Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002311.1

Orthogroup ID

OG0014699

Physical Location & Seq

Genomic Coordinates Reverse (-)

93789 .. 96126

Gene Structure 2338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1632 bp

atgtcttctccctcaaagagtccaactatggagcttgttcagcaaagtcatccgcatcccaaggcttctgttacccaagttactgcttacggtggtagccctagtcctataaagcaactgcaaccaattacaaatgaagctgatcgcaaggcttcttttaccgggacgcatgatgccattgttgtgtcctctgttgcagcagaggtcgatcagttttccgacgtggaagaggagctgaacaatttcaataacaatcagaaaaggcagcaggatgcttttctgaacagttttccacctgggtataggttcaatcctcgtgatgacgaacttgttcggtattacctgcagaagaagatcatggacgagccattgccccccaacaagatcatggaagttaacctctaccgccacaatcccgagacgcttgctgaaaaagaatggtacttctttactccaagggaccggaagtatcgcaatggatttcgaccaaatagggcagctggtgatggatattggaaggccacaggagctgacaaaacaataaggtctggcaatgtagaggttgggtgtagaaaggctctcgttttttacaggggtaaacctccaaagggtaaaaagacaaattggatcatgcatgagtatcgagtccctgattcccctgattctcgtcctcccaaaaggactgaaaatgacatgaggttggataactgggtgctgtgtagaatttataagaaagctgataacaagaacaacaaaagccagagccgaaatcaggatcctgttgaagaaagtatctctacatcactaccagataacatggacatggagatggagacgaacggtcaagttgataaccctcaagcattggagtctgaaaaggcatacctttaccctattgttcatccaccattggagtttgacagggcgtatcataattatgcatttccttacccgggtgggcagcctctatgtgctctagttaacaacaatatgaacaacatgcttcatcaccaccgattccaaccagtctctttgaattctggggatagttatgcaaatatggggcaaatgcaacaggcttgtggcacttattcaccaatgcaatttcctgatcaaaactgtggtgtgcaattttctgatcaaaagcgtggtgtgcaattttcggaccaaaggtttattatgcaaccagttgatgtcacatcaggatcaatggtatgtacagatgatcaaaagtgtggtgtccaatttccagacgaaaagtttattatgcaatcacttgatgtcacatcagaatcaatggtatgtacagatgaggcatgttctgatcagaaatgtggtaggcaatttccggataaaaaatttattgtgcaatcacctgatggtagcccacaaccaatgacattttctcatgaaaaaagtggaaagagtggccaaccagatgatgcagttgatagtagaccatcatcagtgcctcccttacctgatcaaaagagtactcaacaaggaattggtaaacctctattaccaccatctgatcaaggtctacgatacgtagaagaatcgaatgaagatcataatctcatgtttggttatccaccatttgtgtctttggaaactttttcatggccctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0006355 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009628 GO:0009889 GO:0010035 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042221 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1901700 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

NAM

Protein Analysis

543

Amino Acids

61.58

Weight (kDa)

