v1.1
prunus_persica	Prupe.3G071000_v2.0.a1 Prupe.3G071000_v2.0.a1 Prupe.3G071000_v2.0.a1
pyrus_communis	pycom17g20090
rosa_chinensis	RchiOBHm_Chr2g0137871
rosa_laevigata	RLG00000019686
rosa_multiflora	Rmu_sc0002170.1_g000014
rosa_roxburghii	Rroxscaffold_2G00106700
rosa_rugosa	Rorug02G0347600
rosa_samantha	Rh2AG393900 Rh2BG401300 Rh2CG380600 Rh2DG416100
rosa_wichuraiana	Rw2G032240

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1924
AccII	CGCG	3 cut(s)	675, 1977, 1979
AciI	CCGC	6 cut(s)	310, 675, 764, 1381, 1979, 2551
AclWI	GGATC	6 cut(s)	319, 627, 1593, 1856, 2421, 3076
AcuI	CTGAAG	5 cut(s)	831, 954, 1751, 2232, 2939
AcvI	CACGTG	1 cut(s)	1854
AcyI	GRCGYC	1 cut(s)	2570
AfaI	GTAC	8 cut(s)	478, 508, 651, 840, 1188, 1542, 1889, 1958
AfeI	AGCGCT	1 cut(s)	903
AfiI	CCNNNNNNNGG	5 cut(s)	46, 1780, 2124, 2481, 2482
AflII	CTTAAG	1 cut(s)	2477
AflIII	ACRYGT	1 cut(s)	1999
AjiI	CACGTC	1 cut(s)	2000
AjnI	CCWGG	5 cut(s)	741, 973, 1264, 2278, 2361
Alw21I	GWGCWC	2 cut(s)	2438, 3051
Alw26I	GTCTC	1 cut(s)	96
AlwI	GGATC	6 cut(s)	319, 627, 1593, 1856, 2421, 3076
AlwNI	CAGNNNCTG	3 cut(s)	1360, 1748, 1939
Ama87I	CYCGRG	3 cut(s)	390, 615, 2172
Aor51HI	AGCGCT	1 cut(s)	903
AoxI	GGCC	6 cut(s)	48, 365, 593, 1441, 2677, 3099
ApeKI	GCWGC	4 cut(s)	2406, 2615, 2776, 2779
AseI	ATTAAT	3 cut(s)	699, 1041, 2517
AspLEI	GCGC	4 cut(s)	164, 904, 1979, 2603
AspS9I	GGNCC	5 cut(s)	206, 593, 1442, 2177, 2978
AsuC2I	CCSGG	3 cut(s)	616, 617, 2159
AsuHPI	GGTGA	4 cut(s)	248, 1993, 2381, 2834
AvaI	CYCGRG	3 cut(s)	390, 615, 2172
AvaII	GGWCC	3 cut(s)	206, 2177, 2978
AxyI	CCTNAGG	1 cut(s)	1866
BaeGI	GKGCMC	1 cut(s)	602
BarI	GAAGNNNNNNTAC	2 cut(s)	1047, 1079
BauI	CACGAG	1 cut(s)	1479
BbrPI	CACGTG	1 cut(s)	1854
BbsI	GAAGAC	3 cut(s)	146, 1224, 1956
Bbv12I	GWGCWC	2 cut(s)	2438, 3051
BbvCI	CCTCAGC	1 cut(s)	1741
BbvI	GCAGC	4 cut(s)	2393, 2627, 2763, 2766
BccI	CCATC	4 cut(s)	790, 1208, 1541, 2156
BceAI	ACGGC	4 cut(s)	580, 1751, 1758, 1931
BcgI	CGANNNNNNTGC	4 cut(s)	13, 47, 2794, 2828
BciT130I	CCWGG	5 cut(s)	743, 975, 1266, 2280, 2363
BciVI	GTATCC	2 cut(s)	956, 2085
BclI	TGATCA	1 cut(s)	1035
BcnI	CCSGG	3 cut(s)	616, 617, 2159
BcoDI	GTCTC	1 cut(s)	96
BfaI	CTAG	4 cut(s)	1236, 1680, 2340, 2727
BfmI	CTRYAG	1 cut(s)	466
BfoI	RGCGCY	1 cut(s)	905
BfrI	CTTAAG	1 cut(s)	2477
