Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002296.1

Orthogroup ID

OG0007476

Physical Location & Seq

Genomic Coordinates Forward (+)

67767 .. 68885

Gene Structure 1119 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 993 bp

atggccagcagcaacaaccagagctcctcaagctcccatggtaaaaccctttacaaaattccttgttgggtcacaccggataagaaggagtttcacaatagaacaatggagttccttacgtggtaccggaagtctaaccgcaccttgccttccccctccaataaatgcatgaaggtcaaagatatgtcgcgcgaagaagtattggagaaaattagggaggagaagaaacgtattgaagatgattgttcctttgagttggttgatcaatcggcctccaacaaaatgttcgatggcggtgcccaacgtttagttctaaaagacggcaaaaaactttacaagccgcaaaaggctacaaaagaagcctatatatggtcgtgttctaaatgttgcactcgtaccagcagcctcaatgtcattgcaggagatagaggctttgtcataggtccttttactttcaatctagtcggaagatcggtcgattgtaacagtgaatttggtccagataataaggtcagggttggacaagtcgttccgccttgtataagttctgttagtgatatgaagaacaatggtgcaaagtacgtgttaggagtggaaagtgtttctgcttatcaaagattgacgggggacaactttcataatgattataagtgtataatcatgaccggaaagggaatgtctgatctagcacgtagagaattcgcaaagtatataatggacacgttcgagattccaatatttctcctctcagattctgattcatggggcatcgaaatttatgcagtctttaaatatggctcagaaagtatggcatttgatagtgaaaatttggctaacccattggtacattggctgggtgtctggccaaccgacttaaccacacttaaaacaccatccgagaagttgagttgcgatgacctgagaaaagcaagaaaattgttgaaggagtttgtaacaagtgatgagatgctggtgaaccagtggaccacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000228 GO:0000280 GO:0000706 GO:0000729 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0003916 GO:0003918 GO:0004518 GO:0004519 GO:0004520 GO:0004536 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006310 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0006996 GO:0007049 GO:0007127 GO:0007131 GO:0008094 GO:0008134 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016462 GO:0016787 GO:0016788 GO:0016817 GO:0016818 GO:0016853 GO:0016887 GO:0016889 GO:0016894 GO:0017111 GO:0022402 GO:0022414 GO:0030957 GO:0031974 GO:0031981 GO:0033554 GO:0034641 GO:0035825 GO:0042138 GO:0042623 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044260 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0046983 GO:0048285 GO:0050896 GO:0051321 GO:0051716 GO:0061505 GO:0061982 GO:0070013 GO:0071704 GO:0071840 GO:0090304 GO:0090305 GO:0097159 GO:0140013 GO:0140097 GO:1901360 GO:1901363 GO:1903046

KEGG Pathways

Metabolic & Signaling

ko04113 map04113

Pfam Domains

Protein Families

TP6A_N

Protein Analysis

330

Amino Acids

37.45

Weight (kDa)

8.55

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TOP6A-Spo11_Toprim	PF21180	194 - 319	6.6e-37	Topoisomerase 6 subunit A/Spo11, Toprim domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007476)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g02062 FvH4_7g23893
rosa_chinensis	RchiOBHm_Chr3g0447681 RchiOBHm_Chr5g0062071
rosa_laevigata	RLG00000015854 RLG00000025979 RLG00000035529
rosa_multiflora	Rmu_sc0002296.1_g000012 Rmu_sc0006064.1_g000010 Rmu_sc0017669.1_g000013
rosa_roxburghii	Rroxscaffold_2G00153710
rosa_rugosa	Rorug01G0475300 Rorug05G0345800
rosa_samantha	Rh2BG027000 Rh2BG028800 Rh3AG004200 Rh3BG003800 Rh3CG004200 Rh3DG004100 Rh5AG407400 Rh5BG420600 Rh5BG420700 Rh5CG444600 Rh5CG444800 Rh5DG435800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	648
Acc65I	GGTACC	1 cut(s)	123
AccB1I	GGYRCC	2 cut(s)	123, 296
AccII	CGCG	2 cut(s)	190, 192
AciI	CCGC	4 cut(s)	139, 294, 341, 533
AclI	AACGTT	1 cut(s)	304
AcoI	YGGCCR	2 cut(s)	3, 863
AcsI	RAATTY	5 cut(s)	57, 491, 698, 774, 826
AfaI	GTAC	4 cut(s)	125, 397, 581, 846
AfiI	CCNNNNNNNGG	1 cut(s)	369
AflIII	ACRYGT	2 cut(s)	582, 720
AgsI	TTSAA	3 cut(s)	236, 457, 943
AjuI	GAANNNNNNNTTGG	4 cut(s)	269, 294, 301, 326
AloI	GAACNNNNNNTCC	2 cut(s)	513, 545
AluBI	AGCT	2 cut(s)	24, 33
AluI	AGCT	2 cut(s)	24, 33
Alw21I	GWGCWC	1 cut(s)	26
AlwNI	CAGNNNCTG	1 cut(s)	755
AoxI	GGCC	3 cut(s)	3, 270, 863
ApeKI	GCWGC	2 cut(s)	9, 402
ApoI	RAATTY	5 cut(s)	57, 491, 698, 774, 826
Asp718I	GGTACC	1 cut(s)	123
AspLEI	GCGC	1 cut(s)	192
AspS9I	GGNCC	3 cut(s)	443, 497, 984
AsuHPI	GGTGA	1 cut(s)	985
AvaII	GGWCC	3 cut(s)	443, 497, 984
BaeGI	GKGCMC	1 cut(s)	301
BalI	TGGCCA	2 cut(s)	5, 865
BanI	GGYRCC	2 cut(s)	123, 296
BanII	GRGCYC	1 cut(s)	26
Bbv12I	GWGCWC	1 cut(s)	26
BbvI	GCAGC	2 cut(s)	21, 414
BccI	CCATC	2 cut(s)	284, 901
BceAI	ACGGC	1 cut(s)	337
BcgI	CGANNNNNNTGC	4 cut(s)	278, 312, 761, 795
BclI	TGATCA	1 cut(s)	262
BfaI	CTAG	2 cut(s)	461, 686
BisI	GCNGC	3 cut(s)	10, 341, 403
BlsI	GCNGC	3 cut(s)	11, 342, 404
Bme18I	GGWCC	3 cut(s)	443, 497, 984
BmgT120I	GGNCC	3 cut(s)	443, 497, 984
BmiI	GGNNCC	2 cut(s)	125, 298
BmsI	GCATC	2 cut(s)	777, 957
BpuEI	CTTGAG	1 cut(s)	13
BsaAI	YACGTR	3 cut(s)	120, 583, 692
BsaJI	CCNNGG	1 cut(s)	37
BsaWI	WCCGGW	3 cut(s)	76, 126, 665
BsaXI	ACNNNNNCTCC	2 cut(s)	8, 38
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse1I	ACTGG	1 cut(s)	979
Bse3DI	GCAATG	1 cut(s)	414
BseDI	CCNNGG	1 cut(s)	37
BseGI	GGATG	1 cut(s)	893
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMI	GCAATG	1 cut(s)	414
BseMII	CTCAG	3 cut(s)	762, 813, 911
BseNI	ACTGG	1 cut(s)	979
BseRI	GAGGAG	3 cut(s)	16, 233, 734
BseSI	GKGCMC	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	21, 414
BseYI	CCCAGC	1 cut(s)	853
Bsh1236I	CGCG	2 cut(s)	190, 192
Bsh1285I	CGRYCG	1 cut(s)	477
BshFI	GGCC	3 cut(s)	5, 272, 865
BshNI	GGYRCC	2 cut(s)	123, 296
BsiEI	CGRYCG	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	26
BsiSI	CCGG	3 cut(s)	77, 127, 666
BslFI	GGGAC	1 cut(s)	641
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmFI	GGGAC	1 cut(s)	641
BsnI	GGCC	3 cut(s)	5, 272, 865
Bsp1286I	GDGCHC	2 cut(s)	26, 301
Bsp143I	GATC	3 cut(s)	262, 470, 682
Bsp19I	CCATGG	1 cut(s)	37
BspACI	CCGC	4 cut(s)	139, 294, 341, 533
BspANI	GGCC	3 cut(s)	5, 272, 865
BspCNI	CTCAG	3 cut(s)	761, 812, 912
BspFNI	CGCG	2 cut(s)	190, 192
BspHI	TCATGA	1 cut(s)	660
BspLI	GGNNCC	2 cut(s)	125, 298
BspT107I	GGYRCC	2 cut(s)	123, 296
BsrDI	GCAATG	1 cut(s)	414
BsrI	ACTGG	1 cut(s)	979
BssECI	CCNNGG	1 cut(s)	37
BssMI	GATC	3 cut(s)	262, 470, 682
BssT1I	CCWWGG	1 cut(s)	37
Bst4CI	ACNGT	1 cut(s)	488
BstBAI	YACGTR	3 cut(s)	120, 583, 692
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	748, 799, 920
BstDSI	CCRYGG	1 cut(s)	37
BstF5I	GGATG	1 cut(s)	893
BstFNI	CGCG	2 cut(s)	190, 192
BstHHI	GCGC	1 cut(s)	192
BstKTI	GATC	3 cut(s)	265, 473, 685
BstMBI	GATC	3 cut(s)	262, 470, 682
BstMCI	CGRYCG	1 cut(s)	477
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstSLI	GKGCMC	1 cut(s)	301
BstUI	CGCG	2 cut(s)	190, 192
BstV1I	GCAGC	2 cut(s)	21, 414
BsuRI	GGCC	3 cut(s)	5, 272, 865
BtgI	CCRYGG	1 cut(s)	37
BtgZI	GCGATG	1 cut(s)	927
BtsCI	GGATG	1 cut(s)	893
BtsIMutI	CAGTG	2 cut(s)	493, 986
Cac8I	GCNNGC	1 cut(s)	7
CaiI	CAGNNNCTG	1 cut(s)	755
CciI	TCATGA	1 cut(s)	660
CfoI	GCGC	1 cut(s)	192
Cfr13I	GGNCC	3 cut(s)	443, 497, 984
Csp6I	GTAC	4 cut(s)	124, 396, 580, 845
CviAII	CATG	5 cut(s)	38, 169, 661, 762, 990
CviQI	GTAC	4 cut(s)	124, 396, 580, 845
DdeI	CTNAG	3 cut(s)	748, 799, 920
DpnI	GATC	3 cut(s)	264, 472, 684
DpnII	GATC	3 cut(s)	262, 470, 682
DraI	TTTAAA	1 cut(s)	790
EaeI	YGGCCR	2 cut(s)	3, 863
EciI	GGCGGA	1 cut(s)	522
Ecl136II	GAGCTC	1 cut(s)	24
Eco130I	CCWWGG	1 cut(s)	37
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	3 cut(s)	443, 497, 984
Eco53kI	GAGCTC	1 cut(s)	24
EcoICRI	GAGCTC	1 cut(s)	24
EcoO109I	RGGNCCY	1 cut(s)	443
EcoRI	GAATTC	1 cut(s)	698
EcoT14I	CCWWGG	1 cut(s)	37
EcoT22I	ATGCAT	1 cut(s)	170
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	37
FaeI	CATG	5 cut(s)	41, 172, 664, 765, 993
FaqI	GGGAC	1 cut(s)	641
FatI	CATG	5 cut(s)	37, 168, 660, 761, 989
FbaI	TGATCA	1 cut(s)	262
Fnu4HI	GCNGC	3 cut(s)	10, 341, 403
FokI	GGATG	1 cut(s)	880
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	3 cut(s)	10, 341, 403
FspBI	CTAG	2 cut(s)	461, 686
GlaI	GCGC	1 cut(s)	191
GluI	GCNGC	3 cut(s)	10, 341, 403
GsaI	CCCAGC	1 cut(s)	857
HaeIII	GGCC	3 cut(s)	5, 272, 865
HapII	CCGG	3 cut(s)	77, 127, 666
HhaI	GCGC	1 cut(s)	192
Hin1II	CATG	5 cut(s)	41, 172, 664, 765, 993
Hin6I	GCGC	1 cut(s)	190
HinP1I	GCGC	1 cut(s)	190
HinfI	GANTC	3 cut(s)	730, 752, 758
HpaII	CCGG	3 cut(s)	77, 127, 666
HphI	GGTGA	1 cut(s)	985
Hpy166II	GTNNAC	2 cut(s)	976, 984
Hpy188I	TCNGA	6 cut(s)	467, 682, 751, 757, 802, 898
Hpy188III	TCNNGA	3 cut(s)	500, 661, 727
Hpy8I	GTNNAC	2 cut(s)	976, 984
HpyAV	CCTTC	4 cut(s)	79, 159, 166, 937
HpyCH4III	ACNGT	1 cut(s)	488
HpyCH4IV	ACGT	6 cut(s)	119, 229, 304, 582, 691, 722
HpyCH4V	TGCA	5 cut(s)	168, 390, 419, 575, 782
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	3 cut(s)	748, 799, 920
HpySE526I	ACGT	6 cut(s)	119, 229, 304, 582, 691, 722
Hsp92II	CATG	5 cut(s)	41, 172, 664, 765, 993
HspAI	GCGC	1 cut(s)	190
KpnI	GGTACC	1 cut(s)	127
Ksp22I	TGATCA	1 cut(s)	262
Kzo9I	GATC	3 cut(s)	262, 470, 682
LmnI	GCTCC	2 cut(s)	29, 38
Lsp1109I	GCAGC	2 cut(s)	21, 414
LweI	GCATC	2 cut(s)	777, 957
MaeI	CTAG	2 cut(s)	461, 686
MaeII	ACGT	6 cut(s)	119, 229, 304, 582, 691, 722
MaeIII	GTNAC	3 cut(s)	70, 482, 952
MalI	GATC	3 cut(s)	264, 472, 684
MboI	GATC	3 cut(s)	262, 470, 682
MboII	GAAGA	5 cut(s)	206, 235, 248, 480, 574
MhlI	GDGCHC	2 cut(s)	26, 301
MlsI	TGGCCA	2 cut(s)	5, 865
MluCI	AATT	7 cut(s)	57, 210, 491, 698, 774, 826, 935
MluNI	TGGCCA	2 cut(s)	5, 865
MmeI	TCCRAC	3 cut(s)	300, 445, 499
MnlI	CCTC	7 cut(s)	37, 166, 211, 283, 416, 422, 755
Mox20I	TGGCCA	2 cut(s)	5, 865
Mph1103I	ATGCAT	1 cut(s)	170
MscI	TGGCCA	2 cut(s)	5, 865
MseI	TTAA	3 cut(s)	789, 875, 885
Msp20I	TGGCCA	2 cut(s)	5, 865
MspI	CCGG	3 cut(s)	77, 127, 666
MvnI	CGCG	2 cut(s)	190, 192
MwoI	GCNNNNNNNGC	1 cut(s)	30
NcoI	CCATGG	1 cut(s)	37
NdeII	GATC	3 cut(s)	262, 470, 682
NlaIII	CATG	5 cut(s)	41, 172, 664, 765, 993
NlaIV	GGNNCC	2 cut(s)	125, 298
NmuCI	GTSAC	1 cut(s)	70
NsiI	ATGCAT	1 cut(s)	170
PagI	TCATGA	1 cut(s)	660
PfeI	GAWTC	3 cut(s)	730, 752, 758
PkrI	GCNGC	3 cut(s)	11, 342, 404
Ppu21I	YACGTR	3 cut(s)	120, 583, 692
PpuMI	RGGWCCY	1 cut(s)	443
PsiI	TTATAA	1 cut(s)	648
Psp124BI	GAGCTC	1 cut(s)	26
Psp1406I	AACGTT	1 cut(s)	304
Psp5II	RGGWCCY	1 cut(s)	443
PspFI	CCCAGC	1 cut(s)	853
PspN4I	GGNNCC	2 cut(s)	125, 298
PspPI	GGNCC	3 cut(s)	443, 497, 984
PspPPI	RGGWCCY	1 cut(s)	443
PstNI	CAGNNNCTG	1 cut(s)	755
RsaI	GTAC	4 cut(s)	125, 397, 581, 846
RsaNI	GTAC	4 cut(s)	124, 396, 580, 845
SacI	GAGCTC	1 cut(s)	26
SaqAI	TTAA	3 cut(s)	789, 875, 885
SatI	GCNGC	3 cut(s)	10, 341, 403
Sau3AI	GATC	3 cut(s)	262, 470, 682
Sau96I	GGNCC	3 cut(s)	443, 497, 984
SduI	GDGCHC	2 cut(s)	26, 301
SfaNI	GCATC	2 cut(s)	777, 957
SinI	GGWCC	3 cut(s)	443, 497, 984
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	7 cut(s)	57, 210, 491, 698, 774, 826, 935
SsiI	CCGC	4 cut(s)	139, 294, 341, 533
SspI	AATATT	1 cut(s)	738
SspMI	CTAG	2 cut(s)	461, 686
SstI	GAGCTC	1 cut(s)	26
StyI	CCWWGG	1 cut(s)	37
TaaI	ACNGT	1 cut(s)	488
TaiI	ACGT	6 cut(s)	122, 232, 307, 585, 694, 725
TaqI	TCGA	4 cut(s)	288, 477, 726, 771
TaqII	GACCGA	1 cut(s)	463
TasI	AATT	7 cut(s)	57, 210, 491, 698, 774, 826, 935
TauI	GCSGC	1 cut(s)	343
TfiI	GAWTC	3 cut(s)	730, 752, 758
Tru1I	TTAA	3 cut(s)	789, 875, 885
Tru9I	TTAA	3 cut(s)	789, 875, 885
TscAI	CASTG	2 cut(s)	493, 986
TseFI	GTSAC	1 cut(s)	70
TseI	GCWGC	2 cut(s)	9, 402
Tsp45I	GTSAC	1 cut(s)	70
TspDTI	ATGAA	4 cut(s)	185, 575, 626, 750
TspRI	CASTG	2 cut(s)	493, 986
VpaK11BI	GGWCC	3 cut(s)	443, 497, 984
XapI	RAATTY	5 cut(s)	57, 491, 698, 774, 826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	846
XspI	CTAG	2 cut(s)	461, 686
Zsp2I	ATGCAT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.