Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002260.1

Orthogroup ID

OG0016308

Physical Location & Seq

Genomic Coordinates Forward (+)

10207 .. 13288

Gene Structure 3082 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

atgggaagagcgccgtgctgtgaaaaagttgggctaaaaagaggaaggtggacagccgaagaagacgagatcttgacaaactacattcaactccatggagaaggctcttggagatctttgcccaagaatgcaggtttgctaaggtgcgggaagagttgcagactgaggtggataaattatctgaggactgacttgaggagagggaacatcacacaagaggaggaagaaaccattgttaagttgcacactgctttgggtaataggtatgtaataatgcatgctcctcaccatctcctatatattttgaggactgacttgaggagagggaacatcacacaagaggaggaagaaaccattgttaagttgcacactgctttgggtaataggtggtcattgattgctgcacacttaccaggaagaacggacaatgagattaaaaactactggaactctcatttgagtcgcaaaatttacaccttcaccaagcttatgaaaaacgaatgtctcatccccaccatgatcaataatgtttcgaagttagctgctgcgaaatcgaagcgcagagtacgtacaagcagatccgccatgaaaagcaagaataagctcaacaagaatggtacagtactagccccatttccacaagttccaaatccagcttataagagtgatgtgtttgaatcattaaccagagaaaacccaaatcaagtgcaaacaagtcattcaatgggcttggagtgttgggccccaaaagagagagatgaaaaagaggaagaggagaagacaataagaacgttgggtggtatgcaaggttcttgcttggatattacagcagggatgattagttcaactactcctgttatatatgctgctaataatggagaaaaagaggcattggacccatatgaatgtgtagacagtgatgtaattgtggatcataacccaagtgggagtaccaatgttgtgagagaaaatggagtcatgggttttacagatgaccatgaggtgaccataaagagtcatcaaggtatttggagctcaaatattgaagggagctgtggtgagatgtatgctttctcgtcaccactgaatgccgcctttgatgatcatgaatggctcgattgtgattggtttggtggtggtggtggtggtcttcaatgtcataatgatgaattggagttatggggtgaacgagaggtgaggataccttggttacgatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006950 GO:0006970 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009651 GO:0009719 GO:0009723 GO:0009725 GO:0009733 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010033 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042221 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

405

Amino Acids

45.85

Weight (kDa)

6.55

Isoelectric Point (pI)