BfuAI	ACCTGC	1 cut(s)	1924
BfuI	GTATCC	2 cut(s)	956, 2085
BglI	GCCNNNNNGGC	2 cut(s)	170, 787
BglII	AGATCT	2 cut(s)	104, 2723
BisI	GCNGC	5 cut(s)	765, 2407, 2616, 2777, 2780
BlpI	GCTNAGC	1 cut(s)	1725
BlsI	GCNGC	5 cut(s)	766, 2408, 2617, 2778, 2781
BmcAI	AGTACT	1 cut(s)	1889
Bme1390I	CCNGG	8 cut(s)	616, 617, 743, 975, 1266, 2159, 2280, 2363
Bme18I	GGWCC	3 cut(s)	206, 2177, 2978
BmeT110I	CYCGRG	3 cut(s)	390, 615, 2172
BmgBI	CACGTC	1 cut(s)	2000
BmgT120I	GGNCC	5 cut(s)	206, 593, 1442, 2177, 2978
BmiI	GGNNCC	1 cut(s)	2178
BmrFI	CCNGG	8 cut(s)	616, 617, 743, 975, 1266, 2159, 2280, 2363
BmrI	ACTGGG	3 cut(s)	147, 256, 262
BmsI	GCATC	6 cut(s)	33, 751, 1979, 2020, 2602, 3075
BmuI	ACTGGG	3 cut(s)	147, 256, 262
BpiI	GAAGAC	3 cut(s)	146, 1224, 1956
BplI	GAGNNNNNCTC	4 cut(s)	1271, 1303, 2827, 2859
BpmI	CTGGAG	2 cut(s)	996, 1446
Bpu10I	CCTNAGC	1 cut(s)	1741
Bpu1102I	GCTNAGC	1 cut(s)	1725
BpuEI	CTTGAG	2 cut(s)	938, 2745
BpuMI	CCSGG	3 cut(s)	616, 617, 2159
Bsa29I	ATCGAT	1 cut(s)	27
BsaAI	YACGTR	1 cut(s)	1854
BsaHI	GRCGYC	1 cut(s)	2570
BsaJI	CCNNGG	5 cut(s)	615, 951, 1774, 2278, 2279
BsaXI	ACNNNNNCTCC	2 cut(s)	1318, 1348
Bsc4I	CCNNNNNNNGG	5 cut(s)	46, 1780, 2124, 2481, 2482
Bse118I	RCCGGY	2 cut(s)	1110, 3101
Bse1I	ACTGG	9 cut(s)	136, 142, 208, 262, 268, 583, 1840, 1948, 1958
Bse21I	CCTNAGG	1 cut(s)	1866
Bse3DI	GCAATG	4 cut(s)	1108, 1168, 1281, 2937
BseBI	CCWGG	5 cut(s)	743, 975, 1266, 2280, 2363
BseCI	ATCGAT	1 cut(s)	27
BseDI	CCNNGG	5 cut(s)	615, 951, 1774, 2278, 2279
BseGI	GGATG	8 cut(s)	286, 856, 1131, 1261, 1303, 2134, 2167, 2309
BseLI	CCNNNNNNNGG	5 cut(s)	46, 1780, 2124, 2481, 2482
BseMI	GCAATG	4 cut(s)	1108, 1168, 1281, 2937
BseMII	CTCAG	4 cut(s)	1258, 1755, 2325, 3089
BseNI	ACTGG	9 cut(s)	136, 142, 208, 262, 268, 583, 1840, 1948, 1958
BseRI	GAGGAG	1 cut(s)	1456
BseSI	GKGCMC	1 cut(s)	602
BseXI	GCAGC	4 cut(s)	2393, 2627, 2763, 2766
BseYI	CCCAGC	1 cut(s)	3022
BsgI	GTGCAG	2 cut(s)	777, 1952
Bsh1236I	CGCG	3 cut(s)	675, 1977, 1979
BshFI	GGCC	6 cut(s)	50, 367, 595, 1443, 2679, 3101
BshVI	ATCGAT	1 cut(s)	27
BsiHKAI	GWGCWC	2 cut(s)	2438, 3051
BsiHKCI	CYCGRG	3 cut(s)	390, 615, 2172
BsiSI	CCGG	6 cut(s)	328, 616, 1111, 2008, 2158, 3102
BslFI	GGGAC	5 cut(s)	244, 250, 256, 292, 2363
BslI	CCNNNNNNNGG	5 cut(s)	46, 1780, 2124, 2481, 2482
BsmAI	GTCTC	1 cut(s)	96