5.73

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAM	PF02365	98 - 216	4.8e-42	No apical meristem (NAM) protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014699)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g28570 FvH4_5g29430
malus_domestica	MD03G1172900.v1.1 MD11G1190900.v1.1
prunus_persica	Prupe.4G253600_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0052571
rosa_laevigata	RLG00000034811
rosa_multiflora	Rmu_sc0000694.1_g000026 Rmu_sc0002311.1_g000013
rosa_roxburghii	Rroxscaffold_1G00028470 Rroxscaffold_4G00296130
rosa_rugosa	Rorug05G0270800
rosa_samantha	Rh5AG343800 Rh5BG354500 Rh5CG380300 Rh5DG370000
rosa_wichuraiana	Rw5G032470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	729
Acc36I	ACCTGC	1 cut(s)	351
AccI	GTMKAC	2 cut(s)	1456, 1543
AccIII	TCCGGA	1 cut(s)	1348
AciI	CCGC	2 cut(s)	53, 406
AclWI	GGATC	4 cut(s)	635, 770, 783, 1213
AcoI	YGGCCR	1 cut(s)	1429
AcsI	RAATTY	3 cut(s)	723, 1036, 1358
AfaI	GTAC	4 cut(s)	443, 1219, 1306, 1495
AfiI	CCNNNNNNNGG	3 cut(s)	608, 772, 953
AgsI	TTSAA	4 cut(s)	247, 310, 785, 1036
AhdI	GACNNNNNGTC	1 cut(s)	840
AjiI	CACGTC	1 cut(s)	223
AjnI	CCWGG	1 cut(s)	295
AjuI	GAANNNNNNNTTGG	2 cut(s)	1387, 1419
AluBI	AGCT	6 cut(s)	34, 140, 235, 500, 530, 737
AluI	AGCT	6 cut(s)	34, 140, 235, 500, 530, 737
Alw21I	GWGCWC	1 cut(s)	976
Alw26I	GTCTC	3 cut(s)	413, 827, 1033
AlwI	GGATC	4 cut(s)	635, 770, 783, 1213
AlwNI	CAGNNNCTG	1 cut(s)	530
Ama87I	CYCGRG	2 cut(s)	416, 952
Aor13HI	TCCGGA	1 cut(s)	1348
AoxI	GGCC	3 cut(s)	519, 1429, 1625
ApeKI	GCWGC	4 cut(s)	197, 265, 497, 961
ApoI	RAATTY	3 cut(s)	723, 1036, 1358
Asp700I	GAANNNNTTC	2 cut(s)	242, 330
AspS9I	GGNCC	3 cut(s)	460, 1165, 1626
AsuC2I	CCSGG	3 cut(s)	163, 953, 954
AsuHPI	GGTGA	4 cut(s)	515, 1001, 1086, 1365
AvaI	CYCGRG	2 cut(s)	416, 952
AvaII	GGWCC	2 cut(s)	460, 1165
BalI	TGGCCA	1 cut(s)	1431
BamHI	GGATCC	1 cut(s)	775
BauI	CACGAG	1 cut(s)	315
Bbv12I	GWGCWC	1 cut(s)	976
BbvI	GCAGC	4 cut(s)	209, 277, 509, 973
BccI	CCATC	5 cut(s)	500, 823, 1373, 1468, 1537
BcgI	CGANNNNNNTGC	4 cut(s)	407, 441, 623, 657
BciT130I	CCWGG	1 cut(s)	297
BclI	TGATCA	6 cut(s)	1111, 1138, 1225, 1324, 1483, 1534
BcnI	CCSGG	3 cut(s)	163, 953, 954
BcoDI	GTCTC	3 cut(s)	413, 827, 1033
BfaI	CTAG	2 cut(s)	102, 977
BfmI	CTRYAG	1 cut(s)	344
BfuAI	ACCTGC	1 cut(s)	351
BisI	GCNGC	4 cut(s)	198, 266, 498, 962
BlsI	GCNGC	4 cut(s)	199, 267, 499, 963
BmcAI	AGTACT	1 cut(s)	1495
Bme1390I	CCNGG	4 cut(s)	163, 297, 953, 954
Bme18I	GGWCC	2 cut(s)	460, 1165
BmeRI	GACNNNNNGTC	1 cut(s)	840
BmeT110I	CYCGRG	2 cut(s)	416, 952