56.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	4.8e-16	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 77	2.1e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	108 - 153	3.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	112 - 158	1.7e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016308)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g19310
malus_domestica	MD13G1158000.v1.1 MD16G1158800.v1.1
prunus_persica	Prupe.1G125300_v2.0.a1
pyrus_communis	pycom13g13510
rosa_chinensis	RchiOBHm_Chr4g0424331
rosa_laevigata	RLG00000007485
rosa_multiflora	Rmu_sc0002260.1_g000004
rosa_roxburghii	Rroxscaffold_5G00366280
rosa_rugosa	Rorug04G0195900
rosa_samantha	Rh4AG252800 Rh4BG258200 Rh4CG269100 Rh4DG252600
rosa_wichuraiana	Rw4G021800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	660
Acc36I	ACCTGC	1 cut(s)	122
AccI	GTMKAC	1 cut(s)	912
AciI	CCGC	3 cut(s)	147, 582, 1092
AclI	AACGTT	1 cut(s)	791
AclWI	GGATC	2 cut(s)	573, 939
AcsI	RAATTY	1 cut(s)	468
AfaI	GTAC	5 cut(s)	567, 571, 619, 624, 952
AgsI	TTSAA	6 cut(s)	89, 677, 723, 846, 1046, 1154
AjnI	CCWGG	1 cut(s)	412
AloI	GAACNNNNNNTCC	2 cut(s)	826, 858
AluBI	AGCT	6 cut(s)	487, 542, 604, 656, 1035, 1053
AluI	AGCT	6 cut(s)	487, 542, 604, 656, 1035, 1053
Alw21I	GWGCWC	1 cut(s)	1037
Alw26I	GTCTC	1 cut(s)	509
AlwI	GGATC	2 cut(s)	573, 939
AoxI	GGCC	1 cut(s)	741
ApaI	GGGCCC	1 cut(s)	745
ApeKI	GCWGC	4 cut(s)	401, 542, 545, 866
ApoI	RAATTY	1 cut(s)	468
AspLEI	GCGC	2 cut(s)	13, 561
AspS9I	GGNCC	3 cut(s)	741, 742, 895
AsuHPI	GGTGA	7 cut(s)	278, 472, 1015, 1070, 1071, 1196, 1207
AsuII	TTCGAA	1 cut(s)	533
AvaII	GGWCC	1 cut(s)	895
BaeGI	GKGCMC	1 cut(s)	745
BaeI	ACNNNNGTAYC	1 cut(s)	1193
BanII	GRGCYC	2 cut(s)	745, 1037
BbsI	GAAGAC	3 cut(s)	69, 785, 1142
Bbv12I	GWGCWC	1 cut(s)	1037
BbvI	GCAGC	4 cut(s)	388, 529, 532, 853
BccI	CCATC	1 cut(s)	297
BciT130I	CCWGG	1 cut(s)	414
BciVI	GTATCC	1 cut(s)	1194
BclI	TGATCA	2 cut(s)	519, 1102
BcoDI	GTCTC	1 cut(s)	509
BfaI	CTAG	1 cut(s)	626
BfoI	RGCGCY	1 cut(s)	14
BfuAI	ACCTGC	1 cut(s)	122
BfuI	GTATCC	1 cut(s)	1194
BglII	AGATCT	2 cut(s)	69, 113
BisI	GCNGC	5 cut(s)	402, 543, 546, 867, 1092
BlsI	GCNGC	5 cut(s)	403, 544, 547, 868, 1093
BmcAI	AGTACT	1 cut(s)	624
Bme1390I	CCNGG	1 cut(s)	414
Bme18I	GGWCC	1 cut(s)	895
BmgT120I	GGNCC	3 cut(s)	741, 742, 895
BmiI	GGNNCC	3 cut(s)	743, 744, 897
BmrFI	CCNGG	1 cut(s)	414
BpiI	GAAGAC	3 cut(s)	69, 785, 1142
Bpu10I	CCTNAGC	1 cut(s)	140
Bpu14I	TTCGAA	1 cut(s)	533
BpuEI	CTTGAG	2 cut(s)	214, 337
BsaAI	YACGTR	1 cut(s)	569