BsmFI	GGGAC	5 cut(s)	244, 250, 256, 292, 2363
BsmI	GAATGC	4 cut(s)	405, 454, 1096, 2644
BsnI	GGCC	6 cut(s)	50, 367, 595, 1443, 2679, 3101
BsoBI	CYCGRG	3 cut(s)	390, 615, 2172
Bsp1286I	GDGCHC	3 cut(s)	602, 2438, 3051
Bsp1407I	TGTACA	2 cut(s)	838, 1186
Bsp1720I	GCTNAGC	1 cut(s)	1725
BspACI	CCGC	6 cut(s)	310, 675, 764, 1381, 1979, 2551
BspANI	GGCC	6 cut(s)	50, 367, 595, 1443, 2679, 3101
BspCNI	CTCAG	4 cut(s)	1257, 1754, 2326, 3088
BspDI	ATCGAT	1 cut(s)	27
BspFNI	CGCG	3 cut(s)	675, 1977, 1979
BspHI	TCATGA	2 cut(s)	409, 2017
BspLI	GGNNCC	1 cut(s)	2178
BspMI	ACCTGC	1 cut(s)	1924
BspPI	GGATC	6 cut(s)	319, 627, 1593, 1856, 2421, 3076
BspQI	GCTCTTC	3 cut(s)	176, 1813, 2398
BspTI	CTTAAG	1 cut(s)	2477
BsrDI	GCAATG	4 cut(s)	1108, 1168, 1281, 2937
BsrFI	RCCGGY	2 cut(s)	1110, 3101
BsrGI	TGTACA	2 cut(s)	838, 1186
BsrI	ACTGG	9 cut(s)	136, 142, 208, 262, 268, 583, 1840, 1948, 1958
BssAI	RCCGGY	2 cut(s)	1110, 3101
BssECI	CCNNGG	5 cut(s)	615, 951, 1774, 2278, 2279
BssNI	GRCGYC	1 cut(s)	2570
BssSI	CACGAG	1 cut(s)	1479
BssT1I	CCWWGG	1 cut(s)	951
Bst2BI	CACGAG	1 cut(s)	1479
Bst2UI	CCWGG	5 cut(s)	743, 975, 1266, 2280, 2363
Bst4CI	ACNGT	3 cut(s)	117, 713, 1027
Bst6I	CTCTTC	4 cut(s)	176, 1813, 2398, 2582
BstACI	GRCGYC	1 cut(s)	2570
BstAFI	CTTAAG	1 cut(s)	2477
BstAPI	GCANNNNNTGC	2 cut(s)	1107, 1599
BstAUI	TGTACA	2 cut(s)	838, 1186
BstBAI	YACGTR	1 cut(s)	1854
BstC8I	GCNNGC	4 cut(s)	62, 802, 1112, 1441
BstDSI	CCRYGG	1 cut(s)	1774
BstF5I	GGATG	8 cut(s)	286, 856, 1131, 1261, 1303, 2134, 2167, 2309
BstFNI	CGCG	3 cut(s)	675, 1977, 1979
BstH2I	RGCGCY	1 cut(s)	905
BstHHI	GCGC	4 cut(s)	164, 904, 1979, 2603
BstMAI	GTCTC	1 cut(s)	96
BstNI	CCWGG	5 cut(s)	743, 975, 1266, 2280, 2363
BstNSI	RCATGY	1 cut(s)	804
BstSCI	CCNGG	8 cut(s)	614, 615, 741, 973, 1264, 2157, 2278, 2361
BstSFI	CTRYAG	1 cut(s)	466
BstSLI	GKGCMC	1 cut(s)	602
BstUI	CGCG	3 cut(s)	675, 1977, 1979
BstV1I	GCAGC	4 cut(s)	2393, 2627, 2763, 2766
BstV2I	GAAGAC	3 cut(s)	146, 1224, 1956
BstX2I	RGATCY	5 cut(s)	104, 324, 619, 2723, 3068
BstXI	CCANNNNNNTGG	1 cut(s)	958
BstYI	RGATCY	5 cut(s)	104, 324, 619, 2723, 3068
Bsu15I	ATCGAT	1 cut(s)	27
Bsu36I	CCTNAGG	1 cut(s)	1866
BsuI	GTATCC	2 cut(s)	956, 2085
BsuRI	GGCC	6 cut(s)	50, 367, 595, 1443, 2679, 3101
BsuTUI	ATCGAT	1 cut(s)	27
BtgI	CCRYGG	1 cut(s)	1774
