Rmu_sc0002219.1_g000018

Protein FAR1-RELATED SEQUENCE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002219.1
OG0016744
Physical Location & Seq
Reverse (-)
59387 .. 60559
1173 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1173 bp
atgaaggacaaaaaaccgatttctgttctgactgacggggatgacaaaatacaaaatgccgttgttgaagtttttcccaaggccagacatcgtctatgttcgtggcacatcgagaagaacttggctacaatcattaaggacctggacgtggtgaaagctttcactcaatttttatacaatgctataccaccggatgagtgggacctgggctggaagtctatggtagagacctatgggcttcaagacaatccatggattaatatgatgtaccacaggcgcaagagatgggcagaggcattttttaaaggccatttttttggtggaatgagtagcatgcaacgttgccaggggatccataggaatctggagggcgcgctaggtaagtatgacaggttttgtgaatatattccccgaatggacaagaccctgaggaaaatgagaaataatattagcgtggatgaccttaaatgcgagaactcaaagccagtcattattactcacatgcggtctttggagcagcagatagctgagatcttcactcatgacacctacttgctgataatgcaccagatagattgggagagaaaatacataatcaccaagtctgagccatatgcacaaggggacggtaaagtgtttcacctgacccagtatgacttgccacacaggcattggactgttaattaccaccatagtataagcaaagtgtggttcttgtgctcatgcaaactatttcagtcagacggaatcccttgtgcccatatattttcagtaatgaaagctgagctgatattgaagttacctgattccttggttctgaagcgatggacaatggatgtggggaagccagtgaacttgcataatttgtcggacaggaatttgcaaatggtaaggtatgcatccttggcttcagaaattaaaagtatctgtttcccagcatctatgactgaaggaggaaccaagaagatgaaatgtgaaattgcaaagctggccaagccggcccatgatcgcacggagagccaaaaccacagtttattgcagaatttgatacatcgtcaccaacttcatgttggatcagatgcccacagctttaccggtttttcagttggcatcaatgccgaacattacgctcgcagtcttcctccgggtgaattcagaacctatttctattga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
FAR1 MULE SWIM

Protein Analysis

390

Amino Acids

45.43

Weight (kDa)

9.03

Isoelectric Point (pI)