BsaJI	CCNNGG	2 cut(s)	94, 1205
BsaXI	ACNNNNNCTCC	2 cut(s)	1042, 1072
Bse1I	ACTGG	1 cut(s)	449
BseBI	CCWGG	1 cut(s)	414
BseDI	CCNNGG	2 cut(s)	94, 1205
BseGI	GGATG	2 cut(s)	507, 840
BseMII	CTCAG	2 cut(s)	155, 173
BseNI	ACTGG	1 cut(s)	449
BseRI	GAGGAG	6 cut(s)	211, 233, 273, 334, 356, 788
BseSI	GKGCMC	1 cut(s)	745
BseXI	GCAGC	4 cut(s)	388, 529, 532, 853
BsgI	GTGCAG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	743
BsiHKAI	GWGCWC	1 cut(s)	1037
BsmAI	GTCTC	1 cut(s)	509
BsmI	GAATGC	2 cut(s)	133, 1093
BsnI	GGCC	1 cut(s)	743
Bsp119I	TTCGAA	1 cut(s)	533
Bsp120I	GGGCCC	1 cut(s)	741
Bsp1286I	GDGCHC	2 cut(s)	745, 1037
Bsp143I	GATC	6 cut(s)	69, 113, 519, 578, 931, 1102
Bsp19I	CCATGG	1 cut(s)	94
BspACI	CCGC	3 cut(s)	147, 582, 1092
BspANI	GGCC	1 cut(s)	743
BspCNI	CTCAG	2 cut(s)	156, 174
BspHI	TCATGA	1 cut(s)	1105
BspLI	GGNNCC	3 cut(s)	743, 744, 897
BspMI	ACCTGC	1 cut(s)	122
BspPI	GGATC	2 cut(s)	573, 939
BspT104I	TTCGAA	1 cut(s)	533
BsrI	ACTGG	1 cut(s)	449
BssECI	CCNNGG	2 cut(s)	94, 1205
BssMI	GATC	6 cut(s)	69, 113, 519, 578, 931, 1102
BssT1I	CCWWGG	2 cut(s)	94, 1205
Bst2UI	CCWGG	1 cut(s)	414
Bst4CI	ACNGT	2 cut(s)	622, 917
Bst6I	CTCTTC	2 cut(s)	146, 765
BstBAI	YACGTR	1 cut(s)	569
BstBI	TTCGAA	1 cut(s)	533
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	3 cut(s)	140, 164, 182
BstDSI	CCRYGG	1 cut(s)	94
BstEII	GGTNACC	1 cut(s)	1003
BstF5I	GGATG	2 cut(s)	507, 840
BstH2I	RGCGCY	1 cut(s)	14
BstHHI	GCGC	2 cut(s)	13, 561
BstKTI	GATC	6 cut(s)	72, 116, 522, 581, 934, 1105
BstMAI	GTCTC	1 cut(s)	509
BstMBI	GATC	6 cut(s)	69, 113, 519, 578, 931, 1102
BstNI	CCWGG	1 cut(s)	414
BstNSI	RCATGY	1 cut(s)	281
BstPI	GGTNACC	1 cut(s)	1003
BstSCI	CCNGG	1 cut(s)	412
BstSLI	GKGCMC	1 cut(s)	745
BstSNI	TACGTA	1 cut(s)	569
BstV1I	GCAGC	4 cut(s)	388, 529, 532, 853
BstV2I	GAAGAC	3 cut(s)	69, 785, 1142
BstX2I	RGATCY	3 cut(s)	69, 113, 578
BstYI	RGATCY	3 cut(s)	69, 113, 578
BsuI	GTATCC	1 cut(s)	1194
BsuRI	GGCC	1 cut(s)	743
BtgI	CCRYGG	1 cut(s)	94
BtsCI	GGATG	2 cut(s)	507, 840
BtsI	GCAGTG	2 cut(s)	246, 369
BtsIMutI	CAGTG	4 cut(s)	246, 369, 922, 1082
BveI	ACCTGC	1 cut(s)	122
Cac8I	GCNNGC	1 cut(s)	279
CciI	TCATGA	1 cut(s)	1105
CfoI	GCGC	2 cut(s)	13, 561
Cfr13I	GGNCC	3 cut(s)	741, 742, 895
Csp6I	GTAC	5 cut(s)	566, 570, 618, 623, 951
CviAII	CATG	7 cut(s)	95, 278, 517, 586, 979, 998, 1106
CviQI	GTAC	5 cut(s)	566, 570, 618, 623, 951
DdeI	CTNAG	3 cut(s)	140, 164, 182
DpnI	GATC	6 cut(s)	71, 115, 521, 580, 933, 1104
DpnII	GATC	6 cut(s)	69, 113, 519, 578, 931, 1102
Eam1104I	CTCTTC	2 cut(s)	146, 765