BtrI	CACGTC	1 cut(s)	2000
BtsCI	GGATG	8 cut(s)	286, 856, 1131, 1261, 1303, 2134, 2167, 2309
BtsIMutI	CAGTG	2 cut(s)	113, 2915
BveI	ACCTGC	1 cut(s)	1924
Cac8I	GCNNGC	4 cut(s)	62, 802, 1112, 1441
CaiI	CAGNNNCTG	3 cut(s)	1360, 1748, 1939
CciI	TCATGA	2 cut(s)	409, 2017
CfoI	GCGC	4 cut(s)	164, 904, 1979, 2603
Cfr10I	RCCGGY	2 cut(s)	1110, 3101
Cfr13I	GGNCC	5 cut(s)	206, 593, 1442, 2177, 2978
Cfr9I	CCCGGG	1 cut(s)	615
ClaI	ATCGAT	1 cut(s)	27
CseI	GACGC	2 cut(s)	294, 2578
Csp6I	GTAC	8 cut(s)	477, 507, 650, 839, 1187, 1541, 1888, 1957
CviQI	GTAC	8 cut(s)	477, 507, 650, 839, 1187, 1541, 1888, 1957
DraI	TTTAAA	1 cut(s)	1221
Eam1104I	CTCTTC	4 cut(s)	176, 1813, 2398, 2582
EarI	CTCTTC	4 cut(s)	176, 1813, 2398, 2582
Eco130I	CCWWGG	1 cut(s)	951
Eco147I	AGGCCT	1 cut(s)	50
Eco47I	GGWCC	3 cut(s)	206, 2177, 2978
Eco47III	AGCGCT	1 cut(s)	903
Eco57I	CTGAAG	5 cut(s)	831, 954, 1751, 2232, 2939
Eco72I	CACGTG	1 cut(s)	1854
Eco81I	CCTNAGG	1 cut(s)	1866
Eco88I	CYCGRG	3 cut(s)	390, 615, 2172
EcoO109I	RGGNCCY	1 cut(s)	2177
EcoRI	GAATTC	2 cut(s)	35, 1283
EcoRII	CCWGG	5 cut(s)	741, 973, 1264, 2278, 2361
EcoT14I	CCWWGG	1 cut(s)	951
EcoT22I	ATGCAT	3 cut(s)	407, 806, 1595
ErhI	CCWWGG	1 cut(s)	951
FalI	AAGNNNNNCTT	4 cut(s)	343, 375, 2856, 2888
FaqI	GGGAC	5 cut(s)	244, 250, 256, 292, 2363
FauI	CCCGC	2 cut(s)	317, 668
FauNDI	CATATG	2 cut(s)	752, 1018
FbaI	TGATCA	1 cut(s)	1035
Fnu4HI	GCNGC	5 cut(s)	765, 2407, 2616, 2777, 2780
FokI	GGATG	8 cut(s)	273, 863, 1118, 1248, 1310, 2141, 2174, 2316
Fsp4HI	GCNGC	5 cut(s)	765, 2407, 2616, 2777, 2780
FspBI	CTAG	4 cut(s)	1236, 1680, 2340, 2727
GlaI	GCGC	4 cut(s)	163, 903, 1978, 2602
GluI	GCNGC	5 cut(s)	765, 2407, 2616, 2777, 2780
GsaI	CCCAGC	1 cut(s)	3026
GsuI	CTGGAG	2 cut(s)	996, 1446
HaeII	RGCGCY	1 cut(s)	905
HaeIII	GGCC	6 cut(s)	50, 367, 595, 1443, 2679, 3101
HapII	CCGG	6 cut(s)	328, 616, 1111, 2008, 2158, 3102
HgaI	GACGC	2 cut(s)	294, 2578
HhaI	GCGC	4 cut(s)	164, 904, 1979, 2603
Hin1I	GRCGYC	1 cut(s)	2570
Hin6I	GCGC	4 cut(s)	162, 902, 1977, 2601
HinP1I	GCGC	4 cut(s)	162, 902, 1977, 2601
HindIII	AAGCTT	2 cut(s)	914, 2465
HpaII	CCGG	6 cut(s)	328, 616, 1111, 2008, 2158, 3102
HphI	GGTGA	4 cut(s)	248, 1993, 2381, 2834
Hpy166II	GTNNAC	3 cut(s)	70, 425, 1857
Hpy8I	GTNNAC	3 cut(s)	70, 425, 1857
HpyCH4III	ACNGT	3 cut(s)	117, 713, 1027