42.21

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MULE PF10551 3 - 40 2.2e-08 MULE transposase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 374
AciI CCGC 1 cut(s) 505
AclI AACGTT 1 cut(s) 340
AclWI GGATC 3 cut(s) 346, 359, 1081
AcoI YGGCCR 1 cut(s) 990
AcsI RAATTY 3 cut(s) 877, 1042, 1151
AcuI CTGAAG 3 cut(s) 839, 894, 969
AfaI GTAC 1 cut(s) 269
AfiI CCNNNNNNNGG 1 cut(s) 148
AgeI ACCGGT 1 cut(s) 1094
AgsI TTSAA 3 cut(s) 68, 242, 796
AjiI CACGTC 1 cut(s) 148
AjnI CCWGG 3 cut(s) 141, 204, 345
AluBI AGCT 6 cut(s) 158, 527, 782, 787, 988, 1089
AluI AGCT 6 cut(s) 158, 527, 782, 787, 988, 1089
Alw21I GWGCWC 1 cut(s) 722
Alw26I GTCTC 1 cut(s) 221
AlwI GGATC 3 cut(s) 346, 359, 1081
AoxI GGCC 4 cut(s) 81, 307, 990, 999
ApeKI GCWGC 1 cut(s) 517
ApoI RAATTY 3 cut(s) 877, 1042, 1151
AseI ATTAAT 1 cut(s) 258
AsiGI ACCGGT 1 cut(s) 1094
Asp700I GAANNNNTTC 3 cut(s) 72, 158, 405
AspLEI GCGC 3 cut(s) 279, 374, 376
AspS9I GGNCC 3 cut(s) 139, 202, 1000
AsuC2I CCSGG 1 cut(s) 1146
AsuHPI GGTGA 5 cut(s) 163, 589, 632, 1049, 1160
AvaII GGWCC 2 cut(s) 139, 202
AxyI CCTNAGG 1 cut(s) 428
BaeGI GKGCMC 1 cut(s) 760
BalI TGGCCA 1 cut(s) 992
BamHI GGATCC 1 cut(s) 351
BbsI GAAGAC 1 cut(s) 1130
Bbv12I GWGCWC 1 cut(s) 722
BbvI GCAGC 1 cut(s) 529
BccI CCATC 2 cut(s) 279, 819
BceAI ACGGC 1 cut(s) 44
BciT130I CCWGG 3 cut(s) 143, 206, 347
BcnI CCSGG 1 cut(s) 1146
BcoDI GTCTC 1 cut(s) 221
BfaI CTAG 1 cut(s) 377
BglI GCCNNNNNGGC 2 cut(s) 667, 998
BglII AGATCT 1 cut(s) 531
BisI GCNGC 1 cut(s) 518
BlpI GCTNAGC 1 cut(s) 783
BlsI GCNGC 1 cut(s) 519
Bme1390I CCNGG 4 cut(s) 143, 206, 347, 1146
Bme18I GGWCC 2 cut(s) 139, 202
BmgBI CACGTC 1 cut(s) 148
BmgT120I GGNCC 3 cut(s) 139, 202, 1000
BmiI GGNNCC 3 cut(s) 203, 353, 958
BmrFI CCNGG 4 cut(s) 143, 206, 347, 1146
BmrI ACTGGG 1 cut(s) 643
BmsI GCATC 4 cut(s) 908, 947, 1069, 1119
BmuI ACTGGG 1 cut(s) 643
BpiI GAAGAC 1 cut(s) 1130
BpmI CTGGAG 1 cut(s) 386
Bpu1102I GCTNAGC 1 cut(s) 783
BpuMI CCSGG 1 cut(s) 1146
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 6 cut(s) 78, 205, 251, 346, 810, 903
BsaWI WCCGGW 2 cut(s) 190, 1094
Bsc4I CCNNNNNNNGG 1 cut(s) 148
Bse118I RCCGGY 2 cut(s) 997, 1094
Bse1I ACTGG 3 cut(s) 485, 649, 848
Bse21I CCTNAGG 1 cut(s) 428
BseBI CCWGG 3 cut(s) 143, 206, 347
BseDI CCNNGG 6 cut(s) 78, 205, 251, 346, 810, 903
BseGI GGATG 5 cut(s) 46, 199, 463, 841, 899
BseLI CCNNNNNNNGG 1 cut(s) 148
BseMII CTCAG 4 cut(s) 419, 519, 597, 774
BseNI ACTGG 3 cut(s) 485, 649, 848
BsePI GCGCGC 1 cut(s) 372
BseSI GKGCMC 1 cut(s) 760
BseXI GCAGC 1 cut(s) 529
BseYI CCCAGC 1 cut(s) 934