BmgBI	CACGTC	1 cut(s)	223
BmgT120I	GGNCC	3 cut(s)	460, 1165, 1626
BmiI	GGNNCC	2 cut(s)	461, 777
BmrFI	CCNGG	4 cut(s)	163, 297, 953, 954
BmrI	ACTGGG	1 cut(s)	718
BmsI	GCATC	4 cut(s)	64, 163, 262, 1432
BmuI	ACTGGG	1 cut(s)	718
BpuEI	CTTGAG	1 cut(s)	843
BpuMI	CCSGG	3 cut(s)	163, 953, 954
BsaAI	YACGTR	1 cut(s)	1552
BsaBI	GATNNNNATC	1 cut(s)	1575
BsaJI	CCNNGG	4 cut(s)	60, 296, 455, 952
BsaWI	WCCGGW	2 cut(s)	462, 1348
Bsc4I	CCNNNNNNNGG	3 cut(s)	608, 772, 953
Bse1I	ACTGG	3 cut(s)	713, 1025, 1187
Bse3DI	GCAATG	3 cut(s)	368, 481, 559
Bse8I	GATNNNNATC	1 cut(s)	1575
BseAI	TCCGGA	1 cut(s)	1348
BseBI	CCWGG	1 cut(s)	297
BseDI	CCNNGG	4 cut(s)	60, 296, 455, 952
BseGI	GGATG	4 cut(s)	49, 55, 277, 901
BseJI	GATNNNNATC	1 cut(s)	1575
BseLI	CCNNNNNNNGG	3 cut(s)	608, 772, 953
BseMI	GCAATG	3 cut(s)	368, 481, 559
BseNI	ACTGG	3 cut(s)	713, 1025, 1187
BseRI	GAGGAG	1 cut(s)	245
BseXI	GCAGC	4 cut(s)	209, 277, 509, 973
BshFI	GGCC	3 cut(s)	521, 1431, 1627
BsiHKAI	GWGCWC	1 cut(s)	976
BsiHKCI	CYCGRG	2 cut(s)	416, 952
BsiSI	CCGG	4 cut(s)	162, 463, 953, 1349
BslFI	GGGAC	3 cut(s)	178, 473, 632
BslI	CCNNNNNNNGG	3 cut(s)	608, 772, 953
BsmAI	GTCTC	3 cut(s)	413, 827, 1033
BsmBI	CGTCTC	2 cut(s)	413, 827
BsmFI	GGGAC	3 cut(s)	178, 473, 632
BsnI	GGCC	3 cut(s)	521, 1431, 1627
BsoBI	CYCGRG	2 cut(s)	416, 952
Bsp1286I	GDGCHC	1 cut(s)	976
Bsp13I	TCCGGA	1 cut(s)	1348
Bsp1407I	TGTACA	2 cut(s)	1217, 1304
BspACI	CCGC	2 cut(s)	53, 406
BspANI	GGCC	3 cut(s)	521, 1431, 1627
BspEI	TCCGGA	1 cut(s)	1348
BspHI	TCATGA	1 cut(s)	1408
BspLI	GGNNCC	2 cut(s)	461, 777
BspMAI	CTGCAG	1 cut(s)	348
BspMI	ACCTGC	1 cut(s)	351
BspPI	GGATC	4 cut(s)	635, 770, 783, 1213
BsrDI	GCAATG	3 cut(s)	368, 481, 559
BsrGI	TGTACA	2 cut(s)	1217, 1304
BsrI	ACTGG	3 cut(s)	713, 1025, 1187
BssECI	CCNNGG	4 cut(s)	60, 296, 455, 952
BssSI	CACGAG	1 cut(s)	315
BssT1I	CCWWGG	2 cut(s)	60, 455
Bst2BI	CACGAG	1 cut(s)	315
Bst2UI	CCWGG	1 cut(s)	297
Bst4CI	ACNGT	4 cut(s)	92, 287, 842, 1121
Bst6I	CTCTTC	1 cut(s)	222
BstAUI	TGTACA	2 cut(s)	1217, 1304
BstBAI	YACGTR	1 cut(s)	1552
BstC8I	GCNNGC	1 cut(s)	426
BstF5I	GGATG	4 cut(s)	49, 55, 277, 901
BstMAI	GTCTC	3 cut(s)	413, 827, 1033
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 527, 1153
BstNI	CCWGG	1 cut(s)	297
BstNSI	RCATGY	2 cut(s)	1003, 1320
BstSCI	CCNGG	4 cut(s)	161, 295, 951, 952
BstSFI	CTRYAG	1 cut(s)	344
BstSNI	TACGTA	1 cut(s)	1552
BstV1I	GCAGC	4 cut(s)	209, 277, 509, 973
BstX2I	RGATCY	1 cut(s)	775
BstYI	RGATCY	1 cut(s)	775
BsuRI	GGCC	3 cut(s)	521, 1431, 1627
BtrI	CACGTC	1 cut(s)	223
BtsCI	GGATG	4 cut(s)	49, 55, 277, 901
BtsIMutI	CAGTG	1 cut(s)	1473