EarI	CTCTTC	2 cut(s)	146, 765
EciI	GGCGGA	1 cut(s)	571
Ecl136II	GAGCTC	1 cut(s)	1035
Eco105I	TACGTA	1 cut(s)	569
Eco130I	CCWWGG	2 cut(s)	94, 1205
Eco24I	GRGCYC	2 cut(s)	745, 1037
Eco47I	GGWCC	1 cut(s)	895
Eco53kI	GAGCTC	1 cut(s)	1035
Eco91I	GGTNACC	1 cut(s)	1003
EcoICRI	GAGCTC	1 cut(s)	1035
EcoO109I	RGGNCCY	1 cut(s)	742
EcoO65I	GGTNACC	1 cut(s)	1003
EcoRII	CCWGG	1 cut(s)	412
EcoT14I	CCWWGG	2 cut(s)	94, 1205
EcoT22I	ATGCAT	1 cut(s)	279
EcoT38I	GRGCYC	2 cut(s)	745, 1037
ErhI	CCWWGG	2 cut(s)	94, 1205
FaeI	CATG	7 cut(s)	98, 281, 520, 589, 982, 1001, 1109
FatI	CATG	7 cut(s)	94, 277, 516, 585, 978, 997, 1105
FauI	CCCGC	1 cut(s)	140
FauNDI	CATATG	1 cut(s)	901
FbaI	TGATCA	2 cut(s)	519, 1102
FblI	GTMKAC	1 cut(s)	912
Fnu4HI	GCNGC	5 cut(s)	402, 543, 546, 867, 1092
FokI	GGATG	2 cut(s)	494, 847
FriOI	GRGCYC	2 cut(s)	745, 1037
Fsp4HI	GCNGC	5 cut(s)	402, 543, 546, 867, 1092
FspBI	CTAG	1 cut(s)	626
GlaI	GCGC	2 cut(s)	12, 560
GluI	GCNGC	5 cut(s)	402, 543, 546, 867, 1092
HaeII	RGCGCY	1 cut(s)	14
HaeIII	GGCC	1 cut(s)	743
HhaI	GCGC	2 cut(s)	13, 561
Hin1II	CATG	7 cut(s)	98, 281, 520, 589, 982, 1001, 1109
Hin6I	GCGC	2 cut(s)	11, 559
HinP1I	GCGC	2 cut(s)	11, 559
HindIII	AAGCTT	1 cut(s)	485
HinfI	GANTC	4 cut(s)	460, 677, 975, 1015
HphI	GGTGA	7 cut(s)	278, 472, 1015, 1070, 1071, 1196, 1207
Hpy166II	GTNNAC	3 cut(s)	51, 913, 1187
Hpy188I	TCNGA	1 cut(s)	183
Hpy188III	TCNNGA	2 cut(s)	73, 1106
Hpy8I	GTNNAC	3 cut(s)	51, 913, 1187
HpyAV	CCTTC	4 cut(s)	39, 95, 487, 1040
HpyCH4III	ACNGT	2 cut(s)	622, 917
HpyCH4IV	ACGT	2 cut(s)	568, 791
HpyCH4V	TGCA	8 cut(s)	131, 159, 244, 277, 367, 404, 709, 805
HpyF3I	CTNAG	3 cut(s)	140, 164, 182
HpySE526I	ACGT	2 cut(s)	568, 791
Hsp92II	CATG	7 cut(s)	98, 281, 520, 589, 982, 1001, 1109
HspAI	GCGC	2 cut(s)	11, 559
Ksp22I	TGATCA	2 cut(s)	519, 1102
Kzo9I	GATC	6 cut(s)	69, 113, 519, 578, 931, 1102
LmnI	GCTCC	3 cut(s)	286, 1032, 1050
LpnPI	CCDG	8 cut(s)	117, 399, 426, 430, 666, 700, 816, 867
Lsp1109I	GCAGC	4 cut(s)	388, 529, 532, 853
MaeI	CTAG	1 cut(s)	626
MaeII	ACGT	2 cut(s)	568, 791
MaeIII	GTNAC	3 cut(s)	1003, 1077, 1209
MalI	GATC	6 cut(s)	71, 115, 521, 580, 933, 1104
MboI	GATC	6 cut(s)	69, 113, 519, 578, 931, 1102
MflI	RGATCY	3 cut(s)	69, 113, 578
MhlI	GDGCHC	2 cut(s)	745, 1037
MluCI	AATT	4 cut(s)	175, 468, 924, 1169
MlyI	GAGTC	3 cut(s)	469, 984, 1024
Mph1103I	ATGCAT	1 cut(s)	279
MseI	TTAA	4 cut(s)	237, 360, 435, 683
MslI	CAYNNNNRTG	2 cut(s)	904, 1164
MspR9I	CCNGG	1 cut(s)	414
Mva1269I	GAATGC	2 cut(s)	133, 1093
MvaI	CCWGG	1 cut(s)	414
NcoI	CCATGG	1 cut(s)	94
NdeI	CATATG	1 cut(s)	901
NdeII	GATC	6 cut(s)	69, 113, 519, 578, 931, 1102
NlaIII	CATG	7 cut(s)	98, 281, 520, 589, 982, 1001, 1109
NlaIV	GGNNCC	3 cut(s)	743, 744, 897
NmuCI	GTSAC	2 cut(s)	1003, 1077
NsiI	ATGCAT	1 cut(s)	279
NspI	RCATGY	1 cut(s)	281
NspV	TTCGAA	1 cut(s)	533
PaeI	GCATGC	1 cut(s)	281
PagI	TCATGA	1 cut(s)	1105
PctI	GAATGC	2 cut(s)	133, 1093
PfeI	GAWTC	1 cut(s)	677
PkrI	GCNGC	5 cut(s)	403, 544, 547, 868, 1093
PleI	GAGTC	3 cut(s)	468, 983, 1023
PpsI	GAGTC	3 cut(s)	468, 983, 1023
Ppu21I	YACGTR	1 cut(s)	569
PsiI	TTATAA	1 cut(s)	660
Psp124BI	GAGCTC	1 cut(s)	1037
Psp1406I	AACGTT	1 cut(s)	791
Psp6I	CCWGG	1 cut(s)	412
PspEI	GGTNACC	1 cut(s)	1003
PspGI	CCWGG	1 cut(s)	412
PspN4I	GGNNCC	3 cut(s)	743, 744, 897
PspOMI	GGGCCC	1 cut(s)	741
PspPI	GGNCC	3 cut(s)	741, 742, 895
PsrI	GAACNNNNNNTAC	2 cut(s)	793, 825
PsuI	RGATCY	3 cut(s)	69, 113, 578
RsaI	GTAC	5 cut(s)	567, 571, 619, 624, 952
RsaNI	GTAC	5 cut(s)	566, 570, 618, 623, 951
RseI	CAYNNNNRTG	2 cut(s)	904, 1164
SacI	GAGCTC	1 cut(s)	1037
SaqAI	TTAA	4 cut(s)	237, 360, 435, 683
SatI	GCNGC	5 cut(s)	402, 543, 546, 867, 1092
Sau3AI	GATC	6 cut(s)	69, 113, 519, 578, 931, 1102
Sau96I	GGNCC	3 cut(s)	741, 742, 895
ScaI	AGTACT	1 cut(s)	624
SchI	GAGTC	3 cut(s)	469, 984, 1024
ScrFI	CCNGG	1 cut(s)	414
SduI	GDGCHC	2 cut(s)	745, 1037
SfuI	TTCGAA	1 cut(s)	533
SinI	GGWCC	1 cut(s)	895
SmiMI	CAYNNNNRTG	2 cut(s)	904, 1164
SmlI	CTYRAG	2 cut(s)	193, 316
SmoI	CTYRAG	2 cut(s)	193, 316
SnaBI	TACGTA	1 cut(s)	569
SphI	GCATGC	1 cut(s)	281
Sse9I	AATT	4 cut(s)	175, 468, 924, 1169
SsiI	CCGC	3 cut(s)	147, 582, 1092
SspI	AATATT	1 cut(s)	1042
SspMI	CTAG	1 cut(s)	626
SstI	GAGCTC	1 cut(s)	1037
StyD4I	CCNGG	1 cut(s)	412
StyI	CCWWGG	2 cut(s)	94, 1205
TaaI	ACNGT	2 cut(s)	622, 917
TaiI	ACGT	2 cut(s)	571, 794
TaqI	TCGA	3 cut(s)	533, 554, 1116
TasI	AATT	4 cut(s)	175, 468, 924, 1169
TatI	WGTACW	1 cut(s)	622
TauI	GCSGC	1 cut(s)	1094
TfiI	GAWTC	1 cut(s)	677
Tru1I	TTAA	4 cut(s)	237, 360, 435, 683
Tru9I	TTAA	4 cut(s)	237, 360, 435, 683
TscAI	CASTG	4 cut(s)	253, 376, 922, 1089
TseFI	GTSAC	2 cut(s)	1003, 1077
TseI	GCWGC	4 cut(s)	401, 542, 545, 866
Tsp45I	GTSAC	2 cut(s)	1003, 1077
TspDTI	ATGAA	6 cut(s)	506, 602, 774, 918, 1122, 1182
TspGWI	ACGGA	1 cut(s)	437
TspRI	CASTG	4 cut(s)	253, 376, 922, 1089
VpaK11BI	GGWCC	1 cut(s)	895
XapI	RAATTY	1 cut(s)	468
XceI	RCATGY	1 cut(s)	281
XmiI	GTMKAC	1 cut(s)	912
XspI	CTAG	1 cut(s)	626
ZrmI	AGTACT	1 cut(s)	624
Zsp2I	ATGCAT	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.