HpyCH4IV	ACGT	3 cut(s)	1853, 1882, 1999
HpySE526I	ACGT	3 cut(s)	1853, 1882, 1999
Hsp92I	GRCGYC	1 cut(s)	2570
HspAI	GCGC	4 cut(s)	162, 902, 1977, 2601
KroI	GCCGGC	1 cut(s)	1110
KroNI	GCCGGC	1 cut(s)	1112
Ksp22I	TGATCA	1 cut(s)	1035
LguI	GCTCTTC	3 cut(s)	176, 1813, 2398
LmnI	GCTCC	3 cut(s)	977, 1357, 2027
Lsp1109I	GCAGC	4 cut(s)	2393, 2627, 2763, 2766
LweI	GCATC	6 cut(s)	33, 751, 1979, 2020, 2602, 3075
MaeI	CTAG	4 cut(s)	1236, 1680, 2340, 2727
MaeII	ACGT	3 cut(s)	1853, 1882, 1999
MaeIII	GTNAC	7 cut(s)	455, 1127, 1481, 1831, 2111, 2398, 2797
MfeI	CAATTG	2 cut(s)	1707, 2958
MflI	RGATCY	5 cut(s)	104, 324, 619, 2723, 3068
MhlI	GDGCHC	3 cut(s)	602, 2438, 3051
MlyI	GAGTC	6 cut(s)	133, 232, 1437, 1478, 2237, 2815
MmeI	TCCRAC	7 cut(s)	99, 121, 152, 1275, 1365, 1975, 2211
Mph1103I	ATGCAT	3 cut(s)	407, 806, 1595
MroNI	GCCGGC	1 cut(s)	1110
MslI	CAYNNNNRTG	3 cut(s)	2016, 2022, 2431
MspA1I	CMGCKG	2 cut(s)	1248, 1439
MspCI	CTTAAG	1 cut(s)	2477
MspI	CCGG	6 cut(s)	328, 616, 1111, 2008, 2158, 3102
MspR9I	CCNGG	8 cut(s)	616, 617, 743, 975, 1266, 2159, 2280, 2363
MunI	CAATTG	2 cut(s)	1707, 2958
Mva1269I	GAATGC	4 cut(s)	405, 454, 1096, 2644
MvaI	CCWGG	5 cut(s)	743, 975, 1266, 2280, 2363
MvnI	CGCG	3 cut(s)	675, 1977, 1979
NaeI	GCCGGC	1 cut(s)	1112
NciI	CCSGG	3 cut(s)	616, 617, 2159
NdeI	CATATG	2 cut(s)	752, 1018
NgoMIV	GCCGGC	1 cut(s)	1110
NlaIV	GGNNCC	1 cut(s)	2178
NmuCI	GTSAC	3 cut(s)	455, 1127, 1481
NsiI	ATGCAT	3 cut(s)	407, 806, 1595
NspI	RCATGY	1 cut(s)	804
PaeI	GCATGC	1 cut(s)	804
PaeR7I	CTCGAG	1 cut(s)	390
PagI	TCATGA	2 cut(s)	409, 2017
PasI	CCCWGGG	1 cut(s)	2279
PceI	AGGCCT	1 cut(s)	50
PciSI	GCTCTTC	3 cut(s)	176, 1813, 2398
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 1879
PctI	GAATGC	4 cut(s)	405, 454, 1096, 2644
PdiI	GCCGGC	1 cut(s)	1112
PfeI	GAWTC	6 cut(s)	854, 892, 1343, 1984, 2531, 2669
PfoI	TCCNGGA	2 cut(s)	1264, 2157
PkrI	GCNGC	5 cut(s)	766, 2408, 2617, 2778, 2781
PleI	GAGTC	6 cut(s)	132, 231, 1436, 1478, 2236, 2814
PmaCI	CACGTG	1 cut(s)	1854
PmlI	CACGTG	1 cut(s)	1854
PpsI	GAGTC	6 cut(s)	132, 231, 1436, 1478, 2236, 2814
Ppu21I	YACGTR	1 cut(s)	1854
PpuMI	RGGWCCY	1 cut(s)	2177
PshBI	ATTAAT	3 cut(s)	699, 1041, 2517
Psp5II	RGGWCCY	1 cut(s)	2177
Psp6I	CCWGG	5 cut(s)	741, 973, 1264, 2278, 2361
PspCI	CACGTG	1 cut(s)	1854