Bsh1236I CGCG 1 cut(s) 374
BshFI GGCC 4 cut(s) 83, 309, 992, 1001
BshTI ACCGGT 1 cut(s) 1094
BsiHKAI GWGCWC 1 cut(s) 722
BsiSI CCGG 4 cut(s) 191, 998, 1095, 1145
BslFI GGGAC 2 cut(s) 215, 638
BslI CCNNNNNNNGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 221
BsmFI GGGAC 2 cut(s) 215, 638
BsnI GGCC 4 cut(s) 83, 309, 992, 1001
Bso31I GGTCTC 1 cut(s) 221
Bsp1286I GDGCHC 2 cut(s) 722, 760
Bsp143I GATC 4 cut(s) 351, 531, 1006, 1073
Bsp1720I GCTNAGC 1 cut(s) 783
Bsp19I CCATGG 1 cut(s) 251
BspACI CCGC 1 cut(s) 505
BspANI GGCC 4 cut(s) 83, 309, 992, 1001
BspCNI CTCAG 4 cut(s) 420, 520, 598, 775
BspFNI CGCG 1 cut(s) 374
BspHI TCATGA 1 cut(s) 541
BspLI GGNNCC 3 cut(s) 203, 353, 958
BspPI GGATC 3 cut(s) 346, 359, 1081
BspTNI GGTCTC 1 cut(s) 221
BsrFI RCCGGY 2 cut(s) 997, 1094
BsrI ACTGG 3 cut(s) 485, 649, 848
BssAI RCCGGY 2 cut(s) 997, 1094
BssECI CCNNGG 6 cut(s) 78, 205, 251, 346, 810, 903
BssHII GCGCGC 1 cut(s) 372
BssMI GATC 4 cut(s) 351, 531, 1006, 1073
BssT1I CCWWGG 4 cut(s) 78, 251, 810, 903
Bst2UI CCWGG 3 cut(s) 143, 206, 347
Bst4CI ACNGT 3 cut(s) 629, 679, 1031
BstC8I GCNNGC 5 cut(s) 335, 374, 990, 999, 1132
BstDEI CTNAG 4 cut(s) 428, 528, 606, 783
BstDSI CCRYGG 1 cut(s) 251
BstF5I GGATG 5 cut(s) 46, 199, 463, 841, 899
BstFNI CGCG 1 cut(s) 374
BstHHI GCGC 3 cut(s) 279, 374, 376
BstKTI GATC 4 cut(s) 354, 534, 1009, 1076
BstMAI GTCTC 1 cut(s) 221
BstMBI GATC 4 cut(s) 351, 531, 1006, 1073
BstMWI GCNNNNNNNGC 7 cut(s) 562, 667, 905, 989, 994, 998, 1017
BstNI CCWGG 3 cut(s) 143, 206, 347
BstNSI RCATGY 2 cut(s) 337, 505
BstSCI CCNGG 4 cut(s) 141, 204, 345, 1144
BstSLI GKGCMC 1 cut(s) 760
BstUI CGCG 1 cut(s) 374
BstV1I GCAGC 1 cut(s) 529
BstV2I GAAGAC 1 cut(s) 1130
BstX2I RGATCY 2 cut(s) 351, 531
BstXI CCANNNNNNTGG 1 cut(s) 317
BstYI RGATCY 2 cut(s) 351, 531
Bsu36I CCTNAGG 1 cut(s) 428
BsuRI GGCC 4 cut(s) 83, 309, 992, 1001
BtgI CCRYGG 1 cut(s) 251
BtgZI GCGATG 1 cut(s) 838
BtrI CACGTC 1 cut(s) 148
BtsCI GGATG 5 cut(s) 46, 199, 463, 841, 899
BtsIMutI CAGTG 1 cut(s) 855
Cac8I GCNNGC 5 cut(s) 335, 374, 990, 999, 1132
CciI TCATGA 1 cut(s) 541
CfoI GCGC 3 cut(s) 279, 374, 376
Cfr10I RCCGGY 2 cut(s) 997, 1094
Cfr13I GGNCC 3 cut(s) 139, 202, 1000
Csp6I GTAC 1 cut(s) 268
CspAI ACCGGT 1 cut(s) 1094
CspCI CAANNNNNGTGG 2 cut(s) 819, 854
CviAII CATG 7 cut(s) 252, 334, 502, 542, 723, 1004, 1067
CviQI GTAC 1 cut(s) 268
DdeI CTNAG 4 cut(s) 428, 528, 606, 783
DpnI GATC 4 cut(s) 353, 533, 1008, 1075
DpnII GATC 4 cut(s) 351, 531, 1006, 1073
DraI TTTAAA 1 cut(s) 304
EaeI YGGCCR 1 cut(s) 990
Eco130I CCWWGG 4 cut(s) 78, 251, 810, 903
Eco31I GGTCTC 1 cut(s) 221