BveI	ACCTGC	1 cut(s)	351
Cac8I	GCNNGC	1 cut(s)	426
CaiI	CAGNNNCTG	1 cut(s)	530
CciI	TCATGA	1 cut(s)	1408
Cfr13I	GGNCC	3 cut(s)	460, 1165, 1626
Cfr9I	CCCGGG	1 cut(s)	952
CseI	GACGC	2 cut(s)	175, 430
Csp6I	GTAC	4 cut(s)	442, 1218, 1305, 1494
CviQI	GTAC	4 cut(s)	442, 1218, 1305, 1494
DriI	GACNNNNNGTC	1 cut(s)	840
EaeI	YGGCCR	1 cut(s)	1429
Eam1104I	CTCTTC	1 cut(s)	222
Eam1105I	GACNNNNNGTC	1 cut(s)	840
EarI	CTCTTC	1 cut(s)	222
Eco105I	TACGTA	1 cut(s)	1552
Eco130I	CCWWGG	2 cut(s)	60, 455
Eco47I	GGWCC	2 cut(s)	460, 1165
Eco88I	CYCGRG	2 cut(s)	416, 952
EcoRI	GAATTC	1 cut(s)	1036
EcoRII	CCWGG	1 cut(s)	295
EcoT14I	CCWWGG	2 cut(s)	60, 455
EcoT22I	ATGCAT	2 cut(s)	636, 943
ErhI	CCWWGG	2 cut(s)	60, 455
Esp3I	CGTCTC	2 cut(s)	413, 827
FaqI	GGGAC	3 cut(s)	178, 473, 632
FbaI	TGATCA	6 cut(s)	1111, 1138, 1225, 1324, 1483, 1534
FblI	GTMKAC	2 cut(s)	1456, 1543
Fnu4HI	GCNGC	4 cut(s)	198, 266, 498, 962
FokI	GGATG	4 cut(s)	36, 42, 284, 888
Fsp4HI	GCNGC	4 cut(s)	198, 266, 498, 962
FspBI	CTAG	2 cut(s)	102, 977
GluI	GCNGC	4 cut(s)	198, 266, 498, 962
HaeIII	GGCC	3 cut(s)	521, 1431, 1627
HapII	CCGG	4 cut(s)	162, 463, 953, 1349
HgaI	GACGC	2 cut(s)	175, 430
HincII	GTYRAC	2 cut(s)	397, 982
HindII	GTYRAC	2 cut(s)	397, 982
HinfI	GANTC	8 cut(s)	19, 645, 653, 662, 869, 1017, 1292, 1559
HpaI	GTTAAC	2 cut(s)	397, 982
HpaII	CCGG	4 cut(s)	162, 463, 953, 1349
HphI	GGTGA	4 cut(s)	515, 1001, 1086, 1365
Hpy166II	GTNNAC	6 cut(s)	397, 599, 982, 1457, 1514, 1544
Hpy188III	TCNNGA	8 cut(s)	317, 416, 773, 1109, 1203, 1250, 1349, 1409
Hpy8I	GTNNAC	6 cut(s)	397, 599, 982, 1457, 1514, 1544
Hpy99I	CGWCG	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	511
HpyCH4III	ACNGT	4 cut(s)	92, 287, 842, 1121
HpyCH4IV	ACGT	2 cut(s)	222, 1551
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 527, 1153
HpySE526I	ACGT	2 cut(s)	222, 1551
Kpn2I	TCCGGA	1 cut(s)	1348
Ksp22I	TGATCA	6 cut(s)	1111, 1138, 1225, 1324, 1483, 1534
KspAI	GTTAAC	2 cut(s)	397, 982
LmnI	GCTCC	3 cut(s)	31, 232, 527
Lsp1109I	GCAGC	4 cut(s)	209, 277, 509, 973
LweI	GCATC	4 cut(s)	64, 163, 262, 1432
MaeI	CTAG	2 cut(s)	102, 977
MaeII	ACGT	2 cut(s)	222, 1551
MaeIII	GTNAC	4 cut(s)	70, 79, 1195, 1282
MboII	GAAGA	6 cut(s)	239, 361, 364, 797, 1568, 1580
MflI	RGATCY	1 cut(s)	775
MhlI	GDGCHC	1 cut(s)	976
MlsI	TGGCCA	1 cut(s)	1431
MluNI	TGGCCA	1 cut(s)	1431
MlyI	GAGTC	3 cut(s)	28, 654, 878
MmeI	TCCRAC	4 cut(s)	47, 243, 681, 1045
Mox20I	TGGCCA	1 cut(s)	1431
Mph1103I	ATGCAT	2 cut(s)	636, 943
MroI	TCCGGA	1 cut(s)	1348
MroXI	GAANNNNTTC	2 cut(s)	242, 330
MscI	TGGCCA	1 cut(s)	1431