PspFI	CCCAGC	1 cut(s)	3022
PspGI	CCWGG	5 cut(s)	741, 973, 1264, 2278, 2361
PspN4I	GGNNCC	1 cut(s)	2178
PspPI	GGNCC	5 cut(s)	206, 593, 1442, 2177, 2978
PspPPI	RGGWCCY	1 cut(s)	2177
PsrI	GAACNNNNNNTAC	2 cut(s)	1179, 1211
PstNI	CAGNNNCTG	3 cut(s)	1360, 1748, 1939
PsuI	RGATCY	5 cut(s)	104, 324, 619, 2723, 3068
PvuII	CAGCTG	2 cut(s)	1248, 1439
RsaI	GTAC	8 cut(s)	478, 508, 651, 840, 1188, 1542, 1889, 1958
RsaNI	GTAC	8 cut(s)	477, 507, 650, 839, 1187, 1541, 1888, 1957
RseI	CAYNNNNRTG	3 cut(s)	2016, 2022, 2431
SapI	GCTCTTC	3 cut(s)	176, 1813, 2398
SatI	GCNGC	5 cut(s)	765, 2407, 2616, 2777, 2780
Sau96I	GGNCC	5 cut(s)	206, 593, 1442, 2177, 2978
ScaI	AGTACT	1 cut(s)	1889
SchI	GAGTC	6 cut(s)	133, 232, 1437, 1478, 2237, 2815
ScrFI	CCNGG	8 cut(s)	616, 617, 743, 975, 1266, 2159, 2280, 2363
SduI	GDGCHC	3 cut(s)	602, 2438, 3051
SfaNI	GCATC	6 cut(s)	33, 751, 1979, 2020, 2602, 3075
SfcI	CTRYAG	1 cut(s)	466
Sfr274I	CTCGAG	1 cut(s)	390
SinI	GGWCC	3 cut(s)	206, 2177, 2978
SlaI	CTCGAG	1 cut(s)	390
SmaI	CCCGGG	1 cut(s)	617
SmiMI	CAYNNNNRTG	3 cut(s)	2016, 2022, 2431
SmlI	CTYRAG	4 cut(s)	390, 917, 2477, 2760
SmoI	CTYRAG	4 cut(s)	390, 917, 2477, 2760
SphI	GCATGC	1 cut(s)	804
SseBI	AGGCCT	1 cut(s)	50
SsiI	CCGC	6 cut(s)	310, 675, 764, 1381, 1979, 2551
SspI	AATATT	2 cut(s)	1758, 2538
SspMI	CTAG	4 cut(s)	1236, 1680, 2340, 2727
StuI	AGGCCT	1 cut(s)	50
StyD4I	CCNGG	8 cut(s)	614, 615, 741, 973, 1264, 2157, 2278, 2361
StyI	CCWWGG	1 cut(s)	951
TaaI	ACNGT	3 cut(s)	117, 713, 1027
TaiI	ACGT	3 cut(s)	1856, 1885, 2002
TaqI	TCGA	7 cut(s)	27, 33, 45, 391, 1487, 1534, 2804
TatI	WGTACW	3 cut(s)	838, 1186, 1887
TauI	GCSGC	1 cut(s)	767
TfiI	GAWTC	6 cut(s)	854, 892, 1343, 1984, 2531, 2669
TscAI	CASTG	2 cut(s)	120, 2922
TseFI	GTSAC	3 cut(s)	455, 1127, 1481
TseI	GCWGC	4 cut(s)	2406, 2615, 2776, 2779
Tsp45I	GTSAC	3 cut(s)	455, 1127, 1481
TspMI	CCCGGG	1 cut(s)	615
TspRI	CASTG	2 cut(s)	120, 2922
Vha464I	CTTAAG	1 cut(s)	2477
VpaK11BI	GGWCC	3 cut(s)	206, 2177, 2978
VspI	ATTAAT	3 cut(s)	699, 1041, 2517
XceI	RCATGY	1 cut(s)	804
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1851
XhoI	CTCGAG	1 cut(s)	390
XmaI	CCCGGG	1 cut(s)	615
XspI	CTAG	4 cut(s)	1236, 1680, 2340, 2727
ZrmI	AGTACT	1 cut(s)	1889
Zsp2I	ATGCAT	3 cut(s)	407, 806, 1595

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.