Eco47I GGWCC 2 cut(s) 139, 202
Eco57I CTGAAG 3 cut(s) 839, 894, 969
Eco81I CCTNAGG 1 cut(s) 428
EcoO109I RGGNCCY 2 cut(s) 139, 202
EcoRI GAATTC 1 cut(s) 1151
EcoRII CCWGG 3 cut(s) 141, 204, 345
EcoT14I CCWWGG 4 cut(s) 78, 251, 810, 903
EcoT22I ATGCAT 1 cut(s) 901
ErhI CCWWGG 4 cut(s) 78, 251, 810, 903
FaeI CATG 7 cut(s) 255, 337, 505, 545, 726, 1007, 1070
FaqI GGGAC 2 cut(s) 215, 638
FatI CATG 7 cut(s) 251, 333, 501, 541, 722, 1003, 1066
FauNDI CATATG 1 cut(s) 613
Fnu4HI GCNGC 1 cut(s) 518
FokI GGATG 5 cut(s) 53, 206, 470, 848, 886
Fsp4HI GCNGC 1 cut(s) 518
FspBI CTAG 1 cut(s) 377
GlaI GCGC 3 cut(s) 278, 373, 375
GluI GCNGC 1 cut(s) 518
GsaI CCCAGC 1 cut(s) 938
GsuI CTGGAG 1 cut(s) 386
HaeIII GGCC 4 cut(s) 83, 309, 992, 1001
HapII CCGG 4 cut(s) 191, 998, 1095, 1145
HhaI GCGC 3 cut(s) 279, 374, 376
Hin1II CATG 7 cut(s) 255, 337, 505, 545, 726, 1007, 1070
Hin6I GCGC 3 cut(s) 277, 372, 374
HinP1I GCGC 3 cut(s) 277, 372, 374
HindIII AAGCTT 1 cut(s) 156
HinfI GANTC 3 cut(s) 361, 747, 806
HpaII CCGG 4 cut(s) 191, 998, 1095, 1145
HphI GGTGA 5 cut(s) 163, 589, 632, 1049, 1160
Hpy166II GTNNAC 1 cut(s) 853
Hpy188I TCNGA 8 cut(s) 30, 607, 742, 819, 871, 913, 1078, 1157
Hpy188III TCNNGA 4 cut(s) 112, 242, 365, 542
Hpy8I GTNNAC 1 cut(s) 853
HpyAV CCTTC 1 cut(s) 944
HpyCH4III ACNGT 3 cut(s) 629, 679, 1031
HpyCH4IV ACGT 2 cut(s) 147, 340
HpyCH4V TGCA 9 cut(s) 337, 565, 617, 726, 859, 883, 899, 983, 1039
HpyF10VI GCNNNNNNNGC 7 cut(s) 562, 667, 905, 989, 994, 998, 1017
HpyF3I CTNAG 4 cut(s) 428, 528, 606, 783
HpySE526I ACGT 2 cut(s) 147, 340
Hsp92II CATG 7 cut(s) 255, 337, 505, 545, 726, 1007, 1070
HspAI GCGC 3 cut(s) 277, 372, 374
KroI GCCGGC 1 cut(s) 997
KroNI GCCGGC 1 cut(s) 999
Kzo9I GATC 4 cut(s) 351, 531, 1006, 1073
LmnI GCTCC 1 cut(s) 514
Lsp1109I GCAGC 1 cut(s) 529
LweI GCATC 4 cut(s) 908, 947, 1069, 1119
MaeI CTAG 1 cut(s) 377
MaeII ACGT 2 cut(s) 147, 340
MaeIII GTNAC 2 cut(s) 798, 1055
MalI GATC 4 cut(s) 353, 533, 1008, 1075
MboI GATC 4 cut(s) 351, 531, 1006, 1073
MboII GAAGA 4 cut(s) 127, 526, 976, 1130
MflI RGATCY 2 cut(s) 351, 531
MhlI GDGCHC 2 cut(s) 722, 760
MlsI TGGCCA 1 cut(s) 992
MluCI AATT 8 cut(s) 167, 682, 862, 877, 915, 978, 1042, 1151
MluNI TGGCCA 1 cut(s) 992
MmeI TCCRAC 2 cut(s) 849, 1051
MnlI CCTC 5 cut(s) 286, 361, 423, 947, 1152
Mox20I TGGCCA 1 cut(s) 992
Mph1103I ATGCAT 1 cut(s) 901
MroNI GCCGGC 1 cut(s) 997
MroXI GAANNNNTTC 3 cut(s) 72, 158, 405
MscI TGGCCA 1 cut(s) 992
MseI TTAA 6 cut(s) 135, 258, 303, 465, 681, 918
Msp20I TGGCCA 1 cut(s) 992
MspI CCGG 4 cut(s) 191, 998, 1095, 1145
MspR9I CCNGG 4 cut(s) 143, 206, 347, 1146
MvaI CCWGG 3 cut(s) 143, 206, 347
MvnI CGCG 1 cut(s) 374
MwoI GCNNNNNNNGC 7 cut(s) 562, 667, 905, 989, 994, 998, 1017
NaeI GCCGGC 1 cut(s) 999
NciI CCSGG 1 cut(s) 1146
NcoI CCATGG 1 cut(s) 251
NdeI CATATG 1 cut(s) 613
NdeII GATC 4 cut(s) 351, 531, 1006, 1073
NgoMIV GCCGGC 1 cut(s) 997
NlaIII CATG 7 cut(s) 255, 337, 505, 545, 726, 1007, 1070
NlaIV GGNNCC 3 cut(s) 203, 353, 958
NmuCI GTSAC 1 cut(s) 1055
NsiI ATGCAT 1 cut(s) 901
NspI RCATGY 2 cut(s) 337, 505
PaeI GCATGC 1 cut(s) 337
PagI TCATGA 1 cut(s) 541
PauI GCGCGC 1 cut(s) 372
PdiI GCCGGC 1 cut(s) 999
PdmI GAANNNNTTC 3 cut(s) 72, 158, 405
PfeI GAWTC 3 cut(s) 361, 747, 806
PflFI GACNNNGTC 1 cut(s) 90
PinAI ACCGGT 1 cut(s) 1094
PkrI GCNGC 1 cut(s) 519
PpuMI RGGWCCY 2 cut(s) 139, 202
PshBI ATTAAT 1 cut(s) 258
Psp1406I AACGTT 1 cut(s) 340
Psp5II RGGWCCY 2 cut(s) 139, 202
Psp6I CCWGG 3 cut(s) 141, 204, 345
PspFI CCCAGC 1 cut(s) 934
PspGI CCWGG 3 cut(s) 141, 204, 345
PspN4I GGNNCC 3 cut(s) 203, 353, 958
PspPI GGNCC 3 cut(s) 139, 202, 1000
PspPPI RGGWCCY 2 cut(s) 139, 202
PsuI RGATCY 2 cut(s) 351, 531
PsyI GACNNNGTC 1 cut(s) 90
PteI GCGCGC 1 cut(s) 372
RsaI GTAC 1 cut(s) 269
RsaNI GTAC 1 cut(s) 268
SaqAI TTAA 6 cut(s) 135, 258, 303, 465, 681, 918
SatI GCNGC 1 cut(s) 518
Sau3AI GATC 4 cut(s) 351, 531, 1006, 1073
Sau96I GGNCC 3 cut(s) 139, 202, 1000
ScrFI CCNGG 4 cut(s) 143, 206, 347, 1146
SduI GDGCHC 2 cut(s) 722, 760
SfaNI GCATC 4 cut(s) 908, 947, 1069, 1119
SfiI GGCCNNNNNGGCC 1 cut(s) 998
SinI GGWCC 2 cut(s) 139, 202
SphI GCATGC 1 cut(s) 337
Sse9I AATT 8 cut(s) 167, 682, 862, 877, 915, 978, 1042, 1151
SsiI CCGC 1 cut(s) 505
SspI AATATT 1 cut(s) 448
SspMI CTAG 1 cut(s) 377
StyD4I CCNGG 4 cut(s) 141, 204, 345, 1144
StyI CCWWGG 4 cut(s) 78, 251, 810, 903
TaaI ACNGT 3 cut(s) 629, 679, 1031
TaiI ACGT 2 cut(s) 150, 343
TaqI TCGA 1 cut(s) 111
TasI AATT 8 cut(s) 167, 682, 862, 877, 915, 978, 1042, 1151
TfiI GAWTC 3 cut(s) 361, 747, 806
Tru1I TTAA 6 cut(s) 135, 258, 303, 465, 681, 918
Tru9I TTAA 6 cut(s) 135, 258, 303, 465, 681, 918
TscAI CASTG 1 cut(s) 855
TseFI GTSAC 1 cut(s) 1055
TseI GCWGC 1 cut(s) 517
Tsp45I GTSAC 1 cut(s) 1055
TspDTI ATGAA 4 cut(s) 17, 791, 983, 1055
TspGWI ACGGA 2 cut(s) 759, 1028
TspRI CASTG 1 cut(s) 855
Tth111I GACNNNGTC 1 cut(s) 90
VpaK11BI GGWCC 2 cut(s) 139, 202
VspI ATTAAT 1 cut(s) 258
XapI RAATTY 3 cut(s) 877, 1042, 1151
XceI RCATGY 2 cut(s) 337, 505
XcmI CCANNNNNNNNNTGG 4 cut(s) 195, 317, 669, 1067
XmnI GAANNNNTTC 3 cut(s) 72, 158, 405
XspI CTAG 1 cut(s) 377
Zsp2I ATGCAT 1 cut(s) 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.