MseI	TTAA	2 cut(s)	396, 981
MslI	CAYNNNNRTG	4 cut(s)	182, 821, 827, 936
Msp20I	TGGCCA	1 cut(s)	1431
MspA1I	CMGCKG	1 cut(s)	500
MspI	CCGG	4 cut(s)	162, 463, 953, 1349
MspR9I	CCNGG	4 cut(s)	163, 297, 953, 954
MvaI	CCWGG	1 cut(s)	297
MwoI	GCNNNNNNNGC	3 cut(s)	40, 527, 1153
NciI	CCSGG	3 cut(s)	163, 953, 954
NlaIV	GGNNCC	2 cut(s)	461, 777
NmuCI	GTSAC	2 cut(s)	1195, 1282
NsiI	ATGCAT	2 cut(s)	636, 943
NspI	RCATGY	2 cut(s)	1003, 1320
PagI	TCATGA	1 cut(s)	1408
PdmI	GAANNNNTTC	2 cut(s)	242, 330
PfeI	GAWTC	5 cut(s)	653, 662, 1017, 1292, 1559
PkrI	GCNGC	4 cut(s)	199, 267, 499, 963
PleI	GAGTC	3 cut(s)	27, 653, 877
PpsI	GAGTC	3 cut(s)	27, 653, 877
Ppu21I	YACGTR	1 cut(s)	1552
PsiI	TTATAA	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	295
PspGI	CCWGG	1 cut(s)	295
PspN4I	GGNNCC	2 cut(s)	461, 777
PspPI	GGNCC	3 cut(s)	460, 1165, 1626
PstI	CTGCAG	1 cut(s)	348
PstNI	CAGNNNCTG	1 cut(s)	530
PsuI	RGATCY	1 cut(s)	775
PvuII	CAGCTG	1 cut(s)	500
RsaI	GTAC	4 cut(s)	443, 1219, 1306, 1495
RsaNI	GTAC	4 cut(s)	442, 1218, 1305, 1494
RseI	CAYNNNNRTG	4 cut(s)	182, 821, 827, 936
SaqAI	TTAA	2 cut(s)	396, 981
SatI	GCNGC	4 cut(s)	198, 266, 498, 962
Sau96I	GGNCC	3 cut(s)	460, 1165, 1626
ScaI	AGTACT	1 cut(s)	1495
SchI	GAGTC	3 cut(s)	28, 654, 878
ScrFI	CCNGG	4 cut(s)	163, 297, 953, 954
SduI	GDGCHC	1 cut(s)	976
SfaNI	GCATC	4 cut(s)	64, 163, 262, 1432
SfcI	CTRYAG	1 cut(s)	344
SinI	GGWCC	2 cut(s)	460, 1165
SmaI	CCCGGG	1 cut(s)	954
SmiMI	CAYNNNNRTG	4 cut(s)	182, 821, 827, 936
SmlI	CTYRAG	1 cut(s)	858
SmoI	CTYRAG	1 cut(s)	858
SnaBI	TACGTA	1 cut(s)	1552
SsiI	CCGC	2 cut(s)	53, 406
SspMI	CTAG	2 cut(s)	102, 977
StyD4I	CCNGG	4 cut(s)	161, 295, 951, 952
StyI	CCWWGG	2 cut(s)	60, 455
TaaI	ACNGT	4 cut(s)	92, 287, 842, 1121
TaiI	ACGT	2 cut(s)	225, 1554
TaqI	TCGA	4 cut(s)	207, 484, 643, 1562
TatI	WGTACW	3 cut(s)	1217, 1304, 1493
TfiI	GAWTC	5 cut(s)	653, 662, 1017, 1292, 1559
Tru1I	TTAA	2 cut(s)	396, 981
Tru9I	TTAA	2 cut(s)	396, 981
TscAI	CASTG	1 cut(s)	1473
TseFI	GTSAC	2 cut(s)	1195, 1282
TseI	GCWGC	4 cut(s)	197, 265, 497, 961
Tsp45I	GTSAC	2 cut(s)	1195, 1282
TspDTI	ATGAA	7 cut(s)	150, 890, 995, 1007, 1425, 1581, 1611
TspMI	CCCGGG	1 cut(s)	952
TspRI	CASTG	1 cut(s)	1473
VpaK11BI	GGWCC	2 cut(s)	460, 1165
XapI	RAATTY	3 cut(s)	723, 1036, 1358
XceI	RCATGY	2 cut(s)	1003, 1320
XcmI	CCANNNNNNNNNTGG	1 cut(s)	385
XmaI	CCCGGG	1 cut(s)	952
XmiI	GTMKAC	2 cut(s)	1456, 1543
XmnI	GAANNNNTTC	2 cut(s)	242, 330
XspI	CTAG	2 cut(s)	102, 977
ZrmI	AGTACT	1 cut(s)	1495
Zsp2I	ATGCAT	2 cut(s)	636, 943